PDB Chemical Component T3E
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for T3E
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C7A |
N6A |
1.458 |
1.465 |
N6A |
C3A |
1.441 |
1.381 |
C3A |
N2A |
1.380 |
1.301 |
C3A |
S4A |
1.635 |
1.709 |
N2A |
C1A |
1.474 |
1.312 |
C1A |
C8A |
1.463 |
1.507 |
C1A |
C5A |
1.419 |
1.354 |
C5A |
C4 |
1.480 |
1.470 |
C5A |
S4A |
1.566 |
1.762 |
C4 |
N3 |
1.366 |
1.333 |
C4 |
C5 |
1.364 |
1.417 |
N3 |
C2 |
1.401 |
1.323 |
C2 |
N7 |
1.435 |
1.383 |
C2 |
N1 |
1.368 |
1.327 |
N7 |
C1B |
1.453 |
1.398 |
C1B |
C2B |
1.381 |
1.390 |
C1B |
C6B |
1.417 |
1.388 |
C2B |
C3B |
1.402 |
1.380 |
C3B |
S7B |
1.765 |
1.762 |
C3B |
C4B |
1.407 |
1.382 |
S7B |
O8B |
1.454 |
1.421 |
S7B |
N9B |
1.642 |
1.656 |
S7B |
O1B |
1.457 |
1.421 |
C4B |
C5B |
1.400 |
1.383 |
C5B |
C6B |
1.421 |
1.381 |
N1 |
C6 |
1.373 |
1.321 |
C6 |
C5 |
1.386 |
1.399 |
C5 |
C8 |
1.482 |
1.432 |
C8 |
N9 |
1.150 |
1.136 |
C7A |
H7A1 |
1.100 |
1.089 |
C7A |
H7A2 |
1.100 |
1.090 |
C7A |
H7A3 |
1.100 |
1.090 |
N6A |
H6A |
1.000 |
0.970 |
C8A |
H8A1 |
1.100 |
1.090 |
C8A |
H8A2 |
1.100 |
1.090 |
C8A |
H8A3 |
1.100 |
1.091 |
N7 |
H7 |
1.000 |
0.970 |
C2B |
H2B |
1.080 |
1.081 |
C6B |
H6B |
1.080 |
1.080 |
C4B |
H4B |
1.080 |
1.081 |
N9B |
H9B1 |
1.000 |
0.970 |
N9B |
H9B2 |
1.000 |
0.970 |
C5B |
H5B |
1.080 |
1.081 |
C6 |
H6 |
1.080 |
1.080 |
Bond Angles for T3E
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C7A |
N6A |
C3A |
120.0 |
120.0 |
N6A |
C7A |
H7A1 |
109.5 |
109.5 |
N6A |
C7A |
H7A2 |
109.5 |
109.5 |
N6A |
C7A |
H7A3 |
109.5 |
109.4 |
C7A |
N6A |
H6A |
106.8 |
120.0 |
N6A |
C3A |
N2A |
124.3 |
124.8 |
N6A |
C3A |
S4A |
127.8 |
124.8 |
C3A |
N6A |
H6A |
106.8 |
120.0 |
N2A |
C3A |
S4A |
107.8 |
110.3 |
C3A |
N2A |
C1A |
110.5 |
117.1 |
C3A |
S4A |
C5A |
102.3 |
90.4 |
N2A |
C1A |
C8A |
119.0 |
122.9 |
N2A |
C1A |
C5A |
112.2 |
114.3 |
C8A |
C1A |
C5A |
128.7 |
122.9 |
C1A |
C8A |
H8A1 |
109.5 |
109.5 |
C1A |
C8A |
H8A2 |
109.5 |
109.5 |
C1A |
C8A |
H8A3 |
109.4 |
109.5 |
C1A |
C5A |
C4 |
131.1 |
126.0 |
C1A |
C5A |
S4A |
107.1 |
107.9 |
C4 |
C5A |
S4A |
121.8 |
126.1 |
C5A |
C4 |
N3 |
119.8 |
120.6 |
C5A |
C4 |
C5 |
120.8 |
120.6 |
N3 |
C4 |
C5 |
119.4 |
118.7 |
C4 |
N3 |
C2 |
119.1 |
120.7 |
C4 |
C5 |
C6 |
120.6 |
118.1 |
C4 |
C5 |
C8 |
120.8 |
121.0 |
N3 |
C2 |
N7 |
