PDB Chemical Component T3V
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for T3V
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C |
F |
1.352 |
1.351 |
| C |
C1 |
1.376 |
1.384 |
| C2 |
C1 |
1.383 |
1.382 |
| C3 |
C2 |
1.377 |
1.382 |
| C4 |
C3 |
1.383 |
1.383 |
| C5 |
C4 |
1.389 |
1.382 |
| C5 |
C |
1.398 |
1.385 |
| S |
C5 |
1.769 |
1.761 |
| S |
O |
1.429 |
1.421 |
| S |
O1 |
1.430 |
1.421 |
| N |
S |
1.640 |
1.656 |
| C6 |
N |
1.471 |
1.469 |
| C7 |
C6 |
1.505 |
1.534 |
| N1 |
C7 |
1.463 |
1.470 |
| N1 |
C8 |
1.461 |
1.470 |
| C8 |
C9 |
1.506 |
1.533 |
| C9 |
N |
1.472 |
1.470 |
| C10 |
N1 |
1.352 |
1.348 |
| C10 |
O2 |
1.223 |
1.213 |
| C11 |
C10 |
1.505 |
1.507 |
| C4 |
H3 |
1.080 |
1.080 |
| C6 |
H5 |
1.100 |
1.090 |
| C6 |
H4 |
1.100 |
1.090 |
| C7 |
H7 |
1.100 |
1.090 |
| C7 |
H6 |
1.100 |
1.090 |
| C8 |
H9 |
1.100 |
1.089 |
| C8 |
H8 |
1.100 |
1.090 |
| C1 |
H |
1.080 |
1.079 |
| C11 |
H14 |
1.100 |
1.090 |
| C11 |
H12 |
1.100 |
1.091 |
| C11 |
H13 |
1.100 |
1.090 |
| C2 |
H1 |
1.080 |
1.080 |
| C3 |
H2 |
1.080 |
1.080 |
| C9 |
H11 |
1.100 |
1.090 |
| C9 |
H10 |
1.100 |
1.090 |
Bond Angles for T3V
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
C |
F |
118.5 |
120.0 |
| C5 |
C |
F |
120.5 |
120.0 |
| C5 |
C |
C1 |
121.0 |
120.0 |
| C |
C1 |
H |
120.5 |
120.0 |
| C2 |
C1 |
H |
120.5 |
120.0 |
| C4 |
C3 |
C2 |
120.2 |
120.0 |
| C3 |
C2 |
H1 |
119.6 |
120.0 |
| C5 |
C4 |
C3 |
119.8 |
120.1 |
| C3 |
C4 |
H3 |
120.1 |
120.0 |
| C4 |
C3 |
H2 |
119.9 |
120.0 |
| C5 |
C4 |
H3 |
120.1 |
120.0 |
| N |
S |
O |
106.0 |
106.4 |
| N |
S |
O1 |
106.9 |
106.4 |
| C6 |
N |
S |
116.9 |
120.6 |
| C9 |
N |
S |
117.8 |
120.6 |
| C7 |
C6 |
N |
108.9 |
108.6 |
| N |
C6 |
H5 |
109.6 |
109.6 |
| N |
C6 |
H4 |
109.6 |
109.6 |
| N1 |
C7 |
C6 |
109.7 |
108.6 |
| C7 |
C6 |
H5 |
109.6 |
109.6 |
| C7 |
C6 |
H4 |
109.6 |
109.8 |
| C7 |
N1 |
C8 |
111.7 |
118.9 |
| N1 |
C7 |
H7 |
109.4 |
109.6 |
| N1 |
C7 |
H6 |
109.4 |
109.6 |
| N1 |
C8 |
C9 |
110.1 |
108.6 |
| N1 |
C8 |
H9 |
109.3 |
109.7 |
| N1 |
C8 |
H8 |
109.3 |
109.6 |
| C8 |
C9 |
N |
108.7 |
108.6 |
| C9 |
C8 |
H9 |
109.3 |
109.6 |
| C9 |
C8 |
H8 |
109.3 |
109.6 |
| C8 |
C9 |
H11 |
109.7 |
109.6 |
| C8 |
C9 |
H10 |
109.6 |
109.7 |
| C11 |
C10 |
O2 |
120.1 |
120.0 |
| H5 |
C6 |
H4 |
109.5 |
109.6 |
| H7 |
C7 |
H6 |
109.5 |
109.7 |
| H9 |
C8 |
H8 |
109.4 |
109.8 |
| H14 |
C11 |
H12 |
109.4 |
109.5 |
| H14 |
C11 |
H13 |
109.5 |
109.6 |
| H12 |
C11 |
H13 |
109.5 |
