PDB Chemical Component T67
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for T67
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
N1 |
1.462 |
1.470 |
N1 |
C2 |
1.465 |
1.469 |
C2 |
C3 |
1.510 |
1.533 |
C3 |
N2 |
1.461 |
1.471 |
N2 |
C4 |
1.461 |
1.470 |
C4 |
C5 |
1.510 |
1.533 |
N2 |
C6 |
1.345 |
1.348 |
C6 |
O1 |
1.229 |
1.213 |
C6 |
C7 |
1.521 |
1.507 |
C7 |
C8 |
1.492 |
1.507 |
C8 |
C9 |
1.363 |
1.342 |
C9 |
N3 |
1.370 |
1.370 |
N3 |
C10 |
1.363 |
1.374 |
C10 |
N4 |
1.341 |
1.327 |
N4 |
C11 |
1.339 |
1.316 |
C11 |
C12 |
1.392 |
1.386 |
C12 |
C13 |
1.379 |
1.382 |
C13 |
C14 |
1.399 |
1.397 |
N1 |
C5 |
1.466 |
1.469 |
C8 |
C14 |
1.432 |
1.464 |
C10 |
C14 |
1.408 |
1.408 |
N3 |
H15 |
1.000 |
0.970 |
C4 |
H9 |
1.100 |
1.090 |
C4 |
H8 |
1.100 |
1.090 |
C5 |
H11 |
1.100 |
1.090 |
C5 |
H10 |
1.100 |
1.090 |
C7 |
H13 |
1.101 |
1.090 |
C7 |
H12 |
1.100 |
1.089 |
C13 |
H18 |
1.080 |
1.080 |
C1 |
H1 |
1.100 |
1.090 |
C1 |
H2 |
1.100 |
1.090 |
C1 |
H3 |
1.100 |
1.090 |
C11 |
H16 |
1.080 |
1.080 |
C12 |
H17 |
1.080 |
1.080 |
C2 |
H5 |
1.100 |
1.090 |
C2 |
H4 |
1.100 |
1.090 |
C3 |
H7 |
1.100 |
1.090 |
C3 |
H6 |
1.100 |
1.090 |
C9 |
H14 |
1.080 |
1.080 |
Bond Angles for T67
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C1 |
N1 |
C2 |
110.9 |
111.0 |
N1 |
C2 |
C3 |
110.6 |
109.3 |
C5 |
N1 |
C2 |
110.2 |
111.3 |
N1 |
C2 |
H5 |
109.2 |
109.5 |
N1 |
C2 |
H4 |
109.2 |
109.5 |
C2 |
C3 |
N2 |
109.2 |
108.5 |
C3 |
C2 |
H5 |
109.2 |
109.5 |
C3 |
C2 |
H4 |
109.2 |
109.5 |
C2 |
C3 |
H7 |
109.5 |
109.6 |
C2 |
C3 |
H6 |
109.5 |
109.6 |
N2 |
C3 |
H7 |
109.6 |
109.6 |
N2 |
C3 |
H6 |
109.6 |
109.6 |
N2 |
C4 |
H9 |
109.5 |
109.6 |
N2 |
C4 |
H8 |
109.5 |
109.8 |
N1 |
C5 |
C4 |
111.1 |
109.3 |
C5 |
C4 |
H9 |
109.5 |
109.6 |
C5 |
C4 |
H8 |
109.5 |
109.6 |
C4 |
C5 |
H11 |
109.1 |
109.5 |
C4 |
C5 |
H10 |
109.1 |
109.5 |
N2 |
C6 |
O1 |
121.9 |
120.0 |
C7 |
C6 |
O1 |
120.3 |
120.0 |
C6 |
C7 |
C8 |
109.2 |
109.5 |
C6 |
C7 |
H13 |
109.5 |
109.5 |
C6 |
C7 |
H12 |
