PDB Chemical Component T3J
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for T3J
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O01 |
C02 |
1.225 |
1.213 |
| C02 |
C03 |
1.505 |
1.507 |
| C02 |
N05 |
1.351 |
1.349 |
| N05 |
C06 |
1.470 |
1.471 |
| C06 |
C07 |
1.510 |
1.534 |
| C07 |
O08 |
1.435 |
1.429 |
| O08 |
C09 |
1.421 |
1.430 |
| C10 |
C11 |
1.384 |
1.383 |
| C11 |
C12 |
1.379 |
1.381 |
| C12 |
C13 |
1.360 |
1.385 |
| C13 |
F14 |
1.359 |
1.351 |
| C13 |
C15 |
1.365 |
1.385 |
| C15 |
C16 |
1.382 |
1.382 |
| C09 |
C10 |
1.510 |
1.507 |
| C09 |
C17 |
1.523 |
1.533 |
| N05 |
C17 |
1.461 |
1.471 |
| C10 |
C16 |
1.387 |
1.383 |
| C15 |
H151 |
1.080 |
1.080 |
| C17 |
H171 |
1.100 |
1.090 |
| C17 |
H172 |
1.100 |
1.090 |
| C03 |
H031 |
1.100 |
1.090 |
| C03 |
H1 |
1.100 |
1.090 |
| C03 |
H032 |
1.100 |
1.090 |
| C06 |
H061 |
1.100 |
1.090 |
| C06 |
H062 |
1.100 |
1.090 |
| C07 |
H071 |
1.100 |
1.090 |
| C07 |
H072 |
1.100 |
1.090 |
| C09 |
H091 |
1.100 |
1.090 |
| C11 |
H111 |
1.080 |
1.081 |
| C12 |
H121 |
1.080 |
1.080 |
| C16 |
H161 |
1.080 |
1.080 |
Bond Angles for T3J
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C03 |
C02 |
N05 |
117.9 |
120.0 |
| C02 |
C03 |
H031 |
109.5 |
109.5 |
| C02 |
C03 |
H1 |
109.5 |
109.5 |
| C02 |
C03 |
H032 |
109.5 |
109.4 |
| C02 |
N05 |
C06 |
122.0 |
121.0 |
| N05 |
C06 |
H061 |
109.2 |
109.6 |
| N05 |
C06 |
H062 |
109.2 |
109.7 |
| C06 |
C07 |
O08 |
112.0 |
109.2 |
| C07 |
C06 |
H061 |
109.3 |
109.7 |
| C07 |
C06 |
H062 |
109.3 |
109.7 |
| C06 |
C07 |
H071 |
108.9 |
109.5 |
| C06 |
C07 |
H072 |
108.8 |
109.5 |
| C07 |
O08 |
C09 |
112.5 |
114.2 |
| O08 |
C07 |
H071 |
108.8 |
109.5 |
| O08 |
C07 |
H072 |
108.8 |
109.5 |
| O08 |
C09 |
H091 |
109.2 |
109.6 |
| C10 |
C11 |
C12 |
121.1 |
120.1 |
| C09 |
C10 |
C11 |
119.4 |
120.0 |
| C11 |
C10 |
C16 |
118.6 |
120.0 |
| C10 |
C11 |
H111 |
119.4 |
119.9 |
| C12 |
C11 |
H111 |
119.4 |
120.0 |
| C11 |
C12 |
H121 |
120.9 |
120.1 |
| C12 |
C13 |
F14 |
117.9 |
120.0 |
| C15 |
C13 |
F14 |
119.0 |
120.0 |
| C13 |
C15 |
C16 |
118.0 |
120.0 |
| C13 |
C15 |
H151 |
