PDB Chemical Component T4A

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for T4A

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.372	1.383
C1	C6	1.377	1.381
C1	C7	1.525	1.508
C2	C3	1.417	1.382
C2	H21	1.103	1.080
C3	C4	1.364	1.388
C3	I3	2.083	2.094
C4	C5	1.371	1.388
C4	O4	1.402	1.358
C5	C6	1.421	1.382
C5	I5	2.092	2.094
C6	H61	1.103	1.079
C7	C8	1.518	1.507
C7	H71	1.115	1.090
C7	H72	1.115	1.089
C8	O8	1.264	1.208
C8	O9	1.263	1.342
C1'	C6'	1.394	1.387
C1'	C2'	1.412	1.386
C1'	O4	1.385	1.359
C6'	C5'	1.421	1.382
C6'	H6'1	1.103	1.080
C5'	C4'	1.373	1.387
C5'	I5'	2.074	2.095
C4'	C3'	1.355	1.388
C4'	O4'	1.364	1.360
C3'	C2'	1.417	1.382
C3'	I3'	2.100	2.095
C2'	H2'1	1.103	1.080
O9	HO91	0.950	0.967
O4'	H4'O	0.950	0.966

Bond Angles for T4A

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C6	120.5	120.2
C2	C1	C7	119.6	119.9
C1	C2	C3	118.9	120.1
C1	C2	H21	118.9	120.0
C6	C1	C7	119.9	119.9
C1	C6	C5	118.9	120.1
C1	C6	H61	119.1	120.0
C1	C7	C8	116.0	109.5
C1	C7	H71	109.9	109.5
C1	C7	H72	109.9	109.5
C3	C2	H21	122.1	119.9
C2	C3	C4	121.9	119.9
C2	C3	I3	117.6	120.0
C4	C3	I3	120.5	120.0
C3	C4	C5	118.2	119.9
C3	C4	O4	120.7	120.1
C5	C4	O4	121.1	120.1
C4	C5	C6	121.5	119.9
C4	C5	I5	120.7	120.0
C4	O4	C1'	125.9	106.8
C6	C5	I5	117.7	120.1
C5	C6	H61	122.1	120.0
C8	C7	H71	109.8	109.5
C8	C7	H72	109.8	109.5
C7	C8	O8	119.4	120.0
C7	C8	O9	119.3	120.0
H71	C7	H72	100.3	109.4
O8	C8	O9	121.3	120.0
C8	O9	HO91	119.3	120.0
C6'	C1'	C2'	120.9	120.0
C6'	C1'	O4	121.5	120.0
C1'	C6'	C5'	116.8	120.0
C1'	C6'	H6'1	120.7	120.0
C2'	C1'	O4	117.6	120.0
C1'	C2'	C3'	118.3	120.0
C1'	C2'	H2'1	120.7	120.0
C5'	C6'	H6'1	122.5	120.0
C6'	C5'	C4'	123.8	120.0
C6'	C5'	I5'	118.3	120.0
C4'	C5'	I5'	118.0	120.0
C5'	C4'	C3'	118.0	120.0
C5'	C4'	O4'	121.4	120.0
C3'	C4'	O4'	120.6	120.0
C4'	C3'	C2'	122.4	120.0
C4'	C3'	I3'	118.1	120.0
C4'	O4'	H4'O	121.4	106.8
C2'	C3'	I3'	119.5	120.1
C3'	C2'	H2'1	121.0	119.9

