PDB Chemical Component T6A

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for T6A

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.480 1.480
P OP2 1.480 1.609
P OP3 1.615 1.610
P O5' 1.611 1.610
OP2 HOP2 0.949 0.967
OP3 HOP3 0.949 0.966
O5' C5' 1.411 1.429
C5' C4' 1.523 1.529
C5' H5' 1.089 1.089
C5' H5'' 1.089 1.090
C4' O4' 1.426 1.445
C4' C3' 1.522 1.544
C4' H4' 1.099 1.090
O4' C1' 1.426 1.445
C3' O3' 1.433 1.429
C3' C2' 1.527 1.547
C3' H3' 1.099 1.090
O3' HO3' 0.950 0.967
C2' O2' 1.409 1.429
C2' C1' 1.524 1.544
C2' H2' 1.097 1.090
O2' HO2' 0.972 0.967
C1' N9 1.449 1.464
C1' H1' 1.099 1.090
N9 C8 1.365 1.362
N9 C4 1.366 1.371
C8 N7 1.307 1.300
C8 H8 1.079 1.080
N7 C5 1.400 1.353
C5 C6 1.400 1.404
C5 C4 1.366 1.407
C6 N6 1.458 1.387
C6 N1 1.342 1.328
N6 C10 1.389 1.348
N6 HN6 1.010 0.969
N1 C2 1.345 1.320
C2 N3 1.343 1.317
C2 H2 1.080 1.080
N3 C4 1.351 1.329
C10 O10 1.230 1.215
C10 N11 1.383 1.347
N11 C12 1.450 1.465
N11 HN1 1.010 0.970
C12 C13 1.523 1.506
C12 C14 1.529 1.529
C12 H12 1.090 1.090
C13 ODA 1.249 1.208
C13 ODB 1.250 1.342
ODB H13 0.950 0.967
C14 O14 1.409 1.428
C14 C15 1.528 1.531
C14 H14 1.090 1.090
O14 HO4 0.960 0.967
C15 H151 1.090 1.090
C15 H152 1.090 1.090
C15 H153 1.091 1.090

Bond Angles for T6A

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 119.6 109.5
OP1 P OP3 107.9 109.5
OP1 P O5' 108.0 109.5
OP2 P OP3 108.1 109.5
OP2 P O5' 108.0 109.5
P OP2 HOP2 119.6 106.8
OP3 P O5' 104.2 109.4
P OP3 HOP3 107.9 106.9
P O5' C5' 121.1 106.8
O5' C5' C4' 108.7 109.5
O5' C5' H5' 110.3 109.5
O5' C5' H5'' 110.0 109.4
C4' C5' H5' 109.3 109.5
C4' C5' H5'' 109.0 109.4
C5' C4' O4' 109.9 110.4
C5' C4' C3' 113.4 110.5
C5' C4' H4' 110.4 110.3
H5' C5' H5'' 109.5 109.5
O4' C4' C3' 105.7 104.8
O4' C4' H4' 108.1 110.4
C4' O4' C1' 110.2 105.3
C3' C4' H4' 109.1 110.4
C4' C3' O3' 110.7 110.5
C4' C3' C2' 102.2 104.1
C4' C3' H3' 108.2 110.5
O4' C1' C2' 106.8 104.9
O4' C1' N9 111.3 110.4
O4' C1' H1' 108.6 110.3
O3' C3' C2' 113.0 110.5
O3' C3' H3' 111.6 110.4
C3' O3' HO3' 110.7 106.8
C2' C3' H3' 110.7 110.6
C3' C2' O2' 110.4 110.5
C3' C2' C1' 105.0 104.0
