PDB Chemical Component T3S

Ideal Model

Chemical Description

Name 5'-deoxy-5'-piperidin-1-ylthymidine
Formula C15 H23 N3 O4
Formal charge 0
Molecular weight 309.361 g/mol
Component type NON-POLYMER

Chemical features

Atom count 45
Chiral atom count 3
Chiral atoms C4' C3' C1'
Bond count 47
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5'-deoxy-5'-piperidin-1-ylthymidine
Systematic name (OpenEye OEToolkits) 1-[(2R,4S,5R)-4-hydroxy-5-(piperidin-1-ylmethyl)oxolan-2-yl]-5-methyl-pyrimidine-2,4-dione

Chemical Descriptors

Stereo SMILES (CACTVS) CC1=CN([C@H]2C[C@H](O)[C@@H](CN3CCCCC3)O2)C(=O)NC1=O
SMILES (CACTVS) CC1=CN([CH]2C[CH](O)[CH](CN3CCCCC3)O2)C(=O)NC1=O
Stereo SMILES (OpenEye) CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CN3CCCCC3)O
InChI descriptor InChI=1S/C15H23N3O4/c1-10-8-18(15(21)16-14(10)20)13-7-11(19)12(22-13)9-17-5-3-2-4-6-17/h8,11-13,19H,2-7,9H2,1H3,(H,16,20,21)/t11-,12+,13+/m0/s1
InChIKey descriptor GMOUOGHZJCSNOZ-YNEHKIRRSA-N

Status Information

Last modified 2011-06-04
Created 2008-05-28
Release status REL
Model PDB code 3D8Y
Processing site PDBJ