109.5 |
109.5 |
C7 |
C8 |
C9 |
126.9 |
126.6 |
C7 |
C8 |
C14 |
126.3 |
126.6 |
C8 |
C7 |
H13 |
109.5 |
109.4 |
C8 |
C7 |
H12 |
109.5 |
109.4 |
C14 |
C8 |
C9 |
106.7 |
106.9 |
C8 |
C9 |
H14 |
125.0 |
125.1 |
C9 |
N3 |
H15 |
125.5 |
125.0 |
N3 |
C10 |
N4 |
126.8 |
133.2 |
N3 |
C10 |
C14 |
108.1 |
107.0 |
C10 |
N3 |
H15 |
125.6 |
125.0 |
C10 |
N4 |
C11 |
115.0 |
121.7 |
C14 |
C10 |
N4 |
125.1 |
119.8 |
N4 |
C11 |
H16 |
117.6 |
119.2 |
C12 |
C11 |
H16 |
117.6 |
119.2 |
C11 |
C12 |
H17 |
120.4 |
120.2 |
C12 |
C13 |
C14 |
118.0 |
118.0 |
C12 |
C13 |
H18 |
121.0 |
121.0 |
C8 |
C14 |
C13 |
135.8 |
134.3 |
C10 |
C14 |
C13 |
117.7 |
119.5 |
C14 |
C13 |
H18 |
121.0 |
121.0 |
N1 |
C5 |
H11 |
109.1 |
109.5 |
N1 |
C5 |
H10 |
109.1 |
109.5 |
C8 |
C14 |
C10 |
106.4 |
106.2 |
H9 |
C4 |
H8 |
109.5 |
109.7 |
H11 |
C5 |
H10 |
109.4 |
109.5 |
H13 |
C7 |
H12 |
109.5 |
109.5 |
H1 |
C1 |
H2 |
109.5 |
109.5 |
H1 |
C1 |
H3 |
109.4 |
109.5 |
H2 |
C1 |
H3 |
109.5 |
109.5 |
H5 |
C2 |
H4 |
109.5 |
109.5 |
H7 |
C3 |
H6 |
109.5 |
109.8 |
Torsion Angles for T67
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C1 |
N1 |
C2 |
C3 |
179.3 |
172.7 |
C5 |
N1 |
C1 |
C2 |
237.3 |
235.7 |
C1 |
N1 |
C2 |
H5 |
299.4 |
292.7 |
C1 |
N1 |
C2 |
H4 |
59.1 |
52.8 |
C1 |
N1 |
C5 |
H11 |
60.0 |
307.3 |
C1 |
N1 |
C5 |
H10 |
300.5 |
67.3 |
N1 |
C2 |
C3 |
N2 |
58.1 |
53.8 |
C3 |
C2 |
N1 |
H5 |
239.8 |
240.0 |
C3 |
C2 |
N1 |
H4 |
120.2 |
119.9 |
N1 |
C2 |
C3 |
H7 |
178.1 |
173.5 |
N1 |
C2 |
C3 |
H6 |
298.2 |
294.1 |
C2 |
N1 |
C5 |
C4 |
57.2 |
63.1 |
C2 |
N1 |
C5 |
H11 |
296.9 |
183.1 |
C2 |
N1 |
C5 |
H10 |
177.4 |
303.1 |
H5 |
C2 |
N1 |
H4 |
240.3 |
239.9 |
C5 |
N1 |
C2 |
C3 |
302.2 |
296.9 |
N1 |
C2 |
C3 |
H5 |
120.1 |
120.0 |
N1 |
C2 |
C3 |
H4 |
239.8 |
240.0 |
N2 |
C3 |
C2 |
H7 |
240.1 |
240.3 |
N2 |
C3 |
C2 |
H6 |
120.0 |
119.7 |
H5 |
C2 |
C3 |
H4 |
119.7 |
120.0 |
H7 |
C3 |
C2 |
H6 |
239.9 |
239.4 |
N2 |
C3 |
C2 |
H5 |
298.0 |
293.8 |
N2 |
C3 |
C2 |
H4 |
178.3 |
173.8 |
C2 |
C3 |
N2 |
H7 |
119.9 |
