PDB Chemical Component T3P

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for T3P

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.503 1.479
P OP2 1.453 1.610
P OP3 1.476 1.610
P O3' 1.636 1.610
OP2 HOP2 0.949 0.967
OP3 HOP3 0.949 0.966
O5' C5' 1.402 1.429
O5' H5' 0.949 0.967
C5' C4' 1.529 1.529
C5' H5'1 1.115 1.090
C5' H5'' 1.116 1.090
C4' O4' 1.459 1.445
C4' C3' 1.510 1.550
C4' H4' 1.115 1.090
O4' C1' 1.439 1.437
C3' O3' 1.446 1.429
C3' C2' 1.501 1.548
C3' H3' 1.114 1.089
C2' C1' 1.528 1.541
C2' H2' 1.115 1.089
C2' H2'' 1.116 1.089
C1' N1 1.512 1.465
C1' H1' 1.116 1.090
N1 C2 1.417 1.344
N1 C6 1.420 1.368
C2 O2 1.227 1.215
C2 N3 1.370 1.346
N3 C4 1.381 1.348
N3 H3 1.020 0.971
C4 O4 1.222 1.218
C4 C5 1.465 1.415
C5 C5M 1.547 1.507
C5 C6 1.372 1.350
C5M H51 1.115 1.090
C5M H52 1.115 1.090
C5M H53 1.115 1.089
C6 H6 1.103 1.080

Bond Angles for T3P

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 123.9 109.4
OP1 P OP3 116.5 109.5
OP1 P O3' 77.6 109.5
OP2 P OP3 115.5 109.4
OP2 P O3' 81.9 109.5
P OP2 HOP2 123.9 106.8
OP3 P O3' 90.8 109.5
P OP3 HOP3 116.4 106.9
P O3' C3' 125.5 106.7
C5' O5' H5' 107.0 106.8
O5' C5' C4' 107.0 109.5
O5' C5' H5'1 113.2 109.4
O5' C5' H5'' 113.1 109.4
C4' C5' H5'1 113.1 109.5
C4' C5' H5'' 113.1 109.5
C5' C4' O4' 108.7 110.8
C5' C4' C3' 111.7 110.6
C5' C4' H4' 107.8 110.5
H5'1 C5' H5'' 97.4 109.5
O4' C4' C3' 107.1 103.6
O4' C4' H4' 112.3 110.5
C4' O4' C1' 108.9 106.9
C3' C4' H4' 109.4 110.7
C4' C3' O3' 111.1 110.9
C4' C3' C2' 106.8 102.1
C4' C3' H3' 110.8 110.9
O4' C1' C2' 108.4 107.4
O4' C1' N1 116.1 109.9
O4' C1' H1' 104.9 109.9
O3' C3' C2' 111.4 110.9
O3' C3' H3' 106.2 110.9
C2' C3' H3' 110.5 111.0
C3' C2' C1' 103.0 104.2
C3' C2' H2' 114.7 110.6
C3' C2' H2'' 114.7 110.4
C1' C2' H2' 114.7 110.5
C1' C2' H2'' 114.7 110.5
C2' C1' N1 107.2 109.9
C2' C1' H1' 114.2 109.8
H2' C2' H2'' 95.7 110.6
N1 C1' H1' 106.2 109.9
C1' N1 C2 115.6 119.7
C1' N1 C6 124.1 119.7
C2 N1 C6 120.2 120.6
N1 C2 O2 124.6 119.6
N1 C2 N3 116.8 120.9
N1 C6 C5 121.3 119.7
N1 C6 H6 121.0 120.2
O2 C2 N3 118.6 119.5
C2 N3 C4 126.1 120.3
C2 N3 H3 116.5 119.9
C4 N3 H3 117.4 119.8
N3 C4 O4 117.3 120.3
N3 C4 C5 116.4 119.4
