PDB Chemical Component T4V
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for T4V
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C |
1.494 |
1.506 |
O |
C1 |
1.227 |
1.213 |
C1 |
N |
1.343 |
1.348 |
N |
C2 |
1.467 |
1.471 |
C3 |
C2 |
1.516 |
1.532 |
N1 |
C3 |
1.465 |
1.469 |
N1 |
C4 |
1.468 |
1.470 |
C4 |
C5 |
1.509 |
1.507 |
C5 |
C6 |
1.372 |
1.361 |
C7 |
C6 |
1.405 |
1.394 |
C8 |
C7 |
1.356 |
1.361 |
C9 |
C8 |
1.414 |
1.405 |
C10 |
C9 |
1.413 |
1.406 |
C11 |
C10 |
1.357 |
1.361 |
C12 |
C11 |
1.402 |
1.394 |
C13 |
C12 |
1.362 |
1.361 |
C14 |
C13 |
1.420 |
1.405 |
C5 |
C14 |
1.424 |
1.405 |
C14 |
C9 |
1.423 |
1.417 |
C15 |
N1 |
1.461 |
1.469 |
C16 |
C15 |
1.514 |
1.532 |
N |
C16 |
1.465 |
1.470 |
C4 |
H6 |
1.099 |
1.090 |
C4 |
H7 |
1.100 |
1.090 |
C6 |
H8 |
1.080 |
1.080 |
C7 |
H9 |
1.080 |
1.080 |
C8 |
H10 |
1.080 |
1.080 |
C10 |
H11 |
1.080 |
1.079 |
C13 |
H14 |
1.080 |
1.080 |
C15 |
H16 |
1.100 |
1.090 |
C15 |
H15 |
1.100 |
1.090 |
C |
H |
1.100 |
1.090 |
C |
H20 |
1.100 |
1.091 |
C |
H1 |
1.100 |
1.090 |
C11 |
H12 |
1.080 |
1.081 |
C12 |
H13 |
1.080 |
1.080 |
C16 |
H18 |
1.100 |
1.090 |
C16 |
H17 |
1.100 |
1.090 |
C2 |
H3 |
1.100 |
1.090 |
C2 |
H2 |
1.100 |
1.090 |
C3 |
H5 |
1.100 |
1.090 |
C3 |
H4 |
1.099 |
1.090 |
Bond Angles for T4V
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C1 |
C |
H |
109.5 |
109.5 |
C1 |
C |
H20 |
109.4 |
109.4 |
C1 |
C |
H1 |
109.5 |
109.5 |
C1 |
N |
C2 |
116.0 |
120.9 |
C1 |
N |
C16 |
117.4 |
120.9 |
C16 |
N |
C2 |
113.6 |
118.3 |
N |
C2 |
H3 |
108.6 |
109.6 |
N |
C2 |
H2 |
108.5 |
109.6 |
N1 |
C3 |
C2 |
111.5 |
109.3 |
C3 |
C2 |
H3 |
108.5 |
109.6 |
C3 |
C2 |
H2 |
108.6 |
109.8 |
C4 |
N1 |
C3 |
111.0 |
111.0 |
C15 |
N1 |
C3 |
109.3 |
111.3 |
N1 |
C3 |
H5 |
108.9 |
109.5 |
N1 |
C3 |
H4 |
108.9 |
109.5 |
N1 |
C4 |
C5 |
112.3 |
109.5 |
N1 |
C4 |
H6 |
108.8 |
109.4 |
N1 |
C4 |
H7 |
108.7 |
109.5 |
C4 |
C5 |
C6 |
121.0 |
120.1 |
C4 |
C5 |
C14 |
119.8 |
120.2 |
C5 |
C4 |
H6 |
108.7 |
109.5 |
C5 |
C4 |
H7 |
108.8 |
109.5 |
C6 |
C5 |
C14 |
119.1 |
119.7 |
C5 |
C6 |
H8 |
119.1 |
119.5 |
C7 |
C6 |
H8 |
119.1 |
119.5 |
C8 |
C7 |
H9 |
119.9 |
119.5 |
C9 |
C8 |
H10 |
119.7 |
120.2 |
C11 |
C10 |
C9 |
120.8 |