119.7 |
C2 |
C3 |
N2 |
H6 |
240.1 |
240.3 |
C3 |
N2 |
C4 |
H9 |
178.1 |
291.6 |
C3 |
N2 |
C4 |
H8 |
298.1 |
171.0 |
C3 |
N2 |
C6 |
O1 |
183.4 |
0.0 |
H7 |
C3 |
N2 |
H6 |
120.1 |
120.6 |
C5 |
C4 |
N2 |
H9 |
240.0 |
119.7 |
C5 |
C4 |
N2 |
H8 |
120.0 |
240.3 |
N2 |
C4 |
C5 |
H11 |
63.5 |
186.2 |
N2 |
C4 |
C5 |
H10 |
183.0 |
66.1 |
H9 |
C4 |
N2 |
H8 |
240.0 |
120.6 |
C4 |
C5 |
N1 |
C2 |
57.2 |
63.1 |
N2 |
C4 |
C5 |
H9 |
120.0 |
240.3 |
N2 |
C4 |
C5 |
H8 |
240.0 |
119.9 |
N1 |
C5 |
C4 |
H11 |
239.8 |
119.9 |
N1 |
C5 |
C4 |
H10 |
120.3 |
240.1 |
H9 |
C4 |
C5 |
H8 |
120.0 |
239.6 |
H11 |
C5 |
C4 |
H10 |
240.5 |
120.1 |
C6 |
N2 |
C4 |
H9 |
2.6 |
111.6 |
C6 |
N2 |
C4 |
H8 |
122.6 |
350.9 |
C7 |
C6 |
N2 |
O1 |
178.7 |
180.0 |
N2 |
C6 |
C7 |
H13 |
294.6 |
300.0 |
N2 |
C6 |
C7 |
H12 |
54.7 |
60.0 |
O1 |
C6 |
C7 |
C8 |
353.4 |
360.0 |
O1 |
C6 |
C7 |
H13 |
113.3 |
119.9 |
O1 |
C6 |
C7 |
H12 |
233.4 |
240.0 |
N2 |
C6 |
C7 |
O1 |
181.3 |
180.0 |
C6 |
C7 |
C8 |
C9 |
104.8 |
265.0 |
C6 |
C7 |
C8 |
C14 |
287.1 |
84.4 |
C8 |
C7 |
C6 |
H13 |
240.0 |
240.1 |
C8 |
C7 |
C6 |
H12 |
120.0 |
120.0 |
H13 |
C7 |
C6 |
H12 |
239.9 |
239.9 |
C8 |
C7 |
C6 |
O1 |
353.4 |
360.0 |
C6 |
C7 |
C8 |
H13 |
120.0 |
120.0 |
C6 |
C7 |
C8 |
H12 |
240.0 |
240.0 |
C14 |
C8 |
C7 |
C9 |
182.3 |
179.4 |
C7 |
C8 |
C9 |
H14 |
1.6 |
359.6 |
C7 |
C8 |
C14 |
C13 |
358.8 |
0.5 |
C7 |
C8 |
C14 |
C10 |
178.8 |
180.1 |
H13 |
C7 |
C8 |
H12 |
120.1 |
120.0 |
C7 |
C8 |
C9 |
C14 |
181.9 |
179.5 |
C9 |
C8 |
C7 |
H13 |
344.8 |
145.0 |
C9 |
C8 |
C7 |
H12 |
224.8 |
25.0 |
C8 |
C9 |
N3 |
H15 |
179.8 |
179.8 |
C9 |
C8 |
C14 |
C13 |
180.7 |
180.0 |
C9 |
C8 |
C14 |
C10 |
0.7 |
359.7 |
C9 |
N3 |
C10 |
N4 |
179.5 |
180.3 |
C10 |
N3 |
C9 |
H15 |
180.0 |
179.7 |
C9 |
N3 |
C10 |
H15 |
180.0 |
180.3 |
N3 |
C10 |
N4 |
C11 |
180.4 |
180.0 |
C14 |
C10 |
N3 |
N4 |
181.1 |
180.0 |
N3 |
C10 |
C14 |
C13 |
179.2 |
179.8 |
C8 |
C14 |
C10 |
N3 |
359.2 |
0.1 |
N3 |
C10 |
N4 |
C14 |
181.3 |
180.0 |
N4 |
C10 |
N3 |
H15 |
359.5 |
