PDB Chemical Component T4D

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for T4D

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C	1.499	1.507
C1	O	1.222	1.213
N	C1	1.352	1.347
C2	N	1.470	1.469
C3	C2	1.508	1.533
N1	C3	1.469	1.469
N1	C4	1.470	1.469
C4	C5	1.505	1.534
C5	N	1.465	1.470
S	N1	1.640	1.656
S	O1	1.428	1.421
S	O2	1.429	1.420
C6	S	1.771	1.762
C7	C6	1.393	1.380
C8	C7	1.383	1.385
C9	C8	1.376	1.383
C10	C9	1.382	1.380
C11	C10	1.390	1.396
C11	C6	1.406	1.396
C12	C11	1.440	1.432
N2	C12	1.147	1.136
C4	H6	1.100	1.090
C4	H7	1.100	1.090
C5	H8	1.100	1.090
C5	H9	1.100	1.090
C7	H10	1.080	1.079
C8	H11	1.080	1.080
C10	H13	1.080	1.080
C	H	1.100	1.089
C	H14	1.100	1.091
C	H1	1.100	1.090
C2	H2	1.100	1.090
C2	H3	1.100	1.090
C3	H4	1.100	1.090
C3	H5	1.100	1.090
C9	H12	1.080	1.080

Bond Angles for T4D

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N	C1	C	118.0	120.0
C1	C	H	109.5	109.5
C1	C	H14	109.5	109.5
C1	C	H1	109.4	109.4
N	C1	O	122.9	120.0
C5	N	C1	120.2	120.6
N1	C3	C2	107.1	108.7
C3	C2	H2	109.1	109.6
C3	C2	H3	109.1	109.8
C4	N1	C3	112.1	118.8
N1	C3	H4	110.0	109.6
N1	C3	H5	110.1	109.6
N1	C4	C5	106.8	108.6
N1	C4	H6	110.1	109.7
N1	C4	H7	110.1	109.6
C4	C5	N	109.6	108.6
C5	C4	H6	110.2	109.6
C5	C4	H7	110.1	109.6
C4	C5	H8	109.4	109.6
C4	C5	H9	109.4	109.6
N	C5	H8	109.4	109.6
N	C5	H9	109.4	109.6
C6	S	O1	108.2	106.4
C6	S	O2	108.4	106.4
C7	C6	S	120.0	120.0
C11	C6	S	121.1	120.1
C8	C7	H10	119.9	119.9
C9	C8	H11	119.7	119.9
C11	C10	C9	119.7	119.9
C9	C10	H13	120.2	120.1
C10	C9	H12	119.8	119.9
C11	C10	H13	120.1	120.1
H6	C4	H7	109.5	109.7
H8	C5	H9	109.5	109.7
H	C	H14	109.5	109.5
H	C	H1	109.5	109.5
H14	C	H1	109.5	109.4
H2	C2	H3	109.4	109.6
H4	C3	H5	109.5	109.7

