PDB Chemical Component T4M
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for T4M
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C |
1.524 |
1.530 |
| N |
C1 |
1.471 |
1.465 |
| C2 |
N |
1.344 |
1.348 |
| C2 |
O |
1.233 |
1.213 |
| C3 |
C2 |
1.523 |
1.507 |
| C1 |
C4 |
1.523 |
1.507 |
| C4 |
C5 |
1.375 |
1.361 |
| C6 |
C5 |
1.407 |
1.394 |
| C7 |
C6 |
1.355 |
1.360 |
| C8 |
C7 |
1.414 |
1.406 |
| C9 |
C8 |
1.416 |
1.405 |
| C10 |
C9 |
1.357 |
1.362 |
| C11 |
C10 |
1.401 |
1.393 |
| C12 |
C11 |
1.364 |
1.361 |
| C13 |
C12 |
1.423 |
1.406 |
| C4 |
C13 |
1.441 |
1.406 |
| C13 |
C8 |
1.427 |
1.417 |
| C5 |
H7 |
1.080 |
1.080 |
| C6 |
H8 |
1.080 |
1.079 |
| C7 |
H9 |
1.080 |
1.080 |
| C10 |
H11 |
1.080 |
1.080 |
| N |
H4 |
1.000 |
0.971 |
| C |
H1 |
1.100 |
1.090 |
| C |
H2 |
1.100 |
1.090 |
| C |
H |
1.100 |
1.090 |
| C1 |
H3 |
1.100 |
1.090 |
| C11 |
H12 |
1.080 |
1.080 |
| C12 |
H13 |
1.080 |
1.080 |
| C3 |
H14 |
1.100 |
1.091 |
| C3 |
H6 |
1.100 |
1.090 |
| C3 |
H5 |
1.100 |
1.090 |
| C9 |
H10 |
1.080 |
1.079 |
Bond Angles for T4M
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
C1 |
C |
112.2 |
109.5 |
| C1 |
C |
H1 |
109.5 |
109.5 |
| C1 |
C |
H2 |
109.4 |
109.5 |
| C1 |
C |
H |
109.5 |
109.4 |
| C1 |
N |
H4 |
116.1 |
120.0 |
| N |
C1 |
H3 |
107.4 |
109.5 |
| C2 |
N |
H4 |
116.1 |
120.0 |
| C5 |
C4 |
C13 |
118.9 |
119.6 |
| C4 |
C5 |
H7 |
119.0 |
119.5 |
| C6 |
C5 |
H7 |
119.1 |
119.5 |
| C7 |
C6 |
H8 |
120.0 |
119.6 |
| C8 |
C7 |
H9 |
119.5 |
120.1 |
| C11 |
C10 |
C9 |
120.3 |
121.0 |
| C9 |
C10 |
H11 |
119.9 |
119.5 |
| C10 |
C9 |
H10 |
119.6 |
120.2 |
| C11 |
C10 |
H11 |
119.8 |
119.5 |
| C13 |
C12 |
C11 |
121.6 |
119.6 |
| C12 |
C11 |
H12 |
119.8 |
119.5 |
| C4 |
C13 |
C12 |
124.3 |
121.3 |
| C13 |
C12 |
H13 |
119.2 |
120.2 |
| C4 |
C13 |
C8 |
118.6 |
119.4 |
| H1 |
C |
H2 |
109.5 |
109.5 |
| H1 |
C |
H |
109.5 |
109.5 |
| H2 |
C |
H |
109.4 |
109.5 |
| H14 |
C3 |
H6 |
109.5 |
109.5 |
| H14 |
C3 |
H5 |
109.4 |
109.5 |
| H6 |
C3 |
H5 |
109.5 |
109.5 |
Torsion Angles for T4M
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C |
C1 |
N |
H4 |
152.6 |
267.2 |
| N |
C1 |
C |
H3 |
242.7 |
240.0 |
| H1 |
C |
C1 |
H2 |
240.0 |
239.9 |
| H1 |
C |
C1 |
H |
120.0 |
120.0 |
| H2 |
C |
C1 |
H |
240.0 |
240.0 |
| N |
C1 |
C |
H1 |
180.0 |