359.9 |
C10 |
N4 |
C11 |
H16 |
180.7 |
180.2 |
N4 |
C10 |
C14 |
C13 |
0.2 |
359.8 |
C8 |
C14 |
C10 |
N4 |
180.3 |
180.0 |
C14 |
C10 |
N4 |
C11 |
359.2 |
0.0 |
C12 |
C11 |
N4 |
H16 |
180.0 |
179.9 |
N4 |
C11 |
C12 |
H17 |
180.0 |
180.1 |
C10 |
N4 |
C11 |
C12 |
0.7 |
0.0 |
N4 |
C11 |
C12 |
H16 |
180.0 |
180.1 |
C11 |
C12 |
C13 |
C14 |
359.4 |
359.7 |
C11 |
C12 |
C13 |
H18 |
179.4 |
179.7 |
C8 |
C14 |
C13 |
C12 |
180.5 |
180.0 |
C10 |
C14 |
C13 |
C12 |
0.5 |
0.3 |
C14 |
C13 |
C12 |
H18 |
180.0 |
180.0 |
C13 |
C14 |
C8 |
C9 |
180.7 |
180.0 |
C13 |
C14 |
C10 |
N4 |
0.2 |
359.8 |
C12 |
C13 |
C14 |
H18 |
180.0 |
180.0 |
C8 |
C14 |
C13 |
C10 |
180.0 |
179.6 |
C1 |
N1 |
C5 |
C2 |
123.1 |
124.2 |
C5 |
N1 |
C2 |
H5 |
62.4 |
56.9 |
C5 |
N1 |
C2 |
H4 |
182.1 |
177.0 |
N1 |
C5 |
C4 |
H9 |
183.3 |
65.9 |
N1 |
C5 |
C4 |
H8 |
63.3 |
186.3 |
C4 |
C5 |
N1 |
H11 |
120.3 |
240.0 |
C4 |
C5 |
N1 |
H10 |
239.7 |
120.0 |
H11 |
C5 |
N1 |
H10 |
119.5 |
239.9 |
C7 |
C8 |
C14 |
C9 |
178.1 |
180.5 |
C14 |
C8 |
C7 |
H13 |
167.1 |
324.4 |
C14 |
C8 |
C7 |
H12 |
47.1 |
204.4 |
C14 |
C8 |
C9 |
H14 |
179.7 |
180.1 |
N3 |
C10 |
C14 |
C8 |
359.2 |
0.1 |
C12 |
C13 |
C14 |
C8 |
180.5 |
180.0 |
C10 |
C14 |
C8 |
C13 |
180.0 |
179.7 |
C8 |
C14 |
C13 |
H18 |
0.5 |
360.0 |
C10 |
C14 |
C8 |
C9 |
0.7 |
359.7 |
N3 |
C10 |
C14 |
N4 |
178.9 |
180.0 |
C14 |
C10 |
N3 |
H15 |
180.6 |
179.9 |
C12 |
C13 |
C14 |
C10 |
0.5 |
0.3 |
C8 |
C14 |
C10 |
C13 |
180.0 |
180.3 |
C10 |
C14 |
C13 |
H18 |
180.5 |
180.4 |
H15 |
N3 |
C10 |
N4 |
359.5 |
359.9 |
H15 |
N3 |
C10 |
C14 |
180.6 |
179.9 |
N2 |
C4 |
H9 |
H8 |
120.1 |
239.3 |
C5 |
C4 |
H9 |
H8 |
239.9 |
120.3 |
H9 |
C4 |
C5 |
H11 |
303.5 |
305.9 |
H9 |
C4 |
C5 |
H10 |
63.0 |
185.8 |
N2 |
C4 |
H8 |
H9 |
239.9 |
120.6 |
C5 |
C4 |
H8 |
H9 |
120.1 |
239.7 |
H8 |
C4 |
C5 |
H11 |
183.5 |
66.4 |
H8 |
C4 |
C5 |
H10 |
303.0 |
306.2 |
H11 |
C5 |
N1 |
C2 |
296.9 |
183.1 |
N1 |
C5 |
H11 |
C4 |
121.5 |
240.1 |
H11 |
C5 |
C4 |
H9 |
303.5 |
305.9 |
H11 |
C5 |
C4 |
H8 |
183.5 |