O4 C4 C5 126.3 120.3
C4 C5 C5M 119.3 120.4
C4 C5 C6 119.2 119.1
C5M C5 C6 121.5 120.5
C5 C5M H51 119.3 109.5
C5 C5M H52 108.6 109.5
C5 C5M H53 108.6 109.5
C5 C6 H6 117.7 120.1
H51 C5M H52 108.7 109.5
H51 C5M H53 108.7 109.5
H52 C5M H53 101.4 109.4

Torsion Angles for T3P

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 OP3 155.9 120.0
OP2 P OP1 O3' 71.2 240.0
OP1 P OP2 HOP2 180.0 300.0
OP3 P OP1 O3' 275.3 120.1
OP1 P OP3 HOP3 180.0 180.0
OP1 P O3' C3' 255.2 60.1
OP1 P OP2 OP3 203.9 240.0
OP1 P OP2 O3' 291.0 120.0
OP3 P OP2 O3' 87.1 240.0
OP2 P OP3 HOP3 22.1 60.1
OP2 P O3' C3' 127.8 180.0
OP1 P OP3 OP2 157.9 120.0
OP1 P OP3 O3' 76.5 240.0
OP2 P OP3 O3' 278.6 120.0
OP3 P OP2 HOP2 336.1 60.0
OP3 P O3' C3' 12.2 300.0
OP1 P O3' OP2 127.4 240.0
OP1 P O3' OP3 243.0 120.1
OP2 P O3' OP3 115.6 240.0
O3' P OP2 HOP2 249.0 180.0
O3' P OP3 HOP3 103.5 300.1
C4' C3' O3' P 209.4 234.1
P O3' C3' C2' 90.4 121.5
P O3' C3' H3' 330.0 357.7
HOP2 OP2 P OP3 336.1 60.0
HOP2 OP2 P O3' 249.0 180.0
HOP3 OP3 P O3' 103.5 300.1
C4' C5' O5' H5'1 234.7 120.0
C4' C5' O5' H5'' 125.2 240.0
O5' C5' C4' O4' 62.1 65.7
O5' C5' C4' C3' 180.0 180.0
O5' C5' C4' H4' 300.2 302.9
H5'1 C5' O5' H5'' 250.5 120.0
H5' O5' C5' C4' 180.0 180.0
H5' O5' C5' H5'1 305.2 60.0
H5' O5' C5' H5'' 54.7 300.0
C4' C5' O5' H5' 180.0 180.0
O5' C5' C4' H5'1 125.3 240.0
O5' C5' C4' H5'' 234.8 120.0
H5'1 C5' C4' H5'' 109.5 239.9
O4' C4' C5' C3' 242.1 245.7
O4' C4' C5' H4' 122.0 122.8
C5' C4' O4' C1' 122.6 158.6
C3' C4' C5' H4' 239.8 237.1
C5' C4' C3' O3' 103.1 86.1
C5' C4' C3' C2' 224.7 204.3
C5' C4' C3' H3' 345.2 322.5
H5'1 C5' O5' H5' 305.2 60.0
O5' C5' H5'1 C4' 238.1 120.0
O5' C5' H5'1 H5'' 119.1 240.0
C4' C5' H5'1 H5'' 241.0 120.0
H5'1 C5' C4' O4' 296.8 185.7
H5'1 C5' C4' C3' 54.7 300.0
H5'1 C5' C4' H4' 174.9 62.9
H5'' C5' O5' H5' 54.7 300.0
O5' C5' H5'' C4' 121.9 240.0
O5' C5' H5'' H5'1 240.9 120.0
C4' C5' H5'' H5'1 119.0 240.0
H5'' C5' C4' O4' 187.4 305.8
H5'' C5' C4' C3' 305.2 60.0
H5'' C5' C4' H4' 65.4 182.9
O4' C4' C5' H5'1 296.8 185.7
O4' C4' C5' H5'' 187.4 305.8
C5' C4' O4' C3' 120.8 118.6
C5' C4' O4' H4' 240.8 237.2
C3' C4' O4' H4' 120.1 118.6
O4' C4' C3' O3' 221.9 204.9