Torsion Angles for T4A

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C6	C1	C2	C7	177.9	180.3
C2	C1	C6	C5	359.6	359.5
C2	C1	C6	H61	179.6	180.0
C2	C1	C7	C8	123.9	90.0
C2	C1	C7	H71	358.6	330.0
C2	C1	C7	H72	249.2	210.1
C3	C2	C1	H21	180.0	180.0
C1	C2	C3	C4	359.9	360.0
C1	C2	C3	I3	179.9	180.0
C2	C1	C6	C7	182.1	179.7
C6	C1	C2	C3	0.6	0.3
C6	C1	C2	H21	180.5	180.2
C6	C1	C7	C8	306.0	269.7
C6	C1	C7	H71	180.7	149.7
C6	C1	C7	H72	71.2	29.8
C4	C5	C6	C1	359.9	0.5
C1	C6	C5	I5	180.1	180.3
C5	C6	C1	H61	180.0	179.5
C2	C1	C7	C6	177.9	180.3
C7	C1	C2	C3	182.7	180.0
C7	C1	C2	H21	2.6	359.9
C7	C1	C6	C5	177.5	179.8
C7	C1	C6	H61	357.5	0.3
C8	C7	C1	H71	125.3	120.0
C8	C7	C1	H72	234.7	239.9
C1	C7	C8	O8	346.5	359.9
C1	C7	C8	O9	166.5	180.0
H71	C7	C1	H72	109.5	119.9
C3	C2	C1	C6	0.6	0.3
C3	C2	C1	C7	182.7	180.0
C1	C2	C3	H21	180.0	180.0
C4	C3	C2	I3	180.0	180.0
C2	C3	C4	C5	359.6	360.0
C2	C3	C4	O4	178.9	180.0
H21	C2	C1	C6	180.5	180.2
H21	C2	C1	C7	2.6	359.9
C1	C2	H21	C3	180.0	180.0
H21	C2	C3	C4	179.9	180.0
H21	C2	C3	I3	359.9	0.0
C4	C3	C2	H21	179.9	180.0
C2	C3	C4	I3	180.0	180.0
C5	C4	C3	O4	180.7	180.0
C3	C4	C5	C6	0.6	359.8
C3	C4	C5	I5	180.3	180.0
C3	C4	O4	C1'	86.8	90.0
I3	C3	C2	H21	359.9	0.0
C2	C3	I3	C4	180.0	180.0
I3	C3	C4	C5	179.6	180.0
I3	C3	C4	O4	358.9	360.0
C1	C6	C5	C4	359.9	0.5
C5	C4	C3	I3	179.6	180.0
C3	C4	C5	O4	179.3	180.0
C5	C4	O4	C1'	266.2	270.0
C6	C5	C4	I5	180.2	179.8
C4	C5	C6	H61	179.9	180.0
O4	C4	C3	I3	358.9	360.0
C3	C4	O4	C5	180.7	180.0
O4	C4	C5	C6	181.2	179.8
O4	C4	C5	I5	1.0	0.0
C6'	C1'	O4	C4	345.2	180.0
C2'	C1'	O4	C4	165.3	359.8
C5	C6	C1	C7	177.5	179.8
C1	C6	C5	H61	180.0	180.5
C6	C5	C4	O4	181.2	179.8
C4	C5	C6	I5	179.8	180.2
I5	C5	C4	O4	1.0	0.0
C4	C5	I5	C6	180.2	179.8
I5	C5	C6	H61	0.1	359.8
H61	C6	C1	C7	357.5	0.3
C1	C6	H61	C5	180.0	179.5
H61	C6	C5	I5	0.1	359.8
C1	C7	C8	H71	234.7	240.0
C1	C7	C8	H72	125.3	120.0
H71	C7	C8	H72	250.6	240.0
O8	C8	C7	O9	180.0	179.9
C7	C8	O9	HO91	180.0	180.0
C1	C7	H71	C8	128.7	120.0
C1	C7	H71	H72	244.3	240.0
C8	C7	H71	H72	115.6	120.0