C3' C2' H2' 111.0 110.5
O2' C2' C1' 109.3 110.8
O2' C2' H2' 111.6 110.4
C2' O2' HO2' 109.3 106.8
C1' C2' H2' 109.3 110.4
C2' C1' N9 110.0 110.4
C2' C1' H1' 109.7 110.4
N9 C1' H1' 110.4 110.4
C1' N9 C8 125.7 126.3
C1' N9 C4 125.1 126.3
C8 N9 C4 108.9 107.4
N9 C8 N7 111.3 110.0
N9 C8 H8 124.5 125.0
N9 C4 C5 104.1 106.0
N9 C4 N3 128.1 135.0
N7 C8 H8 124.2 125.0
C8 N7 C5 104.5 109.5
N7 C5 C6 133.1 134.8
N7 C5 C4 111.3 107.0
C6 C5 C4 115.6 118.2
C5 C6 N6 119.8 120.8
C5 C6 N1 117.0 118.4
C5 C4 N3 127.8 119.0
N6 C6 N1 123.2 120.8
C6 N6 C10 124.8 120.0
C6 N6 HN6 117.6 120.0
C6 N1 C2 123.8 121.3
C10 N6 HN6 117.6 120.0
N6 C10 O10 118.7 120.0
N6 C10 N11 122.2 120.0
N1 C2 N3 122.1 122.4
N1 C2 H2 119.0 118.8
N3 C2 H2 118.9 118.8
C2 N3 C4 113.6 120.6
O10 C10 N11 119.0 120.0
C10 N11 C12 118.2 120.0
C10 N11 HN1 117.5 120.0
C12 N11 HN1 124.2 119.9
N11 C12 C13 109.7 109.5
N11 C12 C14 109.1 109.5
N11 C12 H12 107.8 109.4
C13 C12 C14 110.7 109.4
C13 C12 H12 109.7 109.5
C12 C13 ODA 117.0 120.0
C12 C13 ODB 116.9 120.0
C14 C12 H12 109.8 109.5
C12 C14 O14 108.5 109.5
C12 C14 C15 112.0 109.5
C12 C14 H14 109.2 109.5
ODA C13 ODB 126.1 120.0
C13 ODB H13 117.0 120.0
O14 C14 C15 109.0 109.4
O14 C14 H14 107.8 109.4
C14 O14 HO4 108.5 106.8
C15 C14 H14 110.2 109.4
C14 C15 H151 109.6 109.5
C14 C15 H152 109.0 109.5
C14 C15 H153 110.5 109.4
H151 C15 H152 109.1 109.5
H151 C15 H153 109.7 109.5
H152 C15 H153 108.9 109.5

Torsion Angles for T6A

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 OP3 236.0 120.0
OP2 P OP1 O5' 123.9 240.0
OP1 P OP2 HOP2 180.0 300.0
OP3 P OP1 O5' 247.9 120.0
OP1 P OP3 HOP3 180.0 180.0
OP1 P O5' C5' 162.8 60.0
OP1 P OP2 OP3 123.9 240.0
OP1 P OP2 O5' 236.1 120.0
OP3 P OP2 O5' 112.2 240.0
OP2 P OP3 HOP3 310.7 60.0
OP2 P O5' C5' 32.2 180.0
OP1 P OP3 OP2 229.3 120.0
OP1 P OP3 O5' 114.6 240.0
OP2 P OP3 O5' 245.3 120.0
OP3 P OP2 HOP2 56.1 60.0
OP3 P O5' C5' 277.4 300.0
OP1 P O5' OP2 130.7 240.0
OP1 P O5' OP3 245.5 120.0
OP2 P O5' OP3 114.8 240.0
O5' P OP2 HOP2 303.9 180.0
O5' P OP3 HOP3 65.4 300.0
P O5' C5' C4' 174.7 180.0
P O5' C5' H5' 294.5 60.0
P O5' C5' H5'' 55.4 300.0
