PDB Chemical Component T54
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for T54
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C02 |
N01 |
1.469 |
1.348 |
| O03 |
C02 |
1.214 |
1.214 |
| C04 |
C02 |
1.566 |
1.506 |
| C05 |
C04 |
1.337 |
1.539 |
| C06 |
C05 |
1.613 |
1.543 |
| C07 |
C06 |
1.571 |
1.548 |
| C08 |
C07 |
1.360 |
1.548 |
| C09 |
C08 |
1.549 |
1.507 |
| C10 |
C09 |
1.416 |
1.384 |
| C11 |
C10 |
1.417 |
1.334 |
| S12 |
C11 |
1.751 |
1.759 |
| C13 |
S12 |
1.756 |
1.759 |
| C04 |
C08 |
1.666 |
1.542 |
| C09 |
C13 |
1.409 |
1.333 |
| C10 |
H101 |
1.080 |
1.081 |
| C13 |
H131 |
1.080 |
1.080 |
| C04 |
H041 |
1.100 |
1.090 |
| C05 |
H051 |
1.100 |
1.089 |
| C05 |
H052 |
1.101 |
1.090 |
| C06 |
H061 |
1.100 |
1.091 |
| C06 |
H062 |
1.099 |
1.090 |
| C07 |
H071 |
1.100 |
1.091 |
| C07 |
H072 |
1.100 |
1.091 |
| C08 |
H081 |
1.100 |
1.090 |
| C11 |
H111 |
1.080 |
1.080 |
| N01 |
H011 |
1.000 |
0.970 |
| N01 |
H012 |
1.000 |
0.970 |
Bond Angles for T54
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C04 |
C02 |
N01 |
119.0 |
120.0 |
| C02 |
N01 |
H011 |
120.0 |
120.0 |
| C02 |
N01 |
H012 |
120.0 |
120.0 |
| C05 |
C04 |
C08 |
105.7 |
106.6 |
| C05 |
C04 |
H041 |
112.2 |
110.0 |
| C06 |
C05 |
H051 |
110.3 |
110.1 |
| C06 |
C05 |
H052 |
110.3 |
110.0 |
| C07 |
C06 |
H061 |
110.6 |
110.5 |
| C07 |
C06 |
H062 |
110.6 |
110.6 |
| C04 |
C08 |
C07 |
104.3 |
104.2 |
| C08 |
C07 |
H071 |
110.8 |
110.8 |
| C08 |
C07 |
H072 |
110.8 |
110.9 |
| C10 |
C09 |
C08 |
121.0 |
122.5 |
| C09 |
C08 |
H081 |
108.9 |
110.5 |
| C10 |
C09 |
C13 |
116.4 |
114.9 |
| C09 |
C10 |
H101 |
122.7 |
122.5 |
| C11 |
C10 |
H101 |
122.7 |
122.5 |
| C13 |
S12 |
C11 |
97.2 |
91.0 |
| S12 |
C11 |
H111 |
126.8 |
125.2 |
| C09 |
C13 |
S12 |
105.5 |
109.6 |
| S12 |
C13 |
H131 |
127.2 |
125.2 |
| C08 |
C04 |
H041 |
107.6 |
110.0 |
| C04 |
C08 |
H081 |
107.5 |
110.5 |
| C09 |
C13 |
H131 |
127.3 |
125.2 |
| H051 |
C05 |
H052 |
109.5 |
110.0 |
| H061 |
C06 |
H062 |
109.5 |
110.4 |
| H071 |
C07 |
H072 |
109.5 |
110.6 |
| H011 |
N01 |
H012 |
120.0 |
120.0 |
Torsion Angles for T54
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H011 |
N01 |
C02 |
H012 |
180.1 |
180.1 |
| O03 |
C02 |
N01 |
H011 |
0.0 |
180.0 |
| O03 |
C02 |
N01 |
H012 |
180.0 |
360.0 |
| C04 |
C02 |
N01 |
H011 |
179.4 |
0.0 |
| C04 |
C02 |
N01 |
H012 |
359.3 |
180.0 |
| C05 |
C04 |
C02 |
N01 |
120.4 |
149.6 |
| C05 |
C04 |
C08 |
C07 |
39.5 |
23.6 |
| C08 |
C04 |
C05 |
H041 |
117.0 |
119.3 |
| C05 |
C04 |
C08 |
H081 |
280.8 |
264.9 |
| C06 |
C05 |
C04 |
C08 |
337.7 |
360.0 |
| C06 |
C05 |
C04 |
H041 |
220.7 |
240.7 |
| H051 |
C05 |
C06 |
H052 |
121.1 |
121.4 |
| C07 |
C06 |
C05 |
H051 |
242.9 |
217.1 |
| C07 |
C06 |
C05 |
H052 |
121.8 |
95.7 |
| C04 |
C08 |
C07 |
C06 |
324.5 |
322.0 |
| H061 |
C06 |
C07 |
H062 |
121.4 |
122.5 |