66.4 |
C4 |
C5 |
H11 |
H10 |
119.3 |
239.9 |
N1 |
C5 |
H11 |
H10 |
240.8 |
120.0 |
H10 |
C5 |
N1 |
C2 |
177.4 |
303.1 |
N1 |
C5 |
H10 |
C4 |
238.5 |
119.9 |
H10 |
C5 |
C4 |
H9 |
63.0 |
185.8 |
H10 |
C5 |
C4 |
H8 |
303.0 |
306.2 |
C4 |
C5 |
H10 |
H11 |
240.8 |
120.1 |
N1 |
C5 |
H10 |
H11 |
119.2 |
240.0 |
H13 |
C7 |
C6 |
O1 |
113.3 |
119.9 |
C6 |
C7 |
H13 |
C8 |
240.2 |
240.0 |
C6 |
C7 |
H13 |
H12 |
120.1 |
120.1 |
H13 |
C7 |
C8 |
C9 |
344.8 |
145.0 |
H13 |
C7 |
C8 |
C14 |
167.1 |
324.4 |
C8 |
C7 |
H13 |
H12 |
239.9 |
240.0 |
H12 |
C7 |
C6 |
O1 |
233.4 |
240.0 |
C6 |
C7 |
H12 |
C8 |
119.8 |
120.0 |
C6 |
C7 |
H12 |
H13 |
239.9 |
240.0 |
H12 |
C7 |
C8 |
C9 |
224.8 |
25.0 |
H12 |
C7 |
C8 |
C14 |
47.1 |
204.4 |
C8 |
C7 |
H12 |
H13 |
120.1 |
120.0 |
C12 |
C13 |
H18 |
C14 |
180.0 |
180.0 |
H1 |
C1 |
N1 |
C2 |
180.0 |
60.0 |
H2 |
C1 |
H1 |
H3 |
120.0 |
120.0 |
H2 |
C1 |
N1 |
C2 |
300.0 |
180.0 |
H1 |
C1 |
H2 |
H3 |
240.0 |
240.0 |
H3 |
C1 |
N1 |
C2 |
60.0 |
300.0 |
H1 |
C1 |
H3 |
H2 |
120.0 |
120.0 |
H16 |
C11 |
C12 |
H17 |
0.0 |
360.0 |
H17 |
C12 |
C11 |
H16 |
0.0 |
360.0 |
H17 |
C12 |
C13 |
C14 |
179.4 |
179.7 |
H17 |
C12 |
C13 |
H18 |
359.4 |
359.7 |
N1 |
C2 |
H5 |
C3 |
239.0 |
240.1 |
N1 |
C2 |
H5 |
H4 |
119.5 |
120.1 |
H5 |
C2 |
C3 |
N2 |
298.0 |
293.8 |
C3 |
C2 |
H5 |
H4 |
240.5 |
240.0 |
H5 |
C2 |
C3 |
H7 |
57.9 |
53.5 |
H5 |
C2 |
C3 |
H6 |
178.0 |
174.1 |
N1 |
C2 |
H4 |
C3 |
121.0 |
119.9 |
N1 |
C2 |
H4 |
H5 |
240.5 |
239.9 |
H4 |
C2 |
C3 |
N2 |
178.3 |
173.8 |
C3 |
C2 |
H4 |
H5 |
119.5 |
120.1 |
H4 |
C2 |
C3 |
H7 |
298.3 |
293.5 |
H4 |
C2 |
C3 |
H6 |
58.4 |
54.1 |
C2 |
C3 |
H7 |
N2 |
240.3 |
241.0 |
H7 |
C3 |
C2 |
H5 |
57.9 |
53.5 |
H7 |
C3 |
C2 |
H4 |
298.3 |
293.5 |
C2 |
C3 |
H7 |
H6 |
120.1 |
120.5 |
N2 |
C3 |
H7 |
H6 |
239.8 |
239.5 |
C2 |
C3 |
H6 |
N2 |
119.7 |
119.0 |
H6 |
C3 |
C2 |
H5 |
178.0 |
174.1 |
H6 |
C3 |
C2 |
H4 |
58.4 |
54.1 |
C2 |
C3 |
H6 |
H7 |
239.9 |
239.5 |
N2 |
C3 |
H6 |
H7 |
120.2 |
120.5 |
H14 |
C9 |
N3 |
H15 |
359.8 |
0.3 |