PDB Chemical Component T3S

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for T3S

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C21 C22 1.538 1.530
C21 N26 1.479 1.468
C22 C23 1.543 1.530
C23 C24 1.540 1.531
C24 C25 1.544 1.531
C25 N26 1.487 1.468
N26 C5' 1.495 1.469
C5' C4' 1.570 1.530
C4' O4' 1.466 1.444
C4' C3' 1.523 1.550
O4' C1' 1.469 1.437
C3' O3' 1.436 1.429
C3' C2' 1.531 1.548
C2' C1' 1.524 1.542
C1' N1 1.485 1.465
N1 C6 1.409 1.368
N1 C2 1.411 1.346
C6 C5 1.395 1.350
C5 C5M 1.535 1.507
C5 C4 1.400 1.416
C4 O4 1.233 1.218
C4 N3 1.403 1.348
N3 C2 1.403 1.346
C2 O2 1.233 1.216
C21 H21 1.100 1.090
C21 H21A 1.100 1.090
C22 H22 1.100 1.090
C22 H22A 1.100 1.090
C23 H23 1.100 1.091
C23 H23A 1.099 1.090
C24 H24 1.100 1.090
C24 H24A 1.100 1.090
C25 H25 1.099 1.090
C25 H25A 1.101 1.090
C5' H5' 1.100 1.090
C5' H5'A 1.100 1.090
C4' H4' 1.100 1.090
C3' H3' 1.100 1.089
O3' HO3' 0.950 0.967
C2' H2' 1.100 1.090
C2' H2'A 1.100 1.090
C1' H1' 1.100 1.090
C6 H6 1.080 1.080
C5M H5M 1.100 1.090
C5M H5MA 1.100 1.090
C5M H5MB 1.100 1.090
N3 HN3 1.000 0.970

Bond Angles for T3S

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C22 C21 N26 110.2 109.5
C21 C22 C23 112.4 109.3
C22 C21 H21 109.2 109.5
C22 C21 H21A 109.1 109.5
C21 C22 H22 108.5 109.5
C21 C22 H22A 107.8 109.4
C21 N26 C25 111.9 111.2
C21 N26 C5' 110.7 111.0
N26 C21 H21 109.2 109.5
N26 C21 H21A 109.1 109.4
C22 C23 C24 113.2 109.2
C23 C22 H22 108.5 109.5
C23 C22 H22A 107.8 109.5
C22 C23 H23 108.2 109.6
C22 C23 H23A 107.4 109.5
C23 C24 C25 112.9 109.3
C24 C23 H23 108.2 109.5
C24 C23 H23A 107.4 109.5
C23 C24 H24 108.4 109.6
C23 C24 H24A 107.6 109.5
C24 C25 N26 112.3 109.5
C25 C24 H24 108.3 109.5
C25 C24 H24A 107.6 109.4
C24 C25 H25 108.6 109.4
C24 C25 H25A 107.9 109.4
C25 N26 C5' 115.3 111.0
N26 C25 H25 108.6 109.5
N26 C25 H25A 107.9 109.5
N26 C5' C4' 116.6 109.5
N26 C5' H5' 107.2 109.5
N26 C5' H5'A 105.5 109.5
C5' C4' O4' 116.4 110.6
C5' C4' C3' 106.6 110.6
C4' C5' H5' 107.1 109.5
C4' C5' H5'A 105.5 109.4
C5' C4' H4' 105.3 110.6
O4' C4' C3' 104.4 103.5
C4' O4' C1' 109.4 107.0
O4' C4' H4' 107.5 110.6
C4' C3' O3' 108.9 110.9
C4' C3' C2' 103.1 102.1
C3' C4' H4' 117.1 110.8