109.4 |
| H11 |
C9 |
H10 |
109.5 |
109.7 |
Torsion Angles for T3V
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C5 |
C |
F |
C1 |
179.7 |
180.1 |
| F |
C |
C1 |
H |
0.1 |
0.1 |
| C5 |
C |
C1 |
F |
180.3 |
179.9 |
| C2 |
C1 |
C |
H |
180.0 |
180.0 |
| C2 |
C1 |
C |
F |
180.1 |
180.0 |
| C |
C1 |
C2 |
H |
180.0 |
180.0 |
| C4 |
C3 |
C2 |
C1 |
360.0 |
0.1 |
| C3 |
C2 |
C1 |
H |
179.8 |
179.9 |
| C5 |
C4 |
C3 |
C2 |
359.9 |
359.9 |
| C2 |
C3 |
C4 |
H3 |
179.9 |
180.2 |
| C4 |
C3 |
C2 |
H2 |
180.0 |
179.8 |
| C4 |
C3 |
C2 |
H1 |
180.0 |
180.0 |
| C5 |
C4 |
C3 |
H3 |
180.0 |
179.7 |
| C3 |
C4 |
C5 |
H3 |
180.0 |
180.3 |
| C5 |
C4 |
C3 |
H2 |
179.9 |
179.7 |
| C1 |
C |
C5 |
F |
179.7 |
180.1 |
| C5 |
C |
C1 |
H |
180.4 |
180.0 |
| C |
C5 |
C4 |
C3 |
0.3 |
360.0 |
| C |
C5 |
C4 |
H3 |
180.3 |
179.7 |
| S |
C5 |
C4 |
H3 |
359.5 |
359.8 |
| N |
S |
O |
O1 |
239.1 |
237.2 |
| C6 |
N |
S |
O |
311.2 |
336.4 |
| C9 |
N |
S |
O |
173.2 |
156.4 |
| N |
S |
O1 |
O |
120.4 |
122.8 |
| C6 |
N |
S |
O1 |
182.5 |
203.5 |
| C9 |
N |
S |
O1 |
44.5 |
23.6 |
| C7 |
C6 |
N |
S |
160.6 |
124.8 |
| S |
N |
C6 |
H5 |
280.5 |
5.1 |
| S |
N |
C6 |
H4 |
40.7 |
244.7 |
| C8 |
C9 |
N |
S |
198.5 |
235.2 |
| C9 |
N |
C6 |
S |
140.3 |
180.0 |
| N1 |
C7 |
C6 |
N |
57.4 |
49.4 |
| C7 |
C6 |
N |
H5 |
240.1 |
119.7 |
| C7 |
C6 |
N |
H4 |
119.9 |
240.1 |
| C8 |
C9 |
N |
C6 |
58.6 |
55.2 |
| H5 |
C6 |
N |
H4 |
239.8 |
120.4 |
| N |
C6 |
C7 |
H5 |
119.9 |
240.2 |
| N |
C6 |
C7 |
H4 |
240.1 |
119.8 |
| C6 |
C7 |
N1 |
C8 |
301.4 |
304.8 |
| N1 |
C7 |
C6 |
H7 |
240.0 |
119.7 |
| N1 |
C7 |
C6 |
H6 |
120.1 |
240.2 |
| H5 |
C6 |
C7 |
H4 |
120.2 |
239.6 |
| N1 |
C7 |
C6 |
H5 |
297.5 |
169.2 |
| N1 |
C7 |
C6 |
H4 |
177.3 |
289.6 |
| C7 |
N1 |
C8 |
C9 |
58.5 |
55.2 |
| C7 |
N1 |
C8 |
H9 |
178.6 |
175.0 |
| C7 |
N1 |
C8 |
H8 |
298.4 |
295.5 |
| H7 |
C7 |
N1 |
H6 |
119.9 |
239.5 |
| C8 |
N1 |
C7 |
C6 |
301.4 |
304.8 |
| C8 |
N1 |
C7 |
H7 |
181.4 |
64.6 |
| C8 |
N1 |
C7 |
H6 |
61.4 |
185.0 |
| N1 |
C8 |
C9 |
N |
303.1 |
310.6 |
| C9 |
C8 |
N1 |
H9 |
239.9 |
240.2 |
| C9 |
C8 |
N1 |
H8 |
120.1 |
119.7 |
| N1 |
C8 |
C9 |
H11 |
63.0 |
70.4 |
| N1 |
C8 |
C9 |
H10 |
183.2 |
190.9 |
| H9 |
C8 |
N1 |
H8 |
240.2 |
239.5 |
| N1 |
C8 |
C9 |
H9 |
120.1 |
119.8 |
| N1 |
C8 |
C9 |
H8 |
239.9 |
240.3 |
| H9 |
C8 |
C9 |
H8 |
119.8 |
120.5 |
| H11 |
C9 |
C8 |
H10 |
239.8 |
239.5 |
| C6 |
N |
C9 |
S |
220.1 |
180.0 |
| C9 |
N |
C6 |
H5 |
60.9 |
185.0 |
| C9 |
N |
C6 |
H4 |
181.1 |