HOP2 OP2 P OP3 56.1 60.0
HOP2 OP2 P O5' 303.9 180.0
HOP3 OP3 P O5' 65.4 300.0
C4' C5' O5' H5' 240.2 120.1
C4' C5' O5' H5'' 119.3 240.1
O5' C5' C4' O4' 314.6 61.4
O5' C5' C4' C3' 72.6 176.8
O5' C5' C4' H4' 195.4 299.2
H5' C5' O5' H5'' 239.1 120.0
O5' C5' C4' H5' 120.4 240.0
O5' C5' C4' H5'' 240.1 119.9
H5' C5' C4' H5'' 119.6 240.0
O4' C4' C5' C3' 242.0 244.6
O4' C4' C5' H4' 119.2 122.3
C5' C4' O4' C1' 149.3 159.4
C3' C4' C5' H4' 237.2 237.7
C5' C4' C3' O3' 86.9 98.3
C5' C4' C3' C2' 207.5 217.0
C5' C4' C3' H3' 324.3 335.8
O5' C5' H5' C4' 240.5 120.1
O5' C5' H5' H5'' 121.2 240.0
C4' C5' H5' H5'' 240.7 120.0
H5' C5' C4' O4' 194.1 181.4
H5' C5' C4' C3' 312.2 296.9
H5' C5' C4' H4' 75.0 59.2
O5' C5' H5'' C4' 119.1 240.0
O5' C5' H5'' H5' 238.6 120.0
C4' C5' H5'' H5' 119.5 239.9
H5'' C5' C4' O4' 74.5 301.5
H5'' C5' C4' C3' 192.5 56.9
H5'' C5' C4' H4' 315.3 179.2
O4' C4' C5' H5' 194.1 181.4
O4' C4' C5' H5'' 74.5 301.5
C5' C4' O4' C3' 122.7 119.0
C5' C4' O4' H4' 239.4 237.8
C3' C4' O4' H4' 116.7 118.8
O4' C4' C3' O3' 207.3 217.3
O4' C4' C3' C2' 327.9 335.9
O4' C4' C3' H3' 84.7 94.7
C4' O4' C1' C2' 350.6 319.6
C4' O4' C1' N9 230.5 200.6
C4' O4' C1' H1' 108.8 78.4
C3' C4' C5' H5' 312.2 296.9
C3' C4' C5' H5'' 192.5 56.9
C5' C4' C3' O4' 239.6 241.1
C5' C4' C3' H4' 123.6 122.3
O4' C4' C3' H4' 244.0 241.2
C3' C4' O4' C1' 26.6 40.5
O3' C3' C4' C2' 239.4 241.3
O3' C3' C4' H3' 122.6 122.5
C4' C3' O3' HO3' 180.0 180.1
C2' C3' C4' H3' 243.2 241.2
C4' C3' C2' O2' 268.3 241.2
C4' C3' C2' C1' 26.0 0.2
C4' C3' C2' H2' 144.0 118.7
H4' C4' C5' H5' 75.0 59.2
H4' C4' C5' H5'' 315.3 179.2
C5' C4' H4' O4' 120.2 122.3
C5' C4' H4' C3' 234.7 237.6
O4' C4' H4' C3' 114.5 115.3
H4' C4' O4' C1' 269.9 281.7
H4' C4' C3' O3' 323.3 336.1
H4' C4' C3' C2' 83.9 94.7
H4' C4' C3' H3' 200.7 213.5
C1' O4' C4' C3' 26.6 40.5
C1' O4' C4' H4' 269.9 281.7
C3' C2' C1' O4' 348.6 23.8
O2' C2' C1' O4' 107.1 142.6
O4' C1' C2' H2' 229.5 265.2
C2' C1' O4' N9 120.1 118.9
C2' C1' O4' H1' 241.8 241.2
N9 C1' O4' H1' 121.7 122.2
O4' C1' N9 C8 38.0 27.1
O4' C1' N9 C4 210.7 207.1
O3' C3' C4' H4' 323.3 336.1