119.6 |
C10 |
C9 |
C14 |
119.2 |
119.4 |
C9 |
C10 |
H11 |
119.6 |
120.2 |
C11 |
C10 |
H11 |
119.6 |
120.2 |
C13 |
C12 |
C11 |
120.2 |
121.0 |
C12 |
C11 |
H12 |
119.7 |
119.5 |
C12 |
C13 |
H14 |
119.4 |
120.2 |
C13 |
C12 |
H13 |
119.9 |
119.5 |
C5 |
C14 |
C13 |
123.2 |
121.3 |
C14 |
C13 |
H14 |
119.3 |
120.2 |
C5 |
C14 |
C9 |
118.9 |
119.3 |
C16 |
C15 |
H16 |
109.1 |
109.5 |
C16 |
C15 |
H15 |
109.1 |
109.5 |
N |
C16 |
H18 |
108.8 |
109.6 |
N |
C16 |
H17 |
108.8 |
109.6 |
H6 |
C4 |
H7 |
109.5 |
109.5 |
H16 |
C15 |
H15 |
109.5 |
109.5 |
H |
C |
H20 |
109.5 |
109.5 |
H |
C |
H1 |
109.4 |
109.5 |
H20 |
C |
H1 |
109.5 |
109.4 |
H18 |
C16 |
H17 |
109.5 |
109.8 |
H3 |
C2 |
H2 |
109.5 |
109.6 |
H5 |
C3 |
H4 |
109.5 |
109.6 |
Torsion Angles for T4V
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C |
C1 |
N |
C2 |
35.2 |
180.0 |
C |
C1 |
N |
C16 |
256.3 |
0.0 |
H |
C |
C1 |
H20 |
240.0 |
240.0 |
H |
C |
C1 |
H1 |
120.0 |
120.1 |
H20 |
C |
C1 |
H1 |
240.0 |
240.0 |
O |
C1 |
C |
H |
360.0 |
90.0 |
O |
C1 |
C |
H20 |
120.0 |
210.0 |
O |
C1 |
C |
H1 |
240.0 |
329.9 |
O |
C1 |
N |
C2 |
213.6 |
360.0 |
O |
C1 |
N |
C16 |
74.6 |
180.1 |
C16 |
N |
C1 |
C2 |
221.0 |
180.1 |
C1 |
N |
C2 |
H3 |
26.3 |
350.9 |
C1 |
N |
C2 |
H2 |
145.2 |
111.3 |
C1 |
N |
C16 |
H18 |
331.5 |
9.1 |
C1 |
N |
C16 |
H17 |
212.3 |
248.5 |
C1 |
N |
C2 |
C16 |
219.5 |
180.1 |
N1 |
C3 |
C2 |
N |
308.4 |
306.2 |
C3 |
C2 |
N |
H3 |
239.5 |
240.3 |
C3 |
C2 |
N |
H2 |
120.6 |
120.0 |
C2 |
N |
C16 |
H18 |
191.6 |
189.1 |
C2 |
N |
C16 |
H17 |
72.4 |
68.6 |
H3 |
C2 |
N |
H2 |
241.1 |
239.7 |
N |
C2 |
C3 |
H3 |
120.6 |
119.7 |
N |
C2 |
C3 |
H2 |
239.5 |
240.2 |
C4 |
N1 |
C3 |
C2 |
181.5 |
187.2 |
C15 |
N1 |
C3 |
C2 |
58.5 |
63.1 |
N1 |
C3 |
C2 |
H5 |
239.7 |
120.0 |
N1 |
C3 |
C2 |
H4 |
120.3 |
240.1 |
H3 |
C2 |
C3 |
H2 |
118.9 |
120.4 |
N1 |
C3 |
C2 |
H3 |
187.8 |
186.5 |
N1 |
C3 |
C2 |
H2 |
68.9 |
66.0 |
C3 |
N1 |
C4 |
C5 |
35.9 |
164.2 |
C3 |
N1 |
C4 |
H6 |
156.3 |
284.2 |
C3 |
N1 |
C4 |
H7 |
275.5 |
44.2 |
H5 |
C3 |
N1 |
H4 |
119.4 |
239.8 |
C15 |
N1 |
C4 |
C3 |
122.0 |
124.3 |
C4 |
N1 |
C3 |
H5 |
61.2 |
307.2 |
C4 |
N1 |
C3 |
H4 |
301.9 |
67.4 |
N1 |
C4 |
C5 |
C6 |
259.4 |
105.5 |
N1 |
C4 |
C5 |