121.9 |
118.9 |
N3 |
C2 |
N1 |
122.5 |
122.2 |
N7 |
C2 |
N1 |
115.6 |
118.9 |
C2 |
N7 |
C1B |
121.3 |
120.0 |
C2 |
N7 |
H7 |
119.3 |
120.0 |
C2 |
N1 |
C6 |
116.7 |
121.3 |
N7 |
C1B |
C2B |
113.6 |
120.1 |
N7 |
C1B |
C6B |
126.7 |
120.1 |
C1B |
N7 |
H7 |
119.3 |
120.0 |
C2B |
C1B |
C6B |
119.8 |
119.9 |
C1B |
C2B |
C3B |
118.8 |
119.9 |
C1B |
C2B |
H2B |
120.6 |
120.0 |
C1B |
C6B |
C5B |
121.3 |
119.9 |
C1B |
C6B |
H6B |
119.3 |
120.1 |
C2B |
C3B |
S7B |
116.1 |
119.9 |
C2B |
C3B |
C4B |
122.6 |
120.1 |
C3B |
C2B |
H2B |
120.6 |
120.0 |
S7B |
C3B |
C4B |
121.3 |
119.9 |
C3B |
S7B |
O8B |
106.9 |
106.4 |
C3B |
S7B |
N9B |
108.4 |
107.2 |
C3B |
S7B |
O1B |
106.7 |
106.4 |
C3B |
C4B |
C5B |
119.1 |
120.1 |
C3B |
C4B |
H4B |
120.5 |
120.0 |
O8B |
S7B |
N9B |
109.6 |
106.4 |
O8B |
S7B |
O1B |
114.1 |
123.2 |
N9B |
S7B |
O1B |
110.9 |
106.4 |
S7B |
N9B |
H9B1 |
109.5 |
120.0 |
S7B |
N9B |
H9B2 |
109.5 |
120.0 |
C4B |
C5B |
C6B |
118.5 |
120.1 |
C5B |
C4B |
H4B |
120.5 |
119.9 |
C4B |
C5B |
H5B |
120.8 |
119.9 |
C5B |
C6B |
H6B |
119.3 |
120.0 |
C6B |
C5B |
H5B |
120.8 |
120.0 |
N1 |
C6 |
C5 |
121.7 |
119.1 |
N1 |
C6 |
H6 |
119.1 |
120.5 |
C6 |
C5 |
C8 |
118.5 |
120.9 |
C5 |
C6 |
H6 |
119.2 |
120.5 |
C5 |
C8 |
N9 |
176.7 |
180.0 |
H7A1 |
C7A |
H7A2 |
109.5 |
109.5 |
H7A1 |
C7A |
H7A3 |
109.4 |
109.5 |
H7A2 |
C7A |
H7A3 |
109.4 |
109.4 |
H8A1 |
C8A |
H8A2 |
109.5 |
109.5 |
H8A1 |
C8A |
H8A3 |
109.5 |
109.5 |
H8A2 |
C8A |
H8A3 |
109.5 |
109.4 |
H9B1 |
N9B |
H9B2 |
109.4 |
120.0 |
Torsion Angles for T3E
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C7A |
N6A |
C3A |
N2A |
93.0 |
0.1 |
C7A |
N6A |
C3A |
S4A |
274.4 |
179.7 |
C3A |
N6A |
C7A |
H6A |
238.5 |
180.0 |
H7A1 |
C7A |
N6A |
H7A2 |
240.0 |
240.0 |
H7A1 |
C7A |
N6A |
H7A3 |
120.0 |
120.0 |
H7A2 |
C7A |
N6A |
H7A3 |
240.0 |
240.0 |
C3A |
N6A |
C7A |
H7A1 |
180.0 |
300.0 |
C3A |
N6A |
C7A |
H7A2 |
300.0 |
60.0 |
C3A |
N6A |
C7A |
H7A3 |
60.0 |
179.9 |
C7A |
N6A |
C3A |
H6A |
121.5 |
180.0 |
N2A |
C3A |
N6A |
S4A |
178.6 |
180.4 |
N6A |
C3A |
N2A |
C1A |
180.6 |
179.9 |
N6A |
C3A |
S4A |
C5A |
180.5 |
180.0 |
N6A |
C3A |
N2A |
S4A |
181.2 |
179.6 |
N2A |
C3A |
N6A |
H6A |
331.5 |
180.0 |
N2A |
C3A |
S4A |
C5A |
1.7 |
359.7 |
C3A |
N2A |
C1A |
C8A |
177.4 |
180.0 |
C3A |
N2A |
C1A |
C5A |
359.1 |
0.0 |
N6A |
C3A |
S4A |
N2A |