C4' C3' O3' C2' 113.9 114.7
C4' C3' O3' H3' 239.4 237.5
C2' C3' O3' H3' 125.5 122.8
O3' C3' C2' O2' 27.3 359.9
O3' C3' C2' C1' 145.0 118.8
O3' C3' C2' H2' 262.9 237.3
C2' C3' C4' H4' 83.9 94.7
C4' C3' C2' O3' 241.0 241.4
C4' C3' C2' H3' 115.0 118.7
O4' C1' C2' C3' 348.6 23.8
O3' C3' C2' H3' 234.0 237.4
C2' C3' O3' HO3' 66.1 65.4
O2' C2' C3' C1' 242.3 241.1
O2' C2' C3' H2' 124.3 122.6
C3' C2' O2' HO2' 56.9 298.5
C1' C2' C3' H2' 242.1 241.5
C3' C2' C1' N9 109.5 142.7
C3' C2' C1' H1' 231.1 265.0
H3' C3' C4' H4' 200.7 213.5
C4' C3' H3' O3' 122.0 122.5
C4' C3' H3' C2' 248.8 245.2
O3' C3' H3' C2' 126.8 122.7
H3' C3' O3' HO3' 300.6 302.6
H3' C3' C2' O2' 153.3 122.5
H3' C3' C2' C1' 271.0 241.4
H3' C3' C2' H2' 29.0 360.0
HO3' O3' C3' C2' 66.1 65.4
HO3' O3' C3' H3' 300.6 302.6
O4' C1' C2' O2' 107.1 142.6
O2' C2' C3' H3' 153.3 122.5
C3' C2' O2' C1' 115.0 114.7
C3' C2' O2' H2' 236.0 237.4
C1' C2' O2' H2' 121.0 122.7
O2' C2' C1' N9 228.0 261.5
O2' C2' C1' H1' 349.6 23.7
O4' C1' C2' N9 239.1 241.1
O4' C1' C2' H1' 117.5 118.8
C1' C2' C3' H3' 271.0 241.4
C3' C2' C1' O2' 241.5 241.3
C3' C2' C1' H2' 119.1 118.6
O2' C2' C1' H2' 237.6 237.3
C1' C2' O2' HO2' 301.9 183.8
N9 C1' C2' H1' 238.3 237.7
C2' C1' N9 C8 279.8 271.5
C2' C1' N9 C4 92.5 91.5
H2' C2' C3' H3' 29.0 360.0
C3' C2' H2' O2' 123.7 122.6
C3' C2' H2' C1' 244.7 245.5
O2' C2' H2' C1' 121.0 122.9
H2' C2' O2' HO2' 180.9 61.1
H2' C2' C1' N9 350.3 24.2
H2' C2' C1' H1' 112.0 146.4
HO2' O2' C2' C1' 301.9 183.8
HO2' O2' C2' H2' 180.9 61.1
O4' C1' N9 C2' 118.1 115.5
O4' C1' N9 H1' 239.4 237.8
N9 C1' C2' H2' 350.3 24.2
C2' C1' N9 H1' 121.2 122.3
C8 N9 C1' C4 187.3 180.0
C1' N9 C8 N7 174.7 180.0
C1' N9 C8 H8 354.9 360.0
C1' N9 C4 C5 185.4 180.3
C1' N9 C4 N3 5.2 360.0
O4' C1' H1' C2' 243.7 244.5
O4' C1' H1' N9 122.2 122.2
H1' C1' C2' H2' 112.0 146.4
C2' C1' H1' N9 238.6 237.7
H1' C1' N9 C8 158.6 149.3
H1' C1' N9 C4 331.3 329.2
C8 N9 C1' H1' 158.6 149.3
C1' N9 C8 C4 173.7 180.0
C8 N9 C4 C5 359.1 0.2
C8 N9 C4 N3 178.9 180.0
N7 C8 N9 H8 179.8 180.0
N9 C8 N7 C5 359.3 359.7
C4 N9 C1' H1' 331.3 329.2
C1' N9 C4 C8 186.3 180.0
C4 N9 C8 N7 1.0 0.0