C4' C3' H3' 113.7 110.9
O4' C1' C2' 105.4 107.3
O4' C1' N1 107.6 109.9
O4' C1' H1' 114.8 109.9
O3' C3' C2' 109.2 110.9
O3' C3' H3' 108.2 110.8
C3' O3' HO3' 109.5 114.0
C3' C2' C1' 100.5 104.2
C2' C3' H3' 113.6 110.9
C3' C2' H2' 112.6 110.5
C3' C2' H2'A 114.4 110.5
C2' C1' N1 113.8 109.9
C1' C2' H2' 112.6 110.4
C1' C2' H2'A 114.4 110.5
C2' C1' H1' 108.8 109.9
C1' N1 C6 119.5 119.7
C1' N1 C2 120.3 119.7
N1 C1' H1' 106.6 110.0
C6 N1 C2 120.2 120.6
N1 C6 C5 120.7 119.7
N1 C6 H6 119.7 120.1
N1 C2 N3 118.7 120.9
N1 C2 O2 121.6 119.6
C6 C5 C5M 119.2 120.4
C6 C5 C4 119.3 119.1
C5 C6 H6 119.6 120.2
C5M C5 C4 121.5 120.5
C5 C5M H5M 109.5 109.5
C5 C5M H5MA 109.4 109.5
C5 C5M H5MB 109.5 109.5
C5 C4 O4 121.1 120.3
C5 C4 N3 120.3 119.4
O4 C4 N3 118.5 120.3
C4 N3 C2 120.8 120.3
C4 N3 HN3 119.6 119.8
N3 C2 O2 119.7 119.5
C2 N3 HN3 119.6 119.9
H21 C21 H21A 110.0 109.4
H22 C22 H22A 111.8 109.5
H23 C23 H23A 112.4 109.5
H24 C24 H24A 112.2 109.5
H25 C25 H25A 111.7 109.5
H5' C5' H5'A 115.2 109.5
H2' C2' H2'A 102.8 110.6
H5M C5M H5MA 109.5 109.4
H5M C5M H5MB 109.4 109.4
H5MA C5M H5MB 109.5 109.5

Torsion Angles for T3S

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C22 C21 N26 C25 291.3 298.3
C22 C21 N26 C5' 161.1 174.2
N26 C21 C22 H21 240.0 239.9
N26 C21 C22 H21A 119.7 120.0
C21 C22 C23 C24 27.6 302.4
C23 C22 C21 H22 240.0 240.0
C23 C22 C21 H22A 118.7 119.9
C21 C22 C23 H23 147.6 62.2
C21 C22 C23 H23A 269.2 182.4
H21 C21 C22 H21A 239.7 240.1
H22 C22 C21 H22A 238.7 239.9
N26 C21 C22 C23 30.0 59.1
C22 C21 N26 H21 120.0 120.1
C22 C21 N26 H21A 240.3 240.0
N26 C21 C22 H22 150.0 179.1
N26 C21 C22 H22A 271.3 299.2
C24 C25 N26 C21 43.0 61.7
C25 N26 C21 C5' 130.2 124.1
C21 N26 C25 H25 283.0 301.7
C21 N26 C25 H25A 161.8 181.7
C21 N26 C5' C4' 96.9 190.0
C21 N26 C5' H5' 216.9 310.0
C21 N26 C5' H5'A 340.1 70.1
H21 C21 N26 H21A 120.3 119.9
C23 C22 C21 N26 30.0 59.1
C23 C22 C21 H21 150.0 179.2
C23 C22 C21 H21A 270.3 299.2
C21 C22 C23 H22 120.0 120.0
C21 C22 C23 H22A 241.3 240.1
C22 C23 C24 C25 307.8 57.6
C24 C23 C22 H23 240.0 240.1
C24 C23 C22 H23A 118.4 119.9
C22 C23 C24 H24 67.8 177.6
C22 C23 C24 H24A 189.2 297.8
H22 C22 C23 H22A 121.3 120.1
H23 C23 C22 H23A 238.4 239.8
