PDB Chemical Component T4J

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for T4J

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C	1.493	1.507
C1	O	1.217	1.214
N	C1	1.331	1.347
C2	N	1.404	1.400
C3	C2	1.390	1.390
C4	C3	1.377	1.383
C5	C4	1.385	1.381
C6	C5	1.390	1.396
C6	C7	1.395	1.394
C7	C2	1.391	1.387
C8	C6	1.501	1.478
O1	C8	1.230	1.216
C8	N1	1.342	1.348
N1	C9	1.468	1.464
C10	C9	1.512	1.533
S	C10	1.798	1.817
C11	S	1.799	1.818
C12	C11	1.512	1.532
N1	C12	1.467	1.464
C4	H4	1.080	1.080
C5	H5	1.080	1.079
C7	H6	1.080	1.080
C10	H9	1.100	1.089
C10	H10	1.100	1.089
N	H2	1.000	0.970
C	H	1.100	1.090
C	H15	1.100	1.090
C	H1	1.100	1.089
C11	H11	1.100	1.089
C11	H12	1.100	1.091
C12	H13	1.100	1.090
C12	H14	1.100	1.090
C3	H3	1.080	1.079
C9	H7	1.100	1.089
C9	H8	1.100	1.090

Bond Angles for T4J

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N	C1	C	110.3	120.0
C1	C	H	109.5	109.5
C1	C	H15	109.5	109.5
C1	C	H1	109.5	109.5
N	C1	O	126.4	120.0
C1	N	H2	116.4	120.0
C7	C2	N	121.5	120.0
C2	N	H2	116.3	119.9
C4	C3	C2	119.4	120.2
C5	C4	C3	120.3	120.2
C3	C4	H4	119.8	119.9
C4	C3	H3	120.3	119.9
C5	C4	H4	119.8	119.9
C6	C5	H5	119.7	120.1
C6	C7	C2	119.2	119.8
C6	C7	H6	120.4	120.1
C2	C7	H6	120.4	120.1
C8	N1	C9	123.7	119.6
C8	N1	C12	122.9	119.6
N1	C9	C10	110.8	109.5
C12	N1	C9	113.3	120.7
N1	C9	H7	109.1	109.5
N1	C9	H8	109.2	109.5
C9	C10	H9	108.8	109.6
C9	C10	H10	108.8	109.5
C10	C9	H7	109.2	109.4
C10	C9	H8	109.1	109.5
S	C10	H9	108.7	109.6
S	C10	H10	108.8	109.8
C12	C11	S	112.6	108.8
S	C11	H11	108.7	109.6
S	C11	H12	108.7	109.6
N1	C12	C11	111.0	109.5
C12	C11	H11	108.7	109.6
C12	C11	H12	108.7	109.7
N1	C12	H13	109.1	109.5
N1	C12	H14	109.1	109.5
H9	C10	H10	109.5	109.6
H	C	H15	109.5	109.4
H	C	H1	109.4	109.5
H15	C	H1	109.5	109.5
H11	C11	H12	109.5	109.6
H13	C12	H14	109.5	109.5
H7	C9	H8	109.5	109.5