O4' C4' C3' C2' 343.6 323.0
O4' C4' C3' H3' 104.1 81.3
C4' O4' C1' C2' 13.3 333.7
C4' O4' C1' N1 252.6 214.2
C4' O4' C1' H1' 135.7 93.1
P O3' C3' C4' 209.4 234.1
C3' C4' C5' H5'1 54.7 300.0
C3' C4' C5' H5'' 305.2 60.0
C5' C4' C3' O4' 241.1 241.3
C5' C4' C3' H4' 119.2 122.8
O4' C4' C3' H4' 238.1 241.5
C3' C4' O4' C1' 1.8 39.9
O3' C3' C4' C2' 238.3 241.9
O3' C3' C4' H3' 117.9 123.6
C2' C3' C4' H3' 239.5 241.7
C4' C3' C2' C1' 23.4 20.9
C4' C3' C2' H2' 148.7 262.3
C4' C3' C2' H2'' 258.1 139.6
H4' C4' C5' H5'1 174.9 62.9
H4' C4' C5' H5'' 65.4 182.9
C5' C4' H4' O4' 119.7 123.0
C5' C4' H4' C3' 238.4 237.1
O4' C4' H4' C3' 118.7 114.1
H4' C4' O4' C1' 241.7 281.4
H4' C4' C3' O3' 343.9 323.3
H4' C4' C3' C2' 105.5 81.4
H4' C4' C3' H3' 226.0 199.7
C1' O4' C4' C3' 1.8 39.9
C1' O4' C4' H4' 241.7 281.4
C3' C2' C1' O4' 337.2 1.9
O4' C1' C2' H2' 211.9 120.7
O4' C1' C2' H2'' 102.5 243.3
C2' C1' O4' N1 120.7 119.5
C2' C1' O4' H1' 237.6 240.5
N1 C1' O4' H1' 116.9 121.0
O4' C1' N1 C2 203.6 58.3
O4' C1' N1 C6 23.5 238.3
O3' C3' C4' H4' 343.9 323.3
C4' C3' O3' C2' 119.0 112.6
C4' C3' O3' H3' 239.4 236.4
C2' C3' O3' H3' 120.4 123.8
O3' C3' C2' C1' 144.9 139.1
O3' C3' C2' H2' 270.2 20.4
O3' C3' C2' H2'' 19.6 257.7
C2' C3' C4' H4' 105.5 81.4
C4' C3' C2' O3' 238.5 241.9
C4' C3' C2' H3' 120.7 118.2
O4' C1' C2' C3' 337.2 1.9
O3' C3' C2' H3' 242.1 236.3
C1' C2' C3' H2' 234.7 118.7
C1' C2' C3' H2'' 125.3 241.4
C3' C2' C1' N1 103.3 121.4
C3' C2' C1' H1' 220.7 242.4
H2' C2' C3' H2'' 250.6 122.7
H3' C3' C4' H4' 226.0 199.7
C4' C3' H3' O3' 120.8 123.6
C4' C3' H3' C2' 241.8 247.3
O3' C3' H3' C2' 121.0 123.7
H3' C3' C2' C1' 262.7 262.8
H3' C3' C2' H2' 28.0 144.1
H3' C3' C2' H2'' 137.5 21.4
O4' C1' C2' N1 233.9 240.5
O4' C1' C2' H1' 116.5 119.5
C1' C2' C3' H3' 262.7 262.8
C3' C2' C1' H2' 125.3 241.3
C3' C2' C1' H2'' 234.7 118.6
H2' C2' C1' H2'' 109.4 237.3
N1 C1' C2' H1' 242.6 239.0
C2' C1' N1 C2 82.3 300.3
C2' C1' N1 C6 262.2 120.3
H2' C2' C3' H3' 28.0 144.1
C3' C2' H2' C1' 241.1 114.8
C3' C2' H2' H2'' 120.5 237.4
C1' C2' H2' H2'' 239.5 122.6
H2' C2' C1' N1 338.0 240.2
H2' C2' C1' H1' 95.4 1.1
H2'' C2' C3' H3' 137.5 21.4
C3' C2' H2'' C1' 118.9 245.3
C3' C2' H2'' H2' 239.4 122.7