Torsion Angles for T4D

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N	C1	C	O	179.2	180.0
C5	N	C1	C	183.9	354.8
H	C	C1	H14	240.0	240.0
H	C	C1	H1	120.0	120.1
H14	C	C1	H1	240.0	240.1
N	C1	O	C	180.9	180.0
O	C1	C	H	0.0	264.7
O	C1	C	H14	120.0	24.7
O	C1	C	H1	240.0	144.7
C5	N	C1	O	3.0	174.8
N	C1	C	H	179.2	84.7
N	C1	C	H14	299.2	204.7
N	C1	C	H1	59.2	324.7
C4	C5	N	C1	237.5	235.2
C1	N	C5	H8	117.5	115.5
C1	N	C5	H9	357.5	355.0
N1	C3	C2	N	55.4	49.4
C2	N	C5	H8	296.5	295.5
C2	N	C5	H9	176.5	174.9
C4	N1	C3	C2	297.6	304.8
N1	C3	C2	H4	240.4	119.7
N1	C3	C2	H5	119.6	240.2
H2	C2	C3	H3	119.5	120.4
N1	C3	C2	H2	295.1	289.7
N1	C3	C2	H3	175.6	169.3
C3	N1	C4	C5	64.5	55.2
C3	N1	C4	H6	184.1	175.0
C3	N1	C4	H7	304.9	295.5
H4	C3	N1	H5	120.8	239.5
C4	N1	C3	H4	178.0	64.5
C4	N1	C3	H5	57.2	185.0
N1	C4	C5	N	301.1	310.6
C5	C4	N1	H6	240.4	240.2
C5	C4	N1	H7	119.6	119.7
N1	C4	C5	H8	61.1	70.3
N1	C4	C5	H9	181.1	190.8
H6	C4	N1	H7	239.2	239.5
C5	C4	N1	C3	64.5	55.2
N1	C4	C5	H6	119.6	119.8
N1	C4	C5	H7	240.4	240.3
N	C5	C4	H8	240.0	240.3
N	C5	C4	H9	120.0	119.8
H6	C4	C5	H7	120.8	120.5
H8	C5	C4	H9	240.0	239.5
N	C5	C4	H6	181.5	190.8
N	C5	C4	H7	60.7	70.3
C4	C5	N	H8	120.0	119.7
C4	C5	N	H9	240.0	240.2
H8	C5	N	H9	120.0	120.5
S	N1	C3	H4	30.8	244.8
S	N1	C3	H5	270.1	5.3
S	N1	C4	H6	332.0	354.7
S	N1	C4	H7	92.8	115.2
C6	S	O1	O2	235.0	237.1
C7	C6	S	O1	127.3	1.4
C11	C6	S	O1	304.2	181.2
C6	S	O2	O1	125.0	122.9
C7	C6	S	O2	355.7	228.5
C11	C6	S	O2	172.6	48.3
C11	C6	C7	S	183.1	180.2
C8	C7	C6	S	179.1	180.0
C9	C8	C7	H10	179.0	180.0
C10	C9	C8	H11	179.9	179.8
C11	C10	C9	H13	180.0	180.2
C10	C11	C6	S	180.8	180.0
C9	C10	C11	H13	180.0	179.8
C11	C10	C9	H12	180.0	180.0
C7	C6	C11	S	176.9	179.8
C12	C11	C6	S	2.6	360.0
C12	C11	C10	C9	179.5	180.0
C12	C11	C10	H13	359.5	0.2
H6	C4	N1	C3	184.1	175.0
N1	C4	H6	C5	242.5	240.8
N1	C4	H6	H7	121.2	120.5
H6	C4	C5	N	181.5	190.8
C5	C4	H6	H7	238.8	239.6
H6	C4	C5	H8	301.5	310.5
H6	C4	C5	H9	61.5	71.0
H7	C4	N1	C3	304.9	295.5
N1	C4	H7	C5	117.5	119.1
N1	C4	H7	H6	238.8	239.5
H7	C4	C5	N	60.7	70.3
C5	C4	H7	H6	121.3	120.4
H7	C4	C5	H8	180.7	190.1
H7	C4	C5	H9	300.7	310.6
H8	C5	N	C1	117.5	115.5
C4	C5	H8	N	239.9	240.9
H8	C5	C4	H6	301.5	310.5
H8	C5	C4	H7	180.7	190.1
C4	C5	H8	H9	119.9	120.4
N	C5	H8	H9	240.1	239.5
H9	C5	N	C1	357.5	355.0
C4	C5	H9	N	120.1	119.2
H9	C5	C4	H6	61.5	71.0
H9	C5	C4	H7	300.7	310.6
C4	C5	H9	H8	240.1	239.6
N	C5	H9	H8	120.0	120.4
H10	C7	C6	S	359.2	0.0
H11	C8	C7	H10	359.0	0.0
C11	C10	H13	C9	180.0	179.8
H13	C10	C9	H12	0.0	359.7
C1	C	H	H14	120.0	120.0
C1	C	H	H1	240.0	240.0
H14	C	H	H1	120.0	120.0
C1	C	H14	H	240.0	240.0
C1	C	H14	H1	120.0	119.9
H	C	H14	H1	240.0	239.9
C1	C	H1	H	120.0	120.0
C1	C	H1	H14	240.0	240.1
H	C	H1	H14	120.0	120.0
C3	C2	H2	H3	240.7	239.5
C3	C2	H3	H2	119.3	120.4
N1	C3	H4	C2	117.8	240.8
H4	C3	C2	H2	54.7	169.9
H4	C3	C2	H3	295.2	49.5
N1	C3	H4	H5	238.9	120.4
N1	C3	H5	C2	242.2	119.2
H5	C3	C2	H2	175.5	49.4
H5	C3	C2	H3	55.9	289.0
N1	C3	H5	H4	121.1	239.6
H12	C9	C8	H11	359.9	0.0
H12	C9	C10	H13	0.0	359.7