| C08 |
C07 |
C06 |
H061 |
264.1 |
279.2 |
| C08 |
C07 |
C06 |
H062 |
142.6 |
156.7 |
| C10 |
C09 |
C08 |
C07 |
165.3 |
218.8 |
| C07 |
C08 |
C04 |
H041 |
159.5 |
142.9 |
| C04 |
C08 |
C07 |
H081 |
244.2 |
241.3 |
| H071 |
C07 |
C08 |
H072 |
121.7 |
123.2 |
| C09 |
C08 |
C07 |
H071 |
84.8 |
85.0 |
| C09 |
C08 |
C07 |
H072 |
323.1 |
321.8 |
| C10 |
C09 |
C08 |
C13 |
180.9 |
180.0 |
| C08 |
C09 |
C10 |
H101 |
359.6 |
360.0 |
| C08 |
C09 |
C13 |
S12 |
180.5 |
179.7 |
| C09 |
C08 |
C04 |
H041 |
282.1 |
261.6 |
| C04 |
C08 |
C09 |
H081 |
117.9 |
122.6 |
| C08 |
C09 |
C13 |
H131 |
0.4 |
360.0 |
| C10 |
C09 |
C08 |
H081 |
290.4 |
341.5 |
| C11 |
C10 |
C09 |
H101 |
180.0 |
180.2 |
| C10 |
C09 |
C13 |
S12 |
359.6 |
359.6 |
| C10 |
C09 |
C13 |
H131 |
179.6 |
179.9 |
| C09 |
C10 |
C11 |
H101 |
180.0 |
179.8 |
| S12 |
C11 |
C10 |
H101 |
179.8 |
180.2 |
| C09 |
C13 |
S12 |
C11 |
0.2 |
0.3 |
| C11 |
S12 |
C13 |
H131 |
180.2 |
180.0 |
| C13 |
S12 |
C11 |
H111 |
180.0 |
179.9 |
| C09 |
C13 |
S12 |
H131 |
180.0 |
180.3 |
| C08 |
C04 |
C02 |
N01 |
238.0 |
266.8 |
| C05 |
C04 |
C08 |
H041 |
240.0 |
240.7 |
| C04 |
C08 |
C07 |
H071 |
205.4 |
203.7 |
| C04 |
C08 |
C07 |
H072 |
83.6 |
80.5 |
| C10 |
C09 |
C08 |
C04 |
48.3 |
104.1 |
| C09 |
C08 |
C04 |
H081 |
241.3 |
237.4 |
| C10 |
C09 |
C13 |
C08 |
179.1 |
180.0 |
| C13 |
C09 |
C10 |
H101 |
180.4 |
180.0 |
| S12 |
C13 |
C09 |
H131 |
180.0 |
179.7 |
| H101 |
C10 |
C09 |
C08 |
359.6 |
360.0 |
| H101 |
C10 |
C09 |
C13 |
180.4 |
180.0 |
| H131 |
C13 |
S12 |
C11 |
180.2 |
180.0 |
| C09 |
C13 |
H131 |
S12 |
180.0 |
179.6 |
| H041 |
C04 |
C02 |
N01 |
356.0 |
28.2 |
| C05 |
C04 |
H041 |
C08 |
115.8 |
117.1 |
| H041 |
C04 |
C08 |
C07 |
159.5 |
142.9 |
| H041 |
C04 |
C08 |
H081 |
40.8 |
24.2 |
| H051 |
C05 |
C04 |
C08 |
97.1 |
119.3 |
| H051 |
C05 |
C04 |
H041 |
340.2 |
360.0 |
| C06 |
C05 |
H051 |
H052 |
238.4 |
238.6 |
| H052 |
C05 |
C04 |
C08 |
218.2 |
240.7 |
| H052 |
C05 |
C04 |
H041 |
101.3 |
121.4 |
| C06 |
C05 |
H052 |
H051 |
121.6 |
121.4 |
| H061 |
C06 |
C05 |
H051 |
2.2 |
335.8 |
| H061 |
C06 |
C05 |
H052 |
241.1 |
214.4 |
| C07 |
C06 |
H061 |
H062 |
237.9 |
237.3 |
| H062 |
C06 |
C05 |
H051 |
123.6 |
98.3 |
| H062 |
C06 |
C05 |
H052 |
2.5 |
336.9 |
| C07 |
C06 |
H062 |
H061 |
122.1 |
122.6 |
| H071 |
C07 |
C06 |
H061 |
23.2 |
37.6 |
| H071 |
C07 |
C06 |
H062 |
261.8 |
275.1 |
| C08 |
C07 |
H071 |
H072 |
237.6 |
236.6 |
| H072 |
C07 |
C06 |
H061 |
144.9 |
160.7 |
| H072 |
C07 |
C06 |
H062 |
23.5 |
38.2 |
| C08 |
C07 |
H072 |
H071 |
122.5 |
123.3 |
| C04 |
C08 |
H081 |
C07 |
113.9 |
114.8 |
| H081 |
C08 |
C07 |
H071 |
321.2 |
322.4 |
| H081 |
C08 |
C07 |
H072 |
199.5 |
199.2 |
| H081 |
C08 |
C04 |
H041 |
40.8 |
24.2 |
| H111 |
C11 |
C10 |
H101 |
359.8 |
0.2 |
| C02 |
N01 |
H011 |
H012 |
179.9 |
179.9 |
| C02 |
N01 |
H012 |
H011 |
180.1 |
180.1 |