Torsion Angles for T4J

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N	C1	C	O	179.7	179.9
C	C1	N	H2	23.7	5.2
H	C	C1	H15	239.9	240.1
H	C	C1	H1	119.9	120.0
H15	C	C1	H1	240.0	240.0
N	C1	O	C	180.4	180.1
O	C1	C	H	360.0	270.1
O	C1	C	H15	120.0	30.0
O	C1	C	H1	240.0	150.1
O	C1	N	H2	203.4	185.1
N	C1	C	H	179.7	90.0
N	C1	C	H15	299.7	210.0
N	C1	C	H1	59.7	330.0
C7	C2	N	C1	50.0	26.9
C2	N	C1	H2	180.0	179.9
C1	N	C2	H2	180.0	180.1
C4	C3	C2	N	178.9	180.0
C6	C7	C2	N	180.5	180.0
N	C2	C7	H6	0.6	359.9
C3	C2	N	H2	51.7	26.7
C5	C4	C3	C2	360.0	0.0
C2	C3	C4	H4	179.9	180.3
C4	C3	C2	H3	180.0	179.7
C3	C2	C7	H6	178.7	180.0
C5	C4	C3	H4	180.0	179.7
C3	C4	C5	H4	180.0	180.3
C5	C4	C3	H3	180.0	179.7
C6	C5	C4	C3	0.1	360.0
C6	C5	C4	H4	180.1	179.7
C7	C6	C5	H5	179.3	180.0
C2	C7	C6	H6	180.0	179.9
C7	C2	N	H2	229.9	206.8
C4	C3	C2	C7	0.7	359.9
C6	C7	C2	H6	180.0	180.1
C8	C6	C5	H5	0.6	360.0
C8	C6	C7	C2	180.0	180.0
C8	C6	C7	H6	360.0	0.1
C6	C8	N1	C9	5.2	355.1
C6	C8	N1	C12	182.6	175.4
C8	N1	C9	C10	242.1	115.2
C12	N1	C8	C9	177.4	180.4
C8	N1	C9	H7	2.3	235.2
C8	N1	C9	H8	121.9	355.3
C8	N1	C12	C11	118.4	244.8
C8	N1	C12	H13	358.2	4.8
C8	N1	C12	H14	238.7	124.8
C8	N1	C9	C12	177.6	180.4
N1	C9	C10	H9	57.1	177.4
N1	C9	C10	H10	176.3	297.8
C10	C9	N1	H7	239.8	240.0
C10	C9	N1	H8	120.2	120.0
C9	N1	C12	C11	296.1	65.1
C9	N1	C12	H13	175.8	185.1
C9	N1	C12	H14	56.3	305.2
H7	C9	N1	H8	240.4	240.0
C12	N1	C9	C10	64.5	294.9
N1	C9	C10	H7	120.2	120.0
N1	C9	C10	H8	239.8	240.0
S	C10	C9	H9	239.6	240.3
S	C10	C9	H10	120.4	119.9
H9	C10	C9	H10	240.8	239.7
H7	C9	C10	H8	119.6	120.0
C9	C10	S	H9	120.4	119.7
C9	C10	S	H10	239.6	240.2
S	C10	C9	H7	176.5	297.7
S	C10	C9	H8	56.9	177.7
H9	C10	S	H10	119.1	120.5
C11	S	C10	H9	294.2	185.7
C11	S	C10	H10	175.1	65.2
N1	C12	C11	S	62.2	302.3
C12	C11	S	H11	239.5	119.8
C12	C11	S	H12	120.5	240.1
H11	C11	S	H12	241.0	120.3
C11	C12	N1	C9	296.1	65.1
S	C11	C12	H11	120.5	240.2
S	C11	C12	H12	239.5	119.8
N1	C12	C11	H13	239.8	120.0
N1	C12	C11	H14	120.2	240.0
H11	C11	C12	H12	119.1	239.6
C8	N1	C12	C9	182.4	179.6
C12	N1	C9	H7	184.7	54.8
C12	N1	C9	H8	304.3	174.9
N1	C12	C11	H11	301.8	62.2
N1	C12	C11	H12	182.7	182.5
H13	C12	N1	H14	119.5	240.0
H4	C4	C3	C2	179.9	180.3
C5	C4	H4	C3	180.0	180.3
H4	C4	C3	H3	359.9	360.0
H5	C5	C4	C3	180.1	180.0
H5	C5	C4	H4	0.1	359.7
H6	C7	C2	N	0.6	359.9
C6	C7	H6	C2	180.0	179.9
C9	C10	H9	H10	118.7	120.2
H9	C10	C9	H7	296.9	57.4
H9	C10	C9	H8	177.3	297.4
S	C10	H9	H10	241.3	239.5
C9	C10	H10	H9	241.3	239.7
H10	C10	C9	H7	56.1	177.7
H10	C10	C9	H8	296.5	57.7
S	C10	H10	H9	118.7	120.4
H2	N	C1	C	23.7	5.2
H2	N	C1	O	203.4	185.1
C1	C	H	H15	120.0	120.0
C1	C	H	H1	240.0	240.0
H15	C	H	H1	120.0	120.0
C1	C	H15	H	240.0	240.0
C1	C	H15	H1	120.0	120.0
H	C	H15	H1	240.0	240.0
C1	C	H1	H	120.0	120.0
C1	C	H1	H15	240.0	240.0
H	C	H1	H15	120.0	120.0
C12	C11	H11	S	122.9	240.7
S	C11	H11	H12	118.5	239.7
C12	C11	H11	H12	241.4	120.4
C12	C11	H12	S	237.1	119.4
S	C11	H12	H11	241.5	120.3
C12	C11	H12	H11	118.6	239.6
H13	C12	N1	C9	175.8	185.1
H13	C12	C11	S	182.5	182.3
N1	C12	H13	C11	121.4	240.0
H13	C12	C11	H11	62.0	302.1
H13	C12	C11	H12	303.0	62.5
N1	C12	H13	H14	240.7	120.0
H14	C12	N1	C9	56.3	305.2
H14	C12	C11	S	302.0	62.3
N1	C12	H14	C11	238.6	120.0
H14	C12	C11	H11	181.6	182.1
H14	C12	C11	H12	62.5	302.5
N1	C12	H14	H13	119.3	239.9
C4	C3	H3	C2	180.0	180.3
H3	C3	C4	H4	359.9	360.0
N1	C9	H7	C10	238.8	240.0
N1	C9	H7	H8	119.4	120.0
H7	C9	C10	H9	296.9	57.4
H7	C9	C10	H10	56.1	177.7
C10	C9	H7	H8	240.6	240.0
N1	C9	H8	C10	121.2	120.0
N1	C9	H8	H7	240.6	240.0
H8	C9	C10	H9	177.3	297.4
H8	C9	C10	H10	296.5	57.7
C10	C9	H8	H7	119.4	120.0