C14 |
76.1 |
285.2 |
C5 |
C4 |
N1 |
H6 |
239.6 |
240.0 |
C5 |
C4 |
N1 |
H7 |
120.4 |
120.0 |
H6 |
C4 |
N1 |
H7 |
240.8 |
240.0 |
C5 |
C4 |
N1 |
C3 |
35.9 |
164.2 |
N1 |
C4 |
C5 |
H6 |
120.4 |
120.0 |
N1 |
C4 |
C5 |
H7 |
239.6 |
240.0 |
C6 |
C5 |
C4 |
C14 |
183.3 |
180.3 |
C4 |
C5 |
C6 |
H8 |
358.7 |
359.9 |
C4 |
C5 |
C14 |
C13 |
2.3 |
0.0 |
C4 |
C5 |
C14 |
C9 |
181.9 |
179.7 |
H6 |
C4 |
C5 |
H7 |
119.2 |
120.0 |
C4 |
C5 |
C6 |
C14 |
176.7 |
179.7 |
C6 |
C5 |
C4 |
H6 |
139.0 |
345.6 |
C6 |
C5 |
C4 |
H7 |
19.8 |
225.5 |
C7 |
C6 |
C5 |
H8 |
180.0 |
180.1 |
C6 |
C5 |
C14 |
C13 |
179.1 |
179.7 |
C6 |
C5 |
C14 |
C9 |
358.6 |
359.4 |
C7 |
C6 |
C5 |
C14 |
2.0 |
0.3 |
C5 |
C6 |
C7 |
H8 |
180.0 |
179.9 |
C8 |
C7 |
C6 |
H8 |
178.7 |
180.1 |
C9 |
C8 |
C7 |
H9 |
180.1 |
180.0 |
C5 |
C14 |
C9 |
C8 |
0.2 |
0.6 |
C10 |
C9 |
C8 |
H10 |
0.5 |
0.4 |
C11 |
C10 |
C9 |
H11 |
180.0 |
180.0 |
C5 |
C14 |
C9 |
C10 |
180.2 |
180.0 |
C11 |
C10 |
C9 |
C14 |
359.4 |
0.0 |
C9 |
C10 |
C11 |
H11 |
180.0 |
180.0 |
C12 |
C11 |
C10 |
C9 |
1.5 |
0.2 |
C12 |
C11 |
C10 |
H11 |
181.5 |
180.3 |
C11 |
C12 |
C13 |
H14 |
180.7 |
179.9 |
C13 |
C12 |
C11 |
H13 |
180.0 |
180.0 |
C13 |
C12 |
C11 |
H12 |
178.5 |
180.0 |
C5 |
C14 |
C13 |
C12 |
179.8 |
180.0 |
C14 |
C13 |
C12 |
H14 |
180.0 |
180.1 |
C10 |
C9 |
C14 |
C13 |
359.7 |
359.7 |
C12 |
C13 |
C14 |
H14 |
180.0 |
179.9 |
C14 |
C13 |
C12 |
H13 |
180.7 |
180.0 |
C5 |
C14 |
C13 |
C9 |
179.6 |
179.7 |
C4 |
C5 |
C14 |
C6 |
183.2 |
180.3 |
C14 |
C5 |
C4 |
H6 |
315.7 |
165.2 |
C14 |
C5 |
C4 |
H7 |
196.5 |
45.2 |
C14 |
C5 |
C6 |
H8 |
182.0 |
180.3 |
C10 |
C9 |
C14 |
C5 |
180.2 |
180.0 |
C5 |
C14 |
C13 |
H14 |
359.8 |
0.0 |
C14 |
C9 |
C8 |
H10 |
180.5 |
179.7 |
C14 |
C9 |
C10 |
H11 |
179.4 |
180.0 |
C5 |
C14 |
C9 |
C13 |
180.4 |
180.3 |
C9 |
C14 |
C13 |
H14 |
180.2 |
180.4 |
C4 |
N1 |
C15 |
C3 |
237.1 |
235.9 |
C15 |
N1 |
C3 |
H5 |
298.2 |
183.1 |
C15 |
N1 |
C3 |
H4 |
178.8 |
303.2 |
C15 |
N1 |
C4 |
H6 |
278.3 |
48.5 |
C15 |
N1 |
C4 |
H7 |
37.4 |
168.5 |
C16 |
C15 |
N1 |
C3 |
299.6 |
296.9 |
H16 |
C15 |
C16 |
H15 |
119.6 |
120.1 |
C1 |
N |
C16 |
C2 |
139.9 |
179.9 |
C16 |
N |
C2 |
H3 |
166.8 |
170.9 |
C16 |
N |
C2 |
H2 |
285.7 |
291.2 |
N |
C16 |
C15 |
