PDB Chemical Component T6J

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for T6J

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C	S	1.659	1.814
O	S	1.413	1.421
S	O1	1.424	1.421
C1	S	1.722	1.814
C2	C1	1.502	1.506
C2	N	1.363	1.302
N	C3	1.409	1.358
C3	C4	1.413	1.397
C4	C5	1.378	1.366
C5	C6	1.419	1.388
C6	C7	1.375	1.378
C7	C8	1.404	1.388
C3	C8	1.422	1.406
C8	N1	1.403	1.381
N1	C2	1.409	1.360
N1	H9	1.000	0.970
C4	H5	1.080	1.080
C5	H6	1.080	1.080
C6	H7	1.080	1.081
C7	H8	1.080	1.081
C	H1	1.100	1.089
C	H	1.100	1.090
C	H2	1.100	1.090
C1	H4	1.100	1.090
C1	H3	1.100	1.090

Bond Angles for T6J

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C	S	O	111.3	108.6
C	S	O1	108.4	108.6
C	S	C1	97.7	102.0
S	C	H1	109.5	109.5
S	C	H	109.4	109.4
S	C	H2	109.5	109.5
O	S	O1	119.7	119.2
O	S	C1	110.2	108.6
C1	S	O1	107.3	108.6
C2	C1	S	116.8	109.5
S	C1	H4	107.6	109.4
S	C1	H3	107.6	109.5
N1	C2	C1	122.7	125.0
C2	C1	H4	107.6	109.5
C2	C1	H3	107.6	109.5
C2	N	C3	105.0	109.6
N1	C2	N	112.4	110.1
C3	C4	H5	121.3	120.1
C4	C5	C6	121.8	120.6
C5	C4	H5	121.3	120.0
C4	C5	H6	119.1	119.7
C5	C6	C7	121.9	120.5
C6	C5	H6	119.1	119.7
C5	C6	H7	119.0	119.7
C6	C7	C8	117.1	119.7
C7	C6	H7	119.1	119.8
C6	C7	H8	121.5	120.2
C8	C7	H8	121.5	120.1
C8	N1	C2	106.0	107.4
C8	N1	H9	127.0	126.3
C2	N1	H9	127.0	126.4
H1	C	H	109.5	109.5
H1	C	H2	109.5	109.5
H	C	H2	109.5	109.4
H4	C1	H3	109.5	109.4