121.0 |
120.1 |
| C10 |
C16 |
C15 |
120.9 |
120.0 |
| C16 |
C15 |
H151 |
121.0 |
120.0 |
| C15 |
C16 |
H161 |
119.5 |
120.0 |
| C09 |
C10 |
C16 |
122.0 |
120.0 |
| C09 |
C17 |
H171 |
109.2 |
109.7 |
| C09 |
C17 |
H172 |
109.2 |
109.7 |
| N05 |
C17 |
H171 |
109.2 |
109.7 |
| N05 |
C17 |
H172 |
109.2 |
109.6 |
| C10 |
C16 |
H161 |
119.6 |
120.0 |
| H171 |
C17 |
H172 |
109.5 |
109.7 |
| H031 |
C03 |
H1 |
109.4 |
109.5 |
| H031 |
C03 |
H032 |
109.5 |
109.4 |
| H1 |
C03 |
H032 |
109.5 |
109.5 |
| H061 |
C06 |
H062 |
109.4 |
109.7 |
| H071 |
C07 |
H072 |
109.5 |
109.6 |
Torsion Angles for T3J
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O01 |
C02 |
C03 |
H031 |
0.0 |
174.6 |
| O01 |
C02 |
C03 |
H1 |
120.0 |
294.6 |
| O01 |
C02 |
C03 |
H032 |
240.0 |
54.6 |
| C03 |
C02 |
N05 |
C06 |
181.3 |
4.7 |
| H031 |
C03 |
C02 |
H1 |
240.0 |
240.0 |
| H031 |
C03 |
C02 |
H032 |
120.0 |
120.0 |
| H1 |
C03 |
C02 |
H032 |
240.0 |
240.0 |
| N05 |
C02 |
C03 |
H031 |
179.6 |
354.6 |
| N05 |
C02 |
C03 |
H1 |
299.6 |
114.6 |
| N05 |
C02 |
C03 |
H032 |
59.6 |
234.6 |
| C02 |
N05 |
C06 |
H061 |
240.4 |
110.8 |
| C02 |
N05 |
C06 |
H062 |
0.1 |
350.3 |
| C02 |
N05 |
C17 |
H171 |
83.1 |
9.8 |
| C02 |
N05 |
C17 |
H172 |
323.4 |
249.2 |
| N05 |
C06 |
C07 |
O08 |
33.3 |
307.7 |
| C07 |
C06 |
N05 |
H061 |
239.8 |
119.7 |
| C07 |
C06 |
N05 |
H062 |
120.2 |
240.2 |
| N05 |
C06 |
C07 |
H071 |
153.7 |
67.6 |
| N05 |
C06 |
C07 |
H072 |
272.9 |
187.8 |
| C06 |
N05 |
C17 |
H171 |
265.2 |
189.8 |
| C06 |
N05 |
C17 |
H172 |
145.5 |
69.2 |
| H061 |
C06 |
N05 |
H062 |
240.3 |
120.5 |
| C02 |
N05 |
C06 |
C07 |
120.3 |
230.5 |
| N05 |
C06 |
C07 |
H061 |
120.1 |
240.3 |
| N05 |
C06 |
C07 |
H062 |
239.9 |
119.8 |
| C06 |
C07 |
O08 |
C09 |
28.4 |
62.6 |
| O08 |
C07 |
C06 |
H071 |
239.6 |
240.1 |
| O08 |
C07 |
C06 |
H072 |
120.4 |
119.9 |
| H061 |
C06 |
C07 |
H062 |
119.7 |
239.5 |
| H071 |
C07 |
C06 |
H072 |
240.8 |
239.8 |
| O08 |
C07 |
C06 |
H061 |
273.2 |
67.4 |
| O08 |
C07 |
C06 |
H062 |
153.4 |
187.9 |
| C06 |
C07 |
O08 |
H071 |
120.4 |
119.9 |
| C06 |
C07 |
O08 |
H072 |
239.6 |
240.1 |