60.0 |
| N |
C1 |
C |
H2 |
300.0 |
180.0 |
| N |
C1 |
C |
H |
60.0 |
300.0 |
| C2 |
N |
C1 |
H4 |
180.0 |
180.1 |
| C1 |
N |
C2 |
H4 |
180.0 |
179.9 |
| C2 |
N |
C1 |
H3 |
215.6 |
327.2 |
| O |
C2 |
N |
H4 |
47.5 |
180.1 |
| C3 |
C2 |
N |
H4 |
235.6 |
0.1 |
| C1 |
C4 |
C5 |
H7 |
0.8 |
359.8 |
| C1 |
C4 |
C13 |
C12 |
359.5 |
0.3 |
| C6 |
C5 |
C4 |
H7 |
180.0 |
180.0 |
| C5 |
C4 |
C13 |
C12 |
180.0 |
180.0 |
| C5 |
C4 |
C13 |
C8 |
359.9 |
0.0 |
| C6 |
C5 |
C4 |
C13 |
0.3 |
360.0 |
| C4 |
C5 |
C6 |
H7 |
180.0 |
180.0 |
| C7 |
C6 |
C5 |
H7 |
179.6 |
180.0 |
| C8 |
C7 |
C6 |
H8 |
180.2 |
180.0 |
| C4 |
C13 |
C8 |
C7 |
359.9 |
0.0 |
| C9 |
C8 |
C7 |
H9 |
0.1 |
0.1 |
| C11 |
C10 |
C9 |
H11 |
180.0 |
180.0 |
| C9 |
C10 |
C11 |
H11 |
180.0 |
180.0 |
| C11 |
C10 |
C9 |
H10 |
180.2 |
180.0 |
| C12 |
C11 |
C10 |
C9 |
360.0 |
0.0 |
| C12 |
C11 |
C10 |
H11 |
180.0 |
180.1 |
| C4 |
C13 |
C12 |
C11 |
180.4 |
180.1 |
| C13 |
C12 |
C11 |
H13 |
180.0 |
179.9 |
| C13 |
C12 |
C11 |
H12 |
179.7 |
180.0 |
| C4 |
C13 |
C12 |
C8 |
180.0 |
180.0 |
| C13 |
C4 |
C5 |
H7 |
180.3 |
180.0 |
| C4 |
C13 |
C12 |
H13 |
0.4 |
359.9 |
| C13 |
C8 |
C7 |
H9 |
180.0 |
180.0 |
| C4 |
C13 |
C8 |
C12 |
180.0 |
180.0 |
| H7 |
C5 |
C4 |
C13 |
180.3 |
180.0 |
| H8 |
C6 |
C5 |
H7 |
359.6 |
360.0 |
| H9 |
C7 |
C6 |
H8 |
0.2 |
360.0 |
| C11 |
C10 |
H11 |
C9 |
180.0 |
180.0 |
| H11 |
C10 |
C9 |
H10 |
0.2 |
360.0 |
| H4 |
N |
C1 |
C |
152.6 |
267.2 |
| H4 |
N |
C1 |
H3 |
35.6 |
147.2 |
| C1 |
C |
H1 |
H2 |
120.0 |
120.0 |
| C1 |
C |
H1 |
H |
240.0 |
240.0 |
| H2 |
C |
H1 |
H |
120.0 |
120.0 |
| C1 |
C |
H2 |
H1 |
240.0 |
239.9 |
| C1 |
C |
H2 |
H |
120.0 |
120.0 |
| H1 |
C |
H2 |
H |
240.0 |
240.0 |
| C1 |
C |
H |
H1 |
120.1 |
120.0 |
| C1 |
C |
H |
H2 |
240.0 |
240.0 |
| H1 |
C |
H |
H2 |
120.0 |
120.0 |
| N |
C1 |
H3 |
C |
120.5 |
120.0 |
| H3 |
C1 |
C |
H1 |
297.4 |
180.0 |
| H3 |
C1 |
C |
H2 |
57.3 |
300.1 |
| H3 |
C1 |
C |
H |
177.3 |
60.0 |
| H3 |
C1 |
N |
H4 |
35.6 |
147.2 |
| H12 |
C11 |
C10 |
C9 |
179.9 |
180.0 |
| H12 |
C11 |
C10 |
H11 |
359.9 |
0.0 |
| C13 |
C12 |
H13 |
C11 |
180.0 |
180.1 |
| H13 |
C12 |
C11 |
H12 |
359.7 |
0.1 |
| H6 |
C3 |
H14 |
H5 |
120.0 |
120.0 |
| H14 |
C3 |
H6 |
H5 |
240.0 |
240.0 |
| H14 |
C3 |
H5 |
H6 |
120.0 |
120.1 |
| H10 |
C9 |
C10 |
H11 |
0.2 |
360.0 |