Torsion Angles for T6J

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O	S	C	O1	133.6	131.0
O	S	C	C1	244.8	245.5
C1	S	C	O1	248.8	245.5
C2	C1	S	C	302.2	180.0
C	S	C1	H4	63.2	60.0
C	S	C1	H3	181.1	300.0
H1	C	S	H	240.0	240.0
H1	C	S	H2	120.0	120.0
H	C	S	H2	240.0	240.1
C	S	O	O1	232.3	235.0
C	S	O	C1	107.3	110.1
O	S	C	H1	180.0	65.5
O	S	C	H	300.0	185.6
O	S	C	H2	60.0	305.5
C1	S	O	O1	125.0	124.9
C2	C1	S	O	58.4	294.5
O	S	C1	H4	179.4	174.5
O	S	C1	H3	297.3	54.5
C	S	O1	O	129.1	125.0
C	S	O1	C1	255.4	249.9
O1	S	C	H1	46.4	294.5
O1	S	C	H	166.4	54.5
O1	S	C	H2	286.4	174.5
O	S	O1	C1	126.3	124.9
C2	C1	S	O1	190.2	65.5
O1	S	C1	H4	311.2	305.5
O1	S	C1	H3	69.1	185.5
C	S	C1	O	243.8	245.5
C	S	C1	O1	112.0	114.5
C1	S	C	H1	295.2	180.0
C1	S	C	H	55.2	300.1
C1	S	C	H2	175.2	60.0
O	S	C1	O1	228.2	229.0
N1	C2	C1	S	261.5	90.0
C2	C1	S	H4	239.0	120.0
C2	C1	S	H3	121.1	240.0
H4	C1	S	H3	242.1	119.9
C	S	C1	C2	302.2	180.0
O	S	C1	C2	58.4	294.5
S	C1	C2	H4	121.0	240.0
S	C1	C2	H3	238.9	120.0
C1	C2	N	C3	180.9	180.4
N1	C2	C1	N	180.2	180.1
C8	N1	C2	C1	179.0	179.7
C1	C2	N1	H9	359.0	360.0
H4	C1	C2	H3	117.9	240.0
N1	C2	N	C1	179.8	179.9
C8	N1	C2	N	359.2	359.8
N	C2	N1	H9	179.2	180.1
N1	C2	N	C3	0.8	0.3
N	C3	C4	H5	3.9	359.9
C5	C4	C3	H5	180.0	180.0
C3	C4	C5	H6	179.3	180.0
C3	C4	C5	H5	180.0	180.0
C4	C5	C6	C7	0.4	359.3
C6	C5	C4	H6	180.0	180.0
C4	C5	C6	H7	180.4	180.0
C6	C5	C4	H5	179.3	180.0
C4	C5	C6	H6	180.0	180.0
C5	C6	C7	C8	0.2	0.9
C7	C6	C5	H7	180.0	179.3
C5	C6	C7	H8	180.2	180.0
C7	C6	C5	H6	180.4	179.4
C5	C6	C7	H7	180.0	180.7
C8	C7	C6	H8	180.0	181.0
C8	C7	C6	H7	180.2	180.3
C6	C7	C8	H8	180.0	179.0
C7	C8	N1	C2	183.5	180.0
C7	C8	N1	H9	3.5	359.8
C8	C3	C4	H5	180.5	180.4
C3	C8	C7	H8	179.6	180.5
C3	C8	N1	H9	180.5	179.7
C2	N1	C8	H9	180.0	180.2
N1	C2	C1	H4	140.4	210.0
N1	C2	C1	H3	22.5	330.0
C8	N1	C2	H9	180.0	179.8
H9	N1	C2	C1	359.0	360.0
H9	N1	C2	N	179.2	180.1
C8	N1	H9	C2	180.0	180.3
H5	C4	C5	C6	179.3	180.0
H5	C4	C5	H6	359.3	0.0
C4	C5	H6	C6	180.0	180.0
H6	C5	C4	H5	359.3	0.0
H6	C5	C6	C7	180.4	179.4
H6	C5	C6	H7	0.4	0.0
C5	C6	H7	C7	180.0	179.3
H7	C6	C5	H6	0.4	0.0
H7	C6	C7	C8	180.2	180.3
H7	C6	C7	H8	0.2	359.3
C6	C7	H8	C8	180.0	181.0
H8	C7	C6	H7	0.2	359.3
H1	C	S	O	180.0	65.5
H1	C	S	O1	46.4	294.5
H1	C	S	C1	295.2	180.0
S	C	H1	H	120.0	120.0
S	C	H1	H2	240.0	240.0
H	C	H1	H2	120.0	120.0
H	C	S	O	300.0	185.6
H	C	S	O1	166.4	54.5
H	C	S	C1	55.2	300.1
S	C	H	H1	240.0	240.0
S	C	H	H2	120.0	119.9
H1	C	H	H2	240.0	240.0
H2	C	S	O	60.0	305.5
H2	C	S	O1	286.4	174.5
H2	C	S	C1	175.2	60.0
S	C	H2	H1	120.0	120.0
S	C	H2	H	240.0	240.1
H1	C	H2	H	120.0	120.0
H4	C1	S	O1	311.2	305.5
C2	C1	H4	S	126.6	240.0
S	C1	H4	H3	116.7	240.0
C2	C1	H4	H3	243.3	120.0
H3	C1	S	O1	69.1	185.5
C2	C1	H3	S	233.4	120.0
S	C1	H3	H4	243.3	120.0
C2	C1	H3	H4	116.7	240.0