PDB Chemical Component T5G
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for T5G
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
BR |
C |
1.979 |
1.891 |
C |
C1 |
1.398 |
1.384 |
C1 |
C2 |
1.408 |
1.382 |
C2 |
C3 |
1.413 |
1.382 |
C3 |
S |
1.686 |
1.761 |
N |
S |
1.640 |
1.655 |
O |
S |
1.411 |
1.422 |
S |
O1 |
1.425 |
1.421 |
C4 |
C3 |
1.403 |
1.382 |
C5 |
C4 |
1.394 |
1.382 |
C |
C5 |
1.391 |
1.384 |
C4 |
H4 |
1.080 |
1.080 |
C5 |
H5 |
1.080 |
1.080 |
N |
H3 |
1.000 |
0.970 |
N |
H2 |
1.000 |
0.970 |
C1 |
H |
1.080 |
1.080 |
C2 |
H1 |
1.080 |
1.081 |
Bond Angles for T5G
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C |
C1 |
C2 |
118.1 |
120.0 |
C |
C1 |
H |
120.9 |
120.0 |
C1 |
C2 |
C3 |
121.9 |
120.0 |
C2 |
C1 |
H |
121.0 |
120.1 |
C1 |
C2 |
H1 |
119.1 |
119.9 |
C2 |
C3 |
S |
121.9 |
120.0 |
C4 |
C3 |
C2 |
117.4 |
120.0 |
C3 |
C2 |
H1 |
119.1 |
120.0 |
N |
S |
C3 |
102.3 |
107.3 |
O |
S |
C3 |
109.4 |
106.4 |
C3 |
S |
O1 |
109.9 |
106.4 |
C4 |
C3 |
S |
120.7 |
120.0 |
N |
S |
O |
106.8 |
106.4 |
N |
S |
O1 |
107.7 |
106.4 |
S |
N |
H3 |
109.5 |
120.1 |
S |
N |
H2 |
109.4 |
120.0 |
O |
S |
O1 |
119.4 |
123.1 |
C5 |
C4 |
C3 |
121.9 |
120.0 |
C3 |
C4 |
H4 |
119.1 |
120.0 |
C5 |
C4 |
H4 |
119.1 |
120.0 |
C |
C5 |
H5 |
120.4 |
120.0 |
H3 |
N |
H2 |
109.5 |
120.0 |
Torsion Angles for T5G
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
BR |
C |
C1 |
H |
2.0 |
0.0 |
BR |
C |
C5 |
H5 |
357.8 |
360.0 |
C |
C1 |
C2 |
C3 |
0.1 |
0.0 |
C2 |
C1 |
C |
H |
180.0 |
180.0 |
C |
C1 |
C2 |
H1 |
180.1 |
180.0 |
C1 |
C |
C5 |
H5 |
179.1 |
180.0 |
C |
C1 |
C2 |
H |
180.0 |
180.0 |
C1 |
C2 |
C3 |
S |
178.9 |
180.2 |
C4 |
C3 |
C2 |
C1 |
359.4 |
0.0 |
C3 |
C2 |
C1 |
H1 |
180.0 |
180.0 |
C3 |
C2 |
C1 |
H |
180.1 |
180.0 |
C1 |
C2 |
C3 |
H1 |
180.0 |
180.0 |
N |
S |
C3 |
C2 |
294.2 |
269.8 |
O |
S |
C3 |
C2 |
47.2 |
23.3 |
C2 |
C3 |
S |
O1 |
180.0 |
156.2 |
C4 |
C3 |
C2 |
S |
180.6 |
179.8 |
C5 |
C4 |
C3 |
