Atom Nomenclature for T67

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for T67

Atom Name (V3) Atom Name (V2)
N1 N1
N3 N2
C4 C1
C5 C2
C6 C3
C7 C4
C8 C5
C10 C6
C13 C7
C1 C8
C11 C9
C12 C10
C14 C11
C2 C12
C3 C13
C9 C14
N2 N3
N4 N4
O1 O1
H15 H2
H9 H3
H8 H4
H11 H5
H10 H6
H13 H7
H12 H8
H18 H9
H1 H10
H2 H11
H3 H12
H16 H13
H17 H14
H5 H15
H4 H16
H7 H17
H6 H18
H14 H19