C24 C23 C22 H22 267.5 182.4
C24 C23 C22 H22A 146.3 62.3
C22 C23 C24 H23 120.0 119.9
C22 C23 C24 H23A 241.6 240.1
C23 C24 C25 N26 16.4 300.9
C25 C24 C23 H24 240.0 240.0
C25 C24 C23 H24A 118.5 119.9
C23 C24 C25 H25 136.4 60.9
C23 C24 C25 H25A 257.6 180.8
H23 C23 C24 H23A 121.6 120.1
H24 C24 C23 H24A 238.5 239.8
C21 N26 C25 C24 43.0 61.7
C25 C24 C23 H23 187.7 297.7
C25 C24 C23 H23A 66.1 177.6
C23 C24 C25 H24 120.0 120.0
C23 C24 C25 H24A 241.5 240.1
C24 C25 N26 C5' 170.8 185.8
N26 C25 C24 H25 240.0 240.0
N26 C25 C24 H25A 118.8 120.1
H24 C24 C25 H24A 121.5 120.1
H25 C25 C24 H25A 238.8 240.1
C21 N26 C25 C5' 232.2 235.9
C25 N26 C21 H21 171.3 178.2
C25 N26 C21 H21A 51.0 58.3
N26 C25 C24 H24 256.3 180.9
N26 C25 C24 H24A 134.9 60.8
C24 C25 N26 H25 120.0 120.0
C24 C25 N26 H25A 241.2 240.0
C25 N26 C5' C4' 328.5 65.7
C25 N26 C5' H5' 88.5 185.8
C25 N26 C5' H5'A 211.8 305.8
H25 C25 N26 H25A 121.2 120.0
C21 N26 C5' C25 128.4 124.3
C5' N26 C21 H21 41.1 54.1
C5' N26 C21 H21A 280.8 294.2
C5' N26 C25 H25 50.8 65.9
C5' N26 C25 H25A 289.6 305.9
N26 C5' C4' O4' 64.8 66.5
N26 C5' C4' C3' 180.8 180.5
C4' C5' N26 H5' 240.0 240.0
C4' C5' N26 H5'A 116.7 119.9
N26 C5' C4' H4' 305.9 303.6
H5' C5' N26 H5'A 236.7 240.0
N26 C5' C4' H5' 120.0 120.0
N26 C5' C4' H5'A 243.3 240.0
O4' C4' C5' C3' 244.0 245.9
C5' C4' O4' C1' 106.5 158.6
O4' C4' C5' H4' 118.9 122.8
C5' C4' C3' O3' 152.9 86.3
C5' C4' C3' C2' 268.8 204.5
C3' C4' C5' H4' 234.9 236.9
C5' C4' C3' H3' 32.2 322.7
H5' C5' C4' H5'A 123.3 120.0
C5' C4' O4' C3' 117.2 118.5
O4' C4' C5' H5' 304.8 306.4
O4' C4' C5' H5'A 181.5 186.4
C5' C4' O4' H4' 242.2 237.2
O4' C4' C3' O3' 276.7 204.8
O4' C4' C3' C2' 32.5 323.0
C3' C4' O4' H4' 125.1 118.6
O4' C4' C3' H3' 155.9 81.2
C4' O4' C1' C2' 344.5 333.5
C4' O4' C1' N1 222.7 214.1
C4' O4' C1' H1' 104.2 92.9
C5' C4' C3' O4' 236.3 241.5
C3' C4' C5' H5' 60.8 60.5
C3' C4' C5' H5'A 297.5 300.5
C5' C4' C3' H4' 117.5 123.0
C3' C4' O4' C1' 349.3 40.1
O4' C4' C3' H4' 241.3 241.5
O3' C3' C4' C2' 244.2 241.8
O3' C3' C4' H3' 120.7 123.6
C4' C3' O3' HO3' 223.3 180.0
C4' C3' C2' C1' 319.1 20.9
C2' C3' C4' H3' 236.6 241.8
C4' C3' C2' H2' 79.1 139.5
C4' C3' C2' H2'A 196.0 262.2