C4 N9 C8 H8 181.2 180.0
N7 C5 C4 N9 0.5 359.6
C6 C5 C4 N9 179.2 180.3
C5 C4 N9 N3 180.2 180.3
C2 N3 C4 N9 180.3 180.0
N7 C8 N9 C4 1.0 0.0
N9 C8 N7 H8 180.2 180.0
C8 N7 C5 C6 181.6 179.5
C8 N7 C5 C4 0.1 0.4
H8 C8 N9 C4 181.2 180.0
N9 C8 H8 N7 179.8 180.0
H8 C8 N7 C5 179.1 179.8
N9 C4 C5 N7 0.5 359.6
C5 N7 C8 H8 179.1 179.8
C6 C5 N7 C4 181.5 179.1
N7 C5 C6 N6 359.5 0.8
N7 C5 C6 N1 179.0 180.4
N7 C5 C4 N3 180.7 179.8
N9 C4 C5 C6 179.2 180.3
N7 C5 C6 C4 178.4 181.0
C6 C5 C4 N3 359.5 0.5
N6 C6 C5 N1 180.5 180.3
C5 C6 N6 C10 178.7 179.7
C5 C6 N6 HN6 359.5 359.6
C5 C6 N1 C2 359.8 0.3
N9 C4 C5 N3 179.8 179.8
N7 C5 C4 C6 181.2 179.3
C4 C5 C6 N6 181.1 179.8
C4 C5 C6 N1 0.6 359.5
C2 N3 C4 C5 0.1 359.7
N6 C6 C5 C4 181.1 179.8
C5 C6 N6 N1 179.4 179.7
N6 C6 N1 C2 179.2 180.0
C10 N6 C6 HN6 179.2 180.1
C6 N6 C10 O10 180.6 359.9
C6 N6 C10 N11 0.4 180.0
N1 C6 C5 C4 0.6 359.5
C5 C6 N1 N6 180.5 180.3
N1 C6 N6 C10 359.2 0.1
N1 C6 N6 HN6 180.1 179.9
C6 N1 C2 N3 359.7 360.0
C6 N1 C2 H2 180.0 180.0
C10 N6 C6 N1 359.2 0.1
C6 N6 C10 HN6 180.8 179.9
O10 C10 N6 N11 180.2 179.9
N6 C10 N11 C12 180.6 180.0
N6 C10 N11 HN1 0.5 359.9
HN6 N6 C6 N1 180.1 179.9
C6 N6 HN6 C10 179.2 180.1
HN6 N6 C10 O10 359.8 180.1
HN6 N6 C10 N11 179.5 0.1
N3 C2 N1 H2 179.7 180.0
N1 C2 N3 C4 0.4 360.0
N9 C4 N3 C2 180.3 180.0
C5 C4 N3 C2 0.1 359.7
N1 C2 N3 H2 180.3 180.0
N1 C2 H2 N3 179.8 180.0
H2 C2 N3 C4 180.1 180.0
N9 C4 N3 C5 180.3 180.3
C4 N3 C2 H2 180.1 180.0
O10 C10 N6 HN6 359.8 180.1
N6 C10 O10 N11 179.8 180.1
O10 C10 N11 C12 0.4 0.0
O10 C10 N11 HN1 180.2 180.0
N11 C10 N6 HN6 179.5 0.1
N6 C10 N11 O10 180.2 179.9
C12 N11 C10 HN1 180.1 180.1
C10 N11 C12 C13 296.3 270.0
C10 N11 C12 C14 174.9 150.0
C10 N11 C12 H12 55.7 30.0
C10 N11 C12 HN1 179.9 179.9
C13 C12 N11 C14 121.4 120.0
C13 C12 N11 H12 240.6 240.0
N11 C12 C13 ODA 161.5 149.9
N11 C12 C13 ODB 341.4 330.0
C14 C12 N11 H12 119.2 120.0
N11 C12 C14 O14 41.9 60.0
N11 C12 C14 C15 281.6 300.0
N11 C12 C14 H14 159.3 180.0
C10 N11 HN1 C12 180.1 180.1
HN1 N11 C12 C13 116.4 90.1
HN1 N11 C12 C14 355.0 330.1
HN1 N11 C12 H12 235.8 210.0
C13 C12 N11 HN1 116.4 90.1