H16 |
295.3 |
293.8 |
N |
C16 |
C15 |
H15 |
175.7 |
173.8 |
H18 |
C16 |
N |
H17 |
119.2 |
120.6 |
H6 |
C4 |
N1 |
C3 |
156.3 |
284.2 |
N1 |
C4 |
H6 |
C5 |
237.4 |
240.0 |
N1 |
C4 |
H6 |
H7 |
118.7 |
120.0 |
H6 |
C4 |
C5 |
C6 |
139.0 |
345.6 |
H6 |
C4 |
C5 |
C14 |
315.7 |
165.2 |
C5 |
C4 |
H6 |
H7 |
241.3 |
240.0 |
H7 |
C4 |
N1 |
C3 |
275.5 |
44.2 |
N1 |
C4 |
H7 |
C5 |
122.6 |
120.0 |
N1 |
C4 |
H7 |
H6 |
241.3 |
240.0 |
H7 |
C4 |
C5 |
C6 |
19.8 |
225.5 |
H7 |
C4 |
C5 |
C14 |
196.5 |
45.2 |
C5 |
C4 |
H7 |
H6 |
118.7 |
120.0 |
H8 |
C6 |
C5 |
C14 |
182.0 |
180.3 |
H9 |
C7 |
C6 |
H8 |
358.7 |
0.1 |
H10 |
C8 |
C7 |
H9 |
0.1 |
359.9 |
C11 |
C10 |
H11 |
C9 |
180.0 |
180.0 |
H11 |
C10 |
C9 |
C14 |
179.4 |
180.0 |
H14 |
C13 |
C12 |
C11 |
180.7 |
179.9 |
H14 |
C13 |
C12 |
H13 |
0.7 |
359.9 |
H16 |
C15 |
N1 |
C3 |
59.8 |
56.8 |
C16 |
C15 |
H16 |
H15 |
240.6 |
239.9 |
H15 |
C15 |
N1 |
C3 |
179.3 |
176.9 |
C16 |
C15 |
H15 |
H16 |
119.3 |
120.1 |
C1 |
C |
H |
H20 |
120.0 |
120.0 |
C1 |
C |
H |
H1 |
240.0 |
240.0 |
H20 |
C |
H |
H1 |
120.0 |
120.0 |
C1 |
C |
H20 |
H |
240.0 |
240.0 |
C1 |
C |
H20 |
H1 |
120.0 |
120.0 |
H |
C |
H20 |
H1 |
240.0 |
240.0 |
C1 |
C |
H1 |
H |
120.0 |
120.0 |
C1 |
C |
H1 |
H20 |
240.0 |
240.0 |
H |
C |
H1 |
H20 |
120.0 |
120.0 |
H12 |
C11 |
C10 |
C9 |
181.5 |
180.0 |
H12 |
C11 |
C10 |
H11 |
1.5 |
0.0 |
C13 |
C12 |
H13 |
C11 |
180.0 |
180.0 |
H13 |
C12 |
C11 |
H12 |
358.5 |
360.0 |
H13 |
C12 |
C13 |
H14 |
0.7 |
359.9 |
H18 |
C16 |
N |
C2 |
191.6 |
189.1 |
H18 |
C16 |
C15 |
H16 |
55.7 |
53.6 |
H18 |
C16 |
C15 |
H15 |
296.1 |
293.5 |
N |
C16 |
H18 |
H17 |
241.2 |
239.6 |
H17 |
C16 |
N |
C2 |
72.4 |
68.6 |
H17 |
C16 |
C15 |
H16 |
174.9 |
174.2 |
H17 |
C16 |
C15 |
H15 |
55.3 |
54.1 |
N |
C16 |
H17 |
H18 |
118.8 |
120.5 |
N |
C2 |
H3 |
H2 |
118.3 |
120.3 |
C3 |
C2 |
H3 |
H2 |
241.6 |
239.4 |
N |
C2 |
H2 |
H3 |
241.6 |
239.6 |
C3 |
C2 |
H2 |
H3 |
118.3 |
120.5 |
N1 |
C3 |
H5 |
C2 |
121.9 |
240.2 |
H5 |
C3 |
C2 |
H3 |
308.1 |
66.5 |
H5 |
C3 |
C2 |
H2 |
189.2 |
306.1 |
N1 |
C3 |
H5 |
H4 |
241.0 |
120.1 |
N1 |
C3 |
H4 |
C2 |
238.1 |
119.8 |
H4 |
C3 |
C2 |
H3 |
67.5 |
306.3 |
H4 |
C3 |
C2 |
H2 |
308.6 |
185.9 |
N1 |
C3 |
H4 |
H5 |
119.0 |
239.9 |