C1' O4' C4' C3' 349.3 40.1
C1' O4' C4' H4' 224.2 281.4
C3' C2' C1' O4' 34.7 2.0
C2' C1' O4' N1 121.8 119.4
O4' C1' C2' H2' 274.7 243.3
O4' C1' C2' H2'A 157.8 120.7
C2' C1' O4' H1' 240.3 240.6
O4' C1' N1 C6 38.3 233.5
O4' C1' N1 C2 219.1 53.2
N1 C1' O4' H1' 118.5 121.2
C4' C3' O3' C2' 111.9 112.7
O3' C3' C4' H4' 35.4 323.3
C4' C3' O3' H3' 235.9 236.4
O3' C3' C2' C1' 74.7 139.1
C2' C3' O3' H3' 124.0 123.7
O3' C3' C2' H2' 194.8 257.7
O3' C3' C2' H2'A 311.6 20.4
C4' C3' C2' O3' 244.3 241.8
C2' C3' C4' H4' 151.2 81.5
C4' C3' C2' H3' 123.5 118.2
O4' C1' C2' C3' 34.7 2.0
O3' C3' C2' H3' 239.2 236.4
C2' C3' O3' HO3' 111.4 67.3
C3' C2' C1' N1 152.5 121.4
C1' C2' C3' H2' 240.0 241.4
C1' C2' C3' H2'A 123.1 118.7
C3' C2' C1' H1' 271.1 242.6
H2' C2' C3' H2'A 243.1 237.3
O4' C1' C2' N1 242.3 240.6
O4' C1' C2' H1' 123.6 119.5
C1' C2' C3' H3' 195.5 262.7
C3' C2' C1' H2' 120.0 118.7
C3' C2' C1' H2'A 236.9 241.3
C2' C1' N1 C6 281.9 115.7
C2' C1' N1 C2 102.7 295.4
N1 C1' C2' H1' 241.3 238.9
H2' C2' C1' H2'A 116.9 122.6
O4' C1' N1 C2' 116.4 117.8
O4' C1' N1 H1' 236.3 238.9
N1 C1' C2' H2' 32.4 2.8
N1 C1' C2' H2'A 275.5 240.1
C2' C1' N1 H1' 119.9 121.1
C6 N1 C1' C2 179.1 180.3
C1' N1 C6 C5 180.6 179.9
C1' N1 C6 H6 0.6 360.0
C1' N1 C2 N3 179.4 179.8
C1' N1 C2 O2 358.5 0.0
C1' N1 C6 C2 180.9 179.7
C6 N1 C1' H1' 162.0 354.6
C6 N1 C2 N3 0.2 359.6
C6 N1 C2 O2 179.4 179.8
N1 C6 C5 C5M 179.9 180.1
N1 C6 C5 C4 0.1 360.0
C5 C6 N1 H6 180.0 180.0
C1' N1 C2 C6 179.1 180.3
C2 N1 C1' H1' 342.8 174.4
C2 N1 C6 C5 359.7 0.2
C2 N1 C6 H6 179.7 180.2
C4 N3 C2 N1 360.0 0.5
N3 C2 N1 O2 180.9 179.8
N1 C2 N3 HN3 180.0 180.3
C5 C6 N1 C2 359.7 0.2
N1 C6 C5 H6 180.0 180.0
C5M C5 C6 C4 179.8 180.1
C6 C5 C5M H5M 236.5 90.0
C6 C5 C5M H5MA 356.5 210.0
C6 C5 C5M H5MB 116.6 330.0
C6 C5 C4 O4 180.2 180.0
C6 C5 C4 N3 0.0 0.0
C6 C5 C5M C4 180.2 179.9
C5M C5 C6 H6 359.9 0.0
C5M C5 C4 O4 0.4 359.9
C5M C5 C4 N3 180.3 180.0
H5M C5M C5 H5MA 240.0 240.0
H5M C5M C5 H5MB 120.0 120.0
H5MA C5M C5 H5MB 240.0 240.0
C6 C5 C4 C5M 179.8 180.1
C4 C5 C6 H6 180.1 180.0
C4 C5 C5M H5M 56.3 270.1
C4 C5 C5M H5MA 176.3 30.1
C4 C5 C5M H5MB 296.3 150.1
O4 C4 C5 N3 180.2 180.0
C5 C4 N3 C2 359.9 359.7
C5 C4 N3 HN3 179.9 179.9
