PDB Chemical Component T3P

Ideal Model

Chemical Description

Name THYMIDINE-3'-PHOSPHATE
Synonyms ALPHA-ANOMERIC THYMIDINE-3'-PHOSPHATE
Formula C10 H15 N2 O8 P
Formal charge 0
Molecular weight 322.208 g/mol
Component type DNA LINKING
Nonstandard Parent Id DT

Chemical features

Atom count 36
Chiral atom count 3
Chiral atoms C4' C3' C1'
Observed leaving atoms OP3
Bond count 37
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 3'-thymidylic acid
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-2-(hydroxymethyl)-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-3-yl] dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CC1=CN([C@H]2C[C@H](O[P](O)(O)=O)[C@@H](CO)O2)C(=O)NC1=O
SMILES (CACTVS) CC1=CN([CH]2C[CH](O[P](O)(O)=O)[CH](CO)O2)C(=O)NC1=O
Stereo SMILES (OpenEye) CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CO)OP(=O)(O)O
InChI descriptor InChI=1S/C10H15N2O8P/c1-5-3-12(10(15)11-9(5)14)8-2-6(7(4-13)19-8)20-21(16,17)18/h3,6-8,13H,2,4H2,1H3,(H,11,14,15)(H2,16,17,18)/t6-,7+,8+/m0/s1
InChIKey descriptor XXYIANZGUOSQHY-XLPZGREQSA-N

Status Information

Last modified 2020-06-17
Created 1999-08-26
Release status REL
Model PDB code 1CY8
Processing site RCSB