| C07 |
O08 |
C09 |
H091 |
52.7 |
57.4 |
| H071 |
C07 |
O08 |
H072 |
119.2 |
120.2 |
| C09 |
O08 |
C07 |
H071 |
268.1 |
302.7 |
| C09 |
O08 |
C07 |
H072 |
148.8 |
182.5 |
| O08 |
C09 |
C17 |
H171 |
156.4 |
172.0 |
| O08 |
C09 |
C17 |
H172 |
276.1 |
292.6 |
| C12 |
C11 |
C10 |
H111 |
180.0 |
179.9 |
| C10 |
C11 |
C12 |
H121 |
179.9 |
180.1 |
| C11 |
C10 |
C16 |
C15 |
359.5 |
0.1 |
| C09 |
C10 |
C11 |
C16 |
180.0 |
179.8 |
| C11 |
C10 |
C16 |
H161 |
179.5 |
180.1 |
| C09 |
C10 |
C11 |
C12 |
180.3 |
179.7 |
| C12 |
C11 |
C10 |
C16 |
0.3 |
359.9 |
| C10 |
C11 |
C12 |
H111 |
180.0 |
180.1 |
| C11 |
C12 |
C13 |
F14 |
180.1 |
180.0 |
| C10 |
C11 |
C12 |
C13 |
359.9 |
0.1 |
| C15 |
C13 |
C12 |
F14 |
179.9 |
180.0 |
| C12 |
C13 |
C15 |
C16 |
359.8 |
0.1 |
| C12 |
C13 |
C15 |
H151 |
179.8 |
180.0 |
| F14 |
C13 |
C15 |
C16 |
179.7 |
180.1 |
| F14 |
C13 |
C15 |
H151 |
359.7 |
360.0 |
| C12 |
C13 |
C15 |
F14 |
180.1 |
180.0 |
| C10 |
C16 |
C15 |
C13 |
0.5 |
359.9 |
| C16 |
C15 |
C13 |
H151 |
180.0 |
180.1 |
| C13 |
C15 |
C16 |
H161 |
180.5 |
179.9 |
| C16 |
C15 |
C13 |
F14 |
179.7 |
180.1 |
| C13 |
C15 |
C16 |
H151 |
180.0 |
179.9 |
| C09 |
C10 |
C16 |
C15 |
179.5 |
180.3 |
| C10 |
C16 |
C15 |
H161 |
180.0 |
179.9 |
| C11 |
C10 |
C09 |
C16 |
180.0 |
180.2 |
| C09 |
C10 |
C11 |
H111 |
0.3 |
359.8 |
| C09 |
C10 |
C16 |
H161 |
359.5 |
0.3 |
| C17 |
C09 |
C10 |
C11 |
129.6 |
99.9 |
| C17 |
C09 |
C10 |
C16 |
309.6 |
279.7 |
| N05 |
C17 |
C09 |
H171 |
239.9 |
240.3 |
| N05 |
C17 |
C09 |
H172 |
120.2 |
119.7 |
| H171 |
C17 |
C09 |
H172 |
240.3 |
239.4 |
| C09 |
C17 |
N05 |
H171 |
120.2 |
119.7 |
| C09 |
C17 |
N05 |
H172 |
239.9 |
240.3 |
| H171 |
C17 |
N05 |
H172 |
119.7 |
120.6 |
| C16 |
C10 |
C11 |
C12 |
0.3 |
359.9 |
| C09 |
C10 |
C16 |
C11 |
180.0 |
180.2 |
| C16 |
C10 |
C11 |
H111 |
180.4 |
180.0 |
| C13 |
C15 |
C16 |
C10 |
0.5 |
359.9 |
| C10 |
C16 |
C15 |
H151 |
180.5 |
180.0 |
| C15 |
C16 |
C10 |
H161 |
180.0 |
180.1 |
| H151 |
C15 |
C13 |
F14 |
359.7 |
360.0 |
| C13 |
C15 |
H151 |
C16 |
180.0 |
180.1 |
| H151 |
C15 |
C16 |
H161 |
0.5 |
0.0 |
| C09 |
C17 |
H171 |