C5 C4 O4 N3 179.8 180.0
O4 C4 N3 C2 179.7 179.8
O4 C4 N3 HN3 359.7 360.0
N1 C2 N3 C4 360.0 0.5
C5 C4 N3 O4 180.2 180.0
C4 N3 C2 O2 180.8 180.2
C2 N3 C4 HN3 180.0 179.8
N1 C2 N3 O2 179.1 180.2
C4 N3 C2 HN3 180.0 180.2
N1 C2 O2 N3 180.9 179.8
O2 C2 N3 HN3 0.8 0.0
C22 C21 H21 N26 239.4 239.9
H21 C21 C22 C23 150.0 179.2
C22 C21 H21 H21A 119.7 120.0
H21 C21 C22 H22 270.0 299.2
H21 C21 C22 H22A 31.3 59.3
H21 C21 N26 C25 171.3 178.2
H21 C21 N26 C5' 41.1 54.1
N26 C21 H21 H21A 240.3 240.1
C22 C21 H21A N26 120.4 120.0
H21A C21 C22 C23 270.3 299.2
C22 C21 H21A H21 240.2 240.0
H21A C21 C22 H22 30.3 59.2
H21A C21 C22 H22A 151.6 179.2
H21A C21 N26 C25 51.0 58.3
H21A C21 N26 C5' 280.8 294.2
N26 C21 H21A H21 119.8 120.0
H22 C22 C21 N26 150.0 179.1
C21 C22 H22 C23 237.6 240.1
H22 C22 C21 H21 270.0 299.2
H22 C22 C21 H21A 30.3 59.2
C21 C22 H22 H22A 118.8 120.0
H22 C22 C23 C24 267.5 182.4
C23 C22 H22 H22A 241.2 239.9
H22 C22 C23 H23 27.6 302.3
H22 C22 C23 H23A 149.2 62.5
H22A C22 C21 N26 271.3 299.2
C21 C22 H22A C23 121.6 119.8
H22A C22 C21 H21 31.3 59.3
H22A C22 C21 H21A 151.6 179.2
C21 C22 H22A H22 240.8 240.0
H22A C22 C23 C24 146.3 62.3
C23 C22 H22A H22 119.2 120.1
H22A C22 C23 H23 266.3 182.1
H22A C22 C23 H23A 27.9 302.3
C22 C23 H23 C24 236.9 240.3
H23 C23 C22 H22 27.6 302.3
H23 C23 C22 H22A 266.3 182.1
C22 C23 H23 H23A 118.5 120.2
H23 C23 C24 C25 187.7 297.7
C24 C23 H23 H23A 241.6 239.9
H23 C23 C24 H24 307.8 57.7
H23 C23 C24 H24A 69.2 177.8
C22 C23 H23A C24 122.1 119.7
H23A C23 C22 H22 149.2 62.5
H23A C23 C22 H22A 27.9 302.3
C22 C23 H23A H23 241.1 239.8
H23A C23 C24 C25 66.1 177.6
C24 C23 H23A H23 119.0 120.1
H23A C23 C24 H24 186.1 297.5
H23A C23 C24 H24A 307.6 57.7
C23 C24 H24 C25 237.2 240.2
H24 C24 C23 H23 307.8 57.7
H24 C24 C23 H23A 186.1 297.5
C23 C24 H24 H24A 118.6 120.2
H24 C24 C25 N26 256.3 180.9
C25 C24 H24 H24A 241.4 240.0
H24 C24 C25 H25 16.4 300.9
H24 C24 C25 H25A 137.5 60.8
C23 C24 H24A C25 121.9 119.8
H24A C24 C23 H23 69.2 177.8
H24A C24 C23 H23A 307.6 57.7
C23 C24 H24A H24 240.9 239.8
H24A C24 C25 N26 134.9 60.8
C25 C24 H24A H24 119.1 120.0
H24A C24 C25 H25 254.9 180.8
H24A C24 C25 H25A 16.1 300.7
C24 C25 H25 N26 237.7 240.0