C1' C2' H2'' H2' 120.5 237.4
H2'' C2' C1' N1 228.6 2.8
H2'' C2' C1' H1' 345.9 123.8
O4' C1' N1 C2' 121.3 118.0
O4' C1' N1 H1' 243.8 239.0
N1 C1' C2' H2' 338.0 240.2
N1 C1' C2' H2'' 228.6 2.8
C2' C1' N1 H1' 122.5 121.0
C2 N1 C1' C6 180.1 180.0
C1' N1 C2 O2 359.8 360.0
C1' N1 C2 N3 179.8 180.0
C1' N1 C6 C5 180.2 180.0
C1' N1 C6 H6 0.1 360.0
O4' C1' H1' C2' 241.5 242.0
O4' C1' H1' N1 123.5 121.0
H1' C1' C2' H2' 95.4 1.1
H1' C1' C2' H2'' 345.9 123.8
C2' C1' H1' N1 242.1 239.0
H1' C1' N1 C2 319.8 179.3
H1' C1' N1 C6 139.7 359.3
C2 N1 C1' H1' 319.8 179.3
C1' N1 C2 C6 179.9 180.0
C2 N1 C6 C5 0.0 360.0
C2 N1 C6 H6 180.0 180.0
O2 C2 N1 N3 180.0 180.0
N1 C2 N3 C4 0.0 359.8
N1 C2 N3 H3 180.0 180.0
C6 N1 C1' H1' 139.7 359.3
C1' N1 C6 C2 180.1 180.0
C6 N1 C2 O2 180.0 180.0
C6 N1 C2 N3 359.9 360.0
C4 C5 C6 N1 0.1 0.2
C5M C5 C6 N1 179.9 180.0
C5 C6 N1 H6 180.0 180.0
O2 C2 N1 C6 180.0 180.0
N1 C2 O2 N3 180.0 180.0
O2 C2 N3 C4 180.0 179.8
O2 C2 N3 H3 360.0 0.0
N3 C2 N1 C6 359.9 360.0
N1 C2 N3 O2 180.0 180.0
C4 N3 C2 H3 180.0 179.8
C2 N3 C4 O4 180.0 180.0
C2 N3 C4 C5 0.1 0.4
C2 N3 C4 H3 180.0 180.2
O4 C4 N3 C5 180.0 179.6
N3 C4 C5 C5M 180.0 179.8
N3 C4 C5 C6 359.8 359.5
C2 N3 H3 C4 180.0 179.8
H3 N3 C4 O4 0.1 359.8
H3 N3 C4 C5 180.1 180.2
O4 C4 N3 H3 0.1 359.8
N3 C4 O4 C5 180.1 180.4
O4 C4 C5 C5M 0.1 0.2
O4 C4 C5 C6 179.9 179.9
N1 C6 C5 C4 0.1 0.2
C5 C4 N3 H3 180.1 180.2
N3 C4 C5 O4 179.9 179.6
C5M C5 C4 C6 180.2 180.3
C4 C5 C5M H51 180.0 359.8
C4 C5 C5M H52 305.2 119.8
C4 C5 C5M H53 54.7 239.7
C4 C5 C6 H6 180.1 180.2
N1 C6 C5 C5M 179.9 180.0
C4 C5 C5M C6 179.8 179.7
C5M C5 C6 H6 359.9 360.0
H51 C5M C5 H52 234.8 240.0
H51 C5M C5 H53 125.3 120.0
H52 C5M C5 H53 250.5 240.1
N1 C6 C5 H6 180.0 180.0
C4 C5 C6 C5M 180.2 180.3
C6 C5 C5M H51 0.2 180.0
C6 C5 C5M H52 125.4 300.1
C6 C5 C5M H53 234.9 60.0
H51 C5M C5 C6 0.2 180.0
C5 C5M H51 H52 125.2 120.0
C5 C5M H51 H53 234.8 240.0
H52 C5M H51 H53 109.5 119.9
H52 C5M C5 C6 125.4 300.1
C5 C5M H52 H51 228.8 240.0
C5 C5M H52 H53 114.3 120.0
H51 C5M H52 H53 245.6 240.0
H53 C5M C5 C6 234.9 60.0
C5 C5M H53 H51 131.3 120.1
C5 C5M H53 H52 245.7 240.0
H51 C5M H53 H52 114.4 120.0
N1 C6 H6 C5 180.0 180.0