N11 C12 C13 C14 239.6 240.0
N11 C12 C13 H12 118.2 120.0
C14 C12 C13 H12 238.6 240.0
C13 C12 C14 O14 281.2 300.0
C13 C12 C14 C15 160.8 180.0
C13 C12 C14 H14 38.5 60.0
ODA C13 C12 ODB 180.1 180.0
C12 C13 ODB H13 179.9 180.0
C14 C12 N11 HN1 355.0 330.1
N11 C12 C14 C13 120.8 120.0
N11 C12 C14 H12 242.1 240.0
C13 C12 C14 H12 121.3 120.0
C14 C12 C13 ODA 281.9 270.0
C14 C12 C13 ODB 101.9 90.0
O14 C14 C12 C15 120.4 120.0
O14 C14 C12 H14 242.7 240.0
C12 C14 O14 HO4 178.6 300.0
C15 C14 C12 H14 122.3 120.0
C12 C14 C15 H151 55.8 180.0
C12 C14 C15 H152 175.2 300.1
C12 C14 C15 H153 294.9 60.1
H12 C12 N11 HN1 235.8 210.0
N11 C12 H12 C13 240.6 240.0
N11 C12 H12 C14 118.8 120.0
C13 C12 H12 C14 238.1 240.0
H12 C12 C13 ODA 43.3 30.0
H12 C12 C13 ODB 223.2 210.0
H12 C12 C14 O14 159.9 180.0
H12 C12 C14 C15 39.5 60.0
H12 C12 C14 H14 277.2 300.0
ODA C13 C12 C14 281.9 270.0
ODA C13 C12 H12 43.3 30.0
C12 C13 ODA ODB 179.9 180.0
ODA C13 ODB H13 359.9 0.0
ODB C13 C12 C14 101.9 90.0
ODB C13 C12 H12 223.2 210.0
C12 C13 ODB ODA 180.1 180.0
O14 C14 C12 H12 159.9 180.0
C12 C14 O14 C15 237.8 240.0
C12 C14 O14 H14 118.2 120.1
C15 C14 O14 H14 240.4 240.1
O14 C14 C15 H151 295.7 60.0
O14 C14 C15 H152 55.1 180.0
O14 C14 C15 H153 174.8 300.0
C15 C14 C12 H12 39.5 60.0
C12 C14 C15 O14 120.1 120.1
C12 C14 C15 H14 238.2 240.0
O14 C14 C15 H14 118.1 119.9
C15 C14 O14 HO4 300.8 60.0
H151 C15 C14 H152 240.6 240.0
H151 C15 C14 H153 121.0 120.0
H152 C15 C14 H153 240.4 240.0
H14 C14 C12 H12 277.2 300.0
C12 C14 H14 O14 242.2 239.9
C12 C14 H14 C15 123.4 120.0
O14 C14 H14 C15 241.2 240.1
H14 C14 O14 HO4 60.4 179.9
H14 C14 C15 H151 177.6 300.0
H14 C14 C15 H152 297.0 60.1
H14 C14 C15 H153 56.6 180.1
HO4 O14 C14 C15 300.8 60.0
HO4 O14 C14 H14 60.4 179.9
H151 C15 C14 H14 177.6 300.0
C14 C15 H151 H152 119.3 120.0
C14 C15 H151 H153 238.5 240.0
H152 C15 H151 H153 119.2 120.0
H152 C15 C14 H14 297.0 60.1
C14 C15 H152 H151 240.3 240.0
C14 C15 H152 H153 120.6 120.0
H151 C15 H152 H153 240.3 240.0
H153 C15 C14 H14 56.6 180.1
C14 C15 H153 H151 120.9 120.0
C14 C15 H153 H152 240.3 240.0
H151 C15 H153 H152 119.3 120.0