PDB Chemical Component T4S

Experimental Model

Chemical Description

Name 1-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO-PENTOFURANOSYL)-4-HYDROSELENO-5-METHYLPYRIMIDIN-2(1H)-ONE
Formula C10 H15 N2 O7 P Se
Formal charge 0
Molecular weight 385.169 g/mol
Component type DNA LINKING
Nonstandard Parent Id DT

Chemical features

Atom count 36
Chiral atom count 3
Chiral atoms C4' C1' C3'
Observed leaving atoms OP3 HO3'
Bond count 37
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-5-methyl-4-selanylpyrimidin-2(1H)-one
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-3-hydroxy-5-(5-methyl-2-oxo-4-selanyl-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CC1=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C(=O)N=C1[SeH]
SMILES (CACTVS) CC1=CN([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C(=O)N=C1[SeH]
Stereo SMILES (OpenEye) CC1=CN(C(=O)N=C1[SeH])[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O
InChI descriptor InChI=1S/C10H15N2O7PSe/c1-5-3-12(10(14)11-9(5)21)8-2-6(13)7(19-8)4-18-20(15,16)17/h3,6-8,13H,2,4H2,1H3,(H,11,14,21)(H2,15,16,17)/t6-,7+,8+/m0/s1
InChIKey descriptor HXENXQZDSWUILN-XLPZGREQSA-N

Status Information

Last modified 2011-06-04
Created 2006-11-06
Release status REL
Model PDB code 2NSK
Processing site PDBJ