64.7 |
| N |
C9 |
C8 |
H9 |
183.0 |
190.8 |
| N |
C9 |
C8 |
H8 |
63.2 |
70.3 |
| C8 |
C9 |
N |
H11 |
119.9 |
119.7 |
| C8 |
C9 |
N |
H10 |
240.1 |
240.2 |
| C10 |
N1 |
C7 |
H7 |
0.8 |
244.3 |
| C10 |
N1 |
C7 |
H6 |
240.9 |
4.7 |
| C10 |
N1 |
C8 |
C9 |
239.0 |
235.5 |
| C10 |
N1 |
C8 |
H9 |
359.2 |
355.3 |
| C10 |
N1 |
C8 |
H8 |
118.9 |
115.8 |
| H3 |
C4 |
C3 |
C2 |
179.9 |
180.2 |
| C5 |
C4 |
H3 |
C3 |
180.0 |
180.3 |
| H3 |
C4 |
C3 |
H2 |
359.9 |
0.0 |
| H5 |
C6 |
N |
S |
280.5 |
5.1 |
| C7 |
C6 |
H5 |
N |
119.5 |
240.9 |
| N |
C6 |
H5 |
H4 |
120.3 |
239.6 |
| C7 |
C6 |
H5 |
H4 |
239.7 |
120.5 |
| H4 |
C6 |
N |
S |
40.7 |
244.7 |
| C7 |
C6 |
H4 |
N |
240.6 |
119.2 |
| N |
C6 |
H4 |
H5 |
239.7 |
120.4 |
| C7 |
C6 |
H4 |
H5 |
120.3 |
239.6 |
| H7 |
C7 |
C6 |
N |
177.5 |
289.7 |
| N1 |
C7 |
H7 |
C6 |
120.2 |
240.9 |
| H7 |
C7 |
C6 |
H5 |
57.6 |
49.5 |
| H7 |
C7 |
C6 |
H4 |
297.4 |
169.9 |
| H7 |
C7 |
N1 |
C8 |
181.4 |
64.6 |
| N1 |
C7 |
H7 |
H6 |
240.1 |
120.4 |
| H6 |
C7 |
C6 |
N |
297.4 |
169.2 |
| N1 |
C7 |
H6 |
C6 |
239.8 |
119.1 |
| H6 |
C7 |
C6 |
H5 |
177.5 |
288.9 |
| H6 |
C7 |
C6 |
H4 |
57.3 |
49.3 |
| H6 |
C7 |
N1 |
C8 |
61.4 |
185.0 |
| N1 |
C7 |
H6 |
H7 |
119.9 |
239.6 |
| N1 |
C8 |
H9 |
C9 |
239.4 |
240.8 |
| N1 |
C8 |
H9 |
H8 |
119.7 |
120.4 |
| H9 |
C8 |
C9 |
N |
183.0 |
190.8 |
| C9 |
C8 |
H9 |
H8 |
240.3 |
239.6 |
| H9 |
C8 |
C9 |
H11 |
302.9 |
310.5 |
| H9 |
C8 |
C9 |
H10 |
63.1 |
71.1 |
| N1 |
C8 |
H8 |
C9 |
120.6 |
119.1 |
| N1 |
C8 |
H8 |
H9 |
240.3 |
239.5 |
| H8 |
C8 |
C9 |
N |
63.2 |
70.3 |
| C9 |
C8 |
H8 |
H9 |
119.7 |
120.5 |
| H8 |
C8 |
C9 |
H11 |
183.1 |
190.0 |
| H8 |
C8 |
C9 |
H10 |
303.3 |
310.6 |
| H |
C1 |
C |
F |
0.1 |
0.1 |
| H14 |
C11 |
C10 |
O2 |
0.0 |
184.9 |
| H12 |
C11 |
H14 |
H13 |
120.0 |
119.9 |
| H12 |
C11 |
C10 |
O2 |
120.0 |
304.9 |
| H14 |
C11 |
H12 |
H13 |
240.0 |
240.0 |
| H13 |
C11 |
C10 |
O2 |
240.0 |
64.8 |
| H14 |
C11 |
H13 |
H12 |
120.0 |
120.0 |
| H1 |
C2 |
C1 |
H |
359.8 |
360.0 |
| C4 |
C3 |
H2 |
C2 |
180.0 |
180.2 |
| H2 |
C3 |
C2 |
H1 |
0.0 |
0.2 |
| H2 |
C3 |
C4 |
H3 |
359.9 |
0.0 |
| H11 |
C9 |
N |
S |
78.6 |
115.4 |
| C8 |
C9 |
H11 |
N |
240.7 |
240.9 |
| H11 |
C9 |
C8 |
H9 |
302.9 |
310.5 |
| H11 |
C9 |
C8 |
H8 |
183.1 |
190.0 |
| C8 |
C9 |
H11 |
H10 |
120.3 |
120.5 |
| H10 |
C9 |
N |
S |
318.4 |
355.0 |
| C8 |
C9 |
H10 |
N |
119.3 |
119.2 |
| H10 |
C9 |
C8 |
H9 |
63.1 |
71.1 |
| H10 |
C9 |
C8 |
H8 |
303.3 |
310.6 |
| C8 |
C9 |
H10 |
H11 |
239.7 |
239.5 |