H172 |
119.5 |
120.6 |
| N05 |
C17 |
H171 |
H172 |
240.5 |
239.5 |
| C09 |
C17 |
H172 |
H171 |
240.5 |
239.4 |
| N05 |
C17 |
H172 |
H171 |
119.5 |
120.5 |
| H031 |
C03 |
C02 |
N05 |
179.6 |
354.6 |
| C02 |
C03 |
H031 |
H1 |
120.0 |
120.0 |
| C02 |
C03 |
H031 |
H032 |
240.0 |
240.0 |
| H1 |
C03 |
H031 |
H032 |
120.0 |
120.0 |
| H1 |
C03 |
C02 |
N05 |
299.6 |
114.6 |
| C02 |
C03 |
H1 |
H031 |
240.0 |
240.0 |
| C02 |
C03 |
H1 |
H032 |
120.0 |
120.0 |
| H031 |
C03 |
H1 |
H032 |
240.1 |
240.0 |
| H032 |
C03 |
C02 |
N05 |
59.6 |
234.6 |
| C02 |
C03 |
H032 |
H031 |
120.0 |
120.0 |
| C02 |
C03 |
H032 |
H1 |
240.0 |
240.0 |
| H031 |
C03 |
H032 |
H1 |
119.9 |
120.0 |
| N05 |
C06 |
H061 |
H062 |
119.5 |
239.5 |
| H061 |
C06 |
C07 |
O08 |
273.2 |
67.4 |
| C07 |
C06 |
H061 |
H062 |
240.4 |
120.6 |
| H061 |
C06 |
C07 |
H071 |
33.5 |
187.3 |
| H061 |
C06 |
C07 |
H072 |
152.8 |
307.5 |
| N05 |
C06 |
H062 |
H061 |
240.5 |
120.5 |
| H062 |
C06 |
C07 |
O08 |
153.4 |
187.9 |
| C07 |
C06 |
H062 |
H061 |
119.6 |
239.4 |
| H062 |
C06 |
C07 |
H071 |
273.8 |
307.9 |
| H062 |
C06 |
C07 |
H072 |
33.1 |
68.0 |
| C06 |
C07 |
H071 |
O08 |
237.7 |
240.3 |
| H071 |
C07 |
C06 |
H061 |
33.5 |
187.3 |
| H071 |
C07 |
C06 |
H062 |
273.8 |
307.9 |
| C06 |
C07 |
H071 |
H072 |
118.9 |
120.1 |
| H071 |
C07 |
O08 |
C09 |
268.1 |
302.7 |
| O08 |
C07 |
H071 |
H072 |
241.1 |
239.8 |
| C06 |
C07 |
H072 |
O08 |
122.3 |
119.7 |
| H072 |
C07 |
C06 |
H061 |
152.8 |
307.5 |
| H072 |
C07 |
C06 |
H062 |
33.1 |
68.0 |
| C06 |
C07 |
H072 |
H071 |
241.1 |
239.9 |
| H072 |
C07 |
O08 |
C09 |
148.8 |
182.5 |
| O08 |
C07 |
H072 |
H071 |
118.8 |
120.2 |
| H091 |
C09 |
C10 |
C11 |
10.1 |
339.9 |
| H091 |
C09 |
C10 |
C16 |
190.1 |
159.7 |
| H091 |
C09 |
C17 |
H171 |
37.0 |
52.0 |
| H091 |
C09 |
C17 |
H172 |
156.7 |
172.6 |
| C10 |
C11 |
H111 |
C12 |
180.0 |
179.9 |
| H111 |
C11 |
C10 |
C16 |
180.4 |
180.0 |
| H111 |
C11 |
C12 |
H121 |
359.9 |
360.0 |
| H121 |
C12 |
C11 |
H111 |
359.9 |
360.0 |
| H121 |
C12 |
C13 |
F14 |
0.1 |
360.0 |
| C10 |
C16 |
H161 |
C15 |
180.0 |
180.1 |
| H161 |
C16 |
C15 |
H151 |
0.5 |
0.0 |