H71	C7	C8	O8	111.8	119.9
H71	C7	C8	O9	291.8	300.0
C1	C7	H72	C8	231.3	240.0
C1	C7	H72	H71	115.7	120.0
C8	C7	H72	H71	244.4	240.0
H72	C7	C8	O8	221.2	239.9
H72	C7	C8	O9	41.2	60.0
O8	C8	C7	H71	111.8	119.9
O8	C8	C7	H72	221.2	239.9
C7	C8	O8	O9	180.0	180.1
O8	C8	O9	HO91	0.0	0.1
O9	C8	C7	H71	291.8	300.0
O9	C8	C7	H72	41.2	60.0
C7	C8	O9	O8	180.0	179.9
C4	O4	C1'	C6'	345.2	180.0
C2'	C1'	C6'	O4	179.9	180.2
C6'	C1'	C2'	C3'	0.2	359.5
C6'	C1'	C2'	H2'1	180.2	180.0
C5'	C6'	C1'	H6'1	180.0	180.0
C1'	C6'	C5'	C4'	360.0	0.1
C1'	C6'	C5'	I5'	179.9	180.0
C4	O4	C1'	C2'	165.3	359.8
C6'	C1'	C2'	O4	180.1	179.8
C2'	C1'	C6'	C5'	359.9	0.2
C2'	C1'	C6'	H6'1	179.9	180.2
C4'	C3'	C2'	C1'	359.9	0.5
C1'	C2'	C3'	I3'	180.0	180.2
C3'	C2'	C1'	H2'1	180.0	179.5
C6'	C1'	O4	C2'	179.9	180.2
O4	C1'	C6'	C5'	180.0	180.0
O4	C1'	C6'	H6'1	360.0	360.0
O4	C1'	C2'	C3'	180.0	179.7
O4	C1'	C2'	H2'1	0.1	0.2
C5'	C6'	C1'	C2'	359.9	0.2
C5'	C6'	C1'	O4	180.0	180.0
C1'	C6'	C5'	H6'1	180.0	180.0
C4'	C5'	C6'	I5'	180.0	180.1
C6'	C5'	C4'	C3'	0.1	359.9
C6'	C5'	C4'	O4'	180.2	180.0
H6'1	C6'	C1'	C2'	179.9	180.2
H6'1	C6'	C1'	O4	360.0	360.0
C1'	C6'	H6'1	C5'	180.0	180.0
H6'1	C6'	C5'	C4'	180.0	180.1
H6'1	C6'	C5'	I5'	359.9	0.0
C4'	C5'	C6'	H6'1	180.0	180.1
C6'	C5'	C4'	I5'	180.0	179.9
C3'	C4'	C5'	O4'	179.9	179.9
C5'	C4'	C3'	C2'	360.0	359.8
C5'	C4'	C3'	I3'	179.9	180.1
C5'	C4'	O4'	H4'O	180.0	89.9
I5'	C5'	C6'	H6'1	359.9	0.0
C6'	C5'	I5'	C4'	180.0	180.1
I5'	C5'	C4'	C3'	180.1	180.0
I5'	C5'	C4'	O4'	0.2	0.1
C1'	C2'	C3'	C4'	359.9	0.5
C3'	C4'	C5'	I5'	180.1	180.0
C5'	C4'	C3'	O4'	180.1	180.1
C3'	C4'	O4'	H4'O	0.1	270.1
C2'	C3'	C4'	I3'	180.1	179.7
C4'	C3'	C2'	H2'1	179.9	180.0
O4'	C4'	C5'	I5'	0.2	0.1
C5'	C4'	O4'	C3'	179.9	179.9
O4'	C4'	C3'	C2'	179.9	179.7
O4'	C4'	C3'	I3'	359.8	360.0
C3'	C2'	C1'	O4	180.0	179.7
C1'	C2'	C3'	H2'1	180.0	180.5
C2'	C3'	C4'	O4'	179.9	179.7
C4'	C3'	C2'	I3'	179.9	180.3
I3'	C3'	C4'	O4'	359.8	360.0
C4'	C3'	I3'	C2'	180.1	179.7
I3'	C3'	C2'	H2'1	360.0	359.8
H2'1	C2'	C1'	O4	0.1	0.2
C1'	C2'	H2'1	C3'	180.0	179.5
H2'1	C2'	C3'	I3'	360.0	359.8