C2 |
0.4 |
360.0 |
C2 |
C3 |
C4 |
H4 |
180.3 |
180.3 |
C4 |
C3 |
S |
C2 |
179.4 |
180.2 |
S |
C3 |
C2 |
H1 |
358.9 |
0.2 |
N |
S |
C3 |
O |
247.0 |
246.4 |
N |
S |
C3 |
O1 |
114.2 |
113.6 |
C3 |
S |
N |
H3 |
180.0 |
180.0 |
C3 |
S |
N |
H2 |
300.0 |
360.0 |
O |
S |
C3 |
O1 |
227.2 |
227.1 |
C5 |
C4 |
C3 |
S |
180.9 |
179.8 |
S |
C3 |
C4 |
H4 |
0.9 |
0.0 |
C2 |
C3 |
S |
N |
294.2 |
269.8 |
O |
S |
N |
C3 |
245.1 |
246.4 |
C3 |
S |
N |
O1 |
244.3 |
246.4 |
C4 |
C3 |
S |
N |
113.6 |
90.0 |
O |
S |
N |
O1 |
129.4 |
132.9 |
H3 |
N |
S |
H2 |
240.0 |
180.1 |
C2 |
C3 |
S |
O |
47.2 |
23.3 |
N |
S |
O |
C3 |
110.0 |
114.1 |
C3 |
S |
O |
O1 |
127.7 |
122.9 |
C4 |
C3 |
S |
O |
226.6 |
203.6 |
N |
S |
O |
O1 |
237.6 |
237.1 |
O |
S |
N |
H3 |
65.2 |
66.5 |
O |
S |
N |
H2 |
185.2 |
246.4 |
N |
S |
O1 |
C3 |
249.4 |
245.8 |
O |
S |
O1 |
C3 |
127.4 |
122.9 |
C4 |
C3 |
S |
O1 |
359.4 |
336.4 |
N |
S |
O1 |
O |
121.9 |
122.9 |
O1 |
S |
N |
H3 |
295.8 |
293.6 |
O1 |
S |
N |
H2 |
55.8 |
113.5 |
C1 |
C2 |
C3 |
C4 |
359.4 |
0.0 |
C2 |
C3 |
C4 |
S |
179.5 |
180.2 |
C4 |
C3 |
C2 |
H1 |
179.4 |
180.0 |
N |
S |
C3 |
C4 |
113.6 |
90.0 |
O |
S |
C3 |
C4 |
226.6 |
203.6 |
C5 |
C4 |
C3 |
H4 |
180.0 |
179.7 |
C3 |
C4 |
C5 |
H4 |
180.0 |
180.3 |
C |
C5 |
C4 |
C3 |
0.4 |
360.0 |
C |
C5 |
C4 |
H4 |
180.4 |
179.7 |
H4 |
C4 |
C3 |
C2 |
180.3 |
180.3 |
H4 |
C4 |
C3 |
S |
0.9 |
0.0 |
C5 |
C4 |
H4 |
C3 |
180.0 |
180.3 |
H5 |
C5 |
C4 |
C3 |
180.4 |
180.0 |
H5 |
C5 |
C4 |
H4 |
0.4 |
359.7 |
H3 |
N |
S |
C3 |
180.0 |
180.0 |
H3 |
N |
S |
O |
65.2 |
66.5 |
H3 |
N |
S |
O1 |
295.8 |
293.6 |
S |
N |
H3 |
H2 |
120.0 |
179.9 |
H2 |
N |
S |
C3 |
300.0 |
360.0 |
H2 |
N |
S |
O |
185.2 |
246.4 |
H2 |
N |
S |
O1 |
55.8 |
113.5 |
S |
N |
H2 |
H3 |
240.0 |
180.1 |
C |
C1 |
H |
C2 |
180.0 |
180.0 |
H |
C1 |
C2 |
C3 |
180.1 |
180.0 |
H |
C1 |
C2 |
H1 |
0.1 |
0.0 |
C1 |
C2 |
H1 |
C3 |
180.0 |
180.0 |
H1 |
C2 |
C1 |
H |
0.1 |
0.0 |
H1 |
C2 |
C3 |
S |
358.9 |
0.2 |