H25 C25 C24 H24 16.4 300.9
H25 C25 C24 H24A 254.9 180.8
C24 C25 H25 H25A 118.9 119.9
H25 C25 N26 C5' 50.8 65.9
N26 C25 H25 H25A 241.1 240.0
C24 C25 H25A N26 121.5 120.1
H25A C25 C24 H24 137.5 60.8
H25A C25 C24 H24A 16.1 300.7
C24 C25 H25A H25 240.8 240.1
H25A C25 N26 C5' 289.6 305.9
N26 C25 H25A H25 119.2 120.0
N26 C5' H5' C4' 234.1 240.0
N26 C5' H5' H5'A 117.1 120.0
H5' C5' C4' O4' 304.8 306.4
H5' C5' C4' C3' 60.8 60.5
C4' C5' H5' H5'A 242.9 240.1
H5' C5' C4' H4' 185.9 183.6
N26 C5' H5'A C4' 124.0 120.0
N26 C5' H5'A H5' 242.0 240.0
H5'A C5' C4' O4' 181.5 186.4
H5'A C5' C4' C3' 297.5 300.5
C4' C5' H5'A H5' 118.0 120.0
H5'A C5' C4' H4' 62.6 63.6
C5' C4' H4' O4' 124.7 122.8
C5' C4' H4' C3' 241.8 237.0
H4' C4' C5' H5' 185.9 183.6
H4' C4' C5' H5'A 62.6 63.6
O4' C4' H4' C3' 117.1 114.1
H4' C4' O4' C1' 224.2 281.4
H4' C4' C3' O3' 35.4 323.3
H4' C4' C3' C2' 151.2 81.5
H4' C4' C3' H3' 274.6 199.7
C4' C3' H3' O3' 121.1 123.6
C4' C3' H3' C2' 242.5 247.3
H3' C3' C4' H4' 274.6 199.7
O3' C3' H3' C2' 121.3 123.6
H3' C3' O3' HO3' 347.4 303.6
H3' C3' C2' C1' 195.5 262.7
H3' C3' C2' H2' 315.6 21.3
H3' C3' C2' H2'A 72.4 144.0
HO3' O3' C3' C2' 111.4 67.3
HO3' O3' C3' H3' 347.4 303.6
C3' C2' H2' C1' 247.2 245.3
H2' C2' C3' H3' 315.6 21.3
C3' C2' H2' H2'A 123.6 122.7
H2' C2' C1' N1 32.4 2.8
C1' C2' H2' H2'A 236.4 237.4
H2' C2' C1' H1' 151.1 123.9
C3' C2' H2'A C1' 115.2 114.8
H2'A C2' C3' H3' 72.4 144.0
C3' C2' H2'A H2' 237.6 237.3
H2'A C2' C1' N1 275.5 240.1
C1' C2' H2'A H2' 122.4 122.6
H2'A C2' C1' H1' 34.2 1.3
O4' C1' H1' C2' 242.2 242.2
O4' C1' H1' N1 119.1 121.1
C2' C1' H1' N1 236.9 238.9
H1' C1' C2' H2' 151.1 123.9
H1' C1' C2' H2'A 34.2 1.3
H1' C1' N1 C6 162.0 354.6
H1' C1' N1 C2 342.8 174.4
H6 C6 N1 C2 179.7 180.2
N1 C6 H6 C5 180.0 180.0
H6 C6 C5 C5M 359.9 0.0
H6 C6 C5 C4 180.1 180.0
H5M C5M C5 C4 56.3 270.1
C5 C5M H5M H5MA 120.0 120.0
C5 C5M H5M H5MB 240.0 240.0
H5MA C5M H5M H5MB 120.0 120.0
H5MA C5M C5 C4 176.3 30.1
C5 C5M H5MA H5M 240.0 240.0
C5 C5M H5MA H5MB 120.0 120.0
H5M C5M H5MA H5MB 240.0 240.1
H5MB C5M C5 C4 296.3 150.1
C5 C5M H5MB H5M 120.0 120.0
C5 C5M H5MB H5MA 240.0 240.0
H5M C5M H5MB H5MA 120.0 119.9
C4 N3 HN3 C2 180.0 179.8
HN3 N3 C2 O2 0.8 0.0