178.8 |
180.4 |
S4A |
C3A |
N6A |
H6A |
152.9 |
359.6 |
S4A |
C3A |
N2A |
C1A |
359.4 |
0.3 |
C1A |
C5A |
S4A |
C3A |
357.9 |
0.3 |
C4 |
C5A |
S4A |
C3A |
179.3 |
180.0 |
C1A |
N2A |
C3A |
S4A |
359.4 |
0.3 |
C8A |
C1A |
N2A |
C5A |
178.3 |
180.0 |
N2A |
C1A |
C8A |
H8A1 |
0.0 |
90.0 |
N2A |
C1A |
C8A |
H8A2 |
120.0 |
210.0 |
N2A |
C1A |
C8A |
H8A3 |
240.0 |
330.0 |
N2A |
C1A |
C5A |
C4 |
180.4 |
180.0 |
N2A |
C1A |
C5A |
S4A |
2.0 |
359.7 |
N2A |
C1A |
C8A |
C5A |
182.0 |
180.0 |
C8A |
C1A |
C5A |
C4 |
2.3 |
0.0 |
C8A |
C1A |
C5A |
S4A |
183.9 |
179.7 |
H8A1 |
C8A |
C1A |
H8A2 |
240.0 |
239.9 |
H8A1 |
C8A |
C1A |
H8A3 |
120.0 |
120.0 |
H8A2 |
C8A |
C1A |
H8A3 |
240.0 |
240.0 |
C3A |
S4A |
C5A |
C1A |
357.9 |
0.3 |
N2A |
C1A |
C5A |
C8A |
178.1 |
180.0 |
C5A |
C1A |
C8A |
H8A1 |
178.0 |
270.0 |
C5A |
C1A |
C8A |
H8A2 |
298.0 |
30.0 |
C5A |
C1A |
C8A |
H8A3 |
58.0 |
150.0 |
C4 |
C5A |
C1A |
S4A |
178.4 |
180.3 |
C1A |
C5A |
C4 |
N3 |
214.7 |
359.9 |
C1A |
C5A |
C4 |
C5 |
37.6 |
179.7 |
C3A |
S4A |
C5A |
C4 |
179.3 |
180.0 |
C1A |
C5A |
C4 |
S4A |
181.8 |
179.6 |
N3 |
C4 |
C5A |
C5 |
177.1 |
180.2 |
C5A |
C4 |
N3 |
C2 |
181.7 |
180.0 |
C5A |
C4 |
C5 |
C6 |
179.1 |
179.8 |
C5A |
C4 |
C5 |
C8 |
2.1 |
360.0 |
C1A |
C5A |
S4A |
C4 |
178.6 |
180.3 |
S4A |
C5A |
C4 |
N3 |
32.9 |
180.3 |
S4A |
C5A |
C4 |
C5 |
215.9 |
0.1 |
N3 |
C4 |
C5A |
S4A |
32.9 |
180.3 |
C5A |
C4 |
N3 |
C5 |
182.9 |
179.8 |
N3 |
C4 |
C5 |
C6 |
2.0 |
359.6 |
N3 |
C4 |
C5 |
C8 |
185.0 |
179.8 |
C4 |
N3 |
C2 |
N7 |
180.3 |
180.0 |
C4 |
N3 |
C2 |
N1 |
359.6 |
0.0 |
C5 |
C4 |
C5A |
S4A |
215.9 |
0.1 |
C5A |
C4 |
C5 |
N3 |
177.1 |
180.2 |
C5 |
C4 |
N3 |
C2 |
358.8 |
0.2 |
N1 |
C6 |
C5 |
C4 |
358.8 |
0.5 |
C6 |
C5 |
C4 |
C8 |
177.0 |
179.8 |
C4 |
C5 |
C6 |
H6 |
178.8 |
180.2 |
C4 |
C5 |
C8 |
N9 |
263.7 |
140.1 |
C2 |
N3 |
C4 |
C5 |
358.8 |
0.2 |
N7 |
C2 |
N3 |
N1 |
180.7 |
180.0 |
N3 |
C2 |
N7 |
C1B |
351.6 |
174.5 |
N3 |
C2 |
N7 |
H7 |
171.6 |
354.5 |
N3 |
C2 |
N1 |
C6 |
1.1 |
0.0 |
N3 |
C2 |
N7 |
N1 |
179.4 |
180.0 |
N7 |
C2 |
N1 |
C6 |
180.5 |
180.0 |
C2 |
N7 |
C1B |
C2B |
165.9 |
146.3 |
C2 |
N7 |
C1B |
C6B |
345.9 |
326.0 |
C1B |
N7 |
C2 |
H7 |
180.0 |
180.0 |
N3 |
C2 |
N1 |
N7 |
180.6 |
180.0 |
N1 |
C2 |
N7 |
C1B |
172.2 |
354.5 |
N1 |
C2 |
N7 |
H7 |
352.3 |
174.5 |
C2 |
N1 |
C6 |
C5 |
359.7 |
359.7 |
C2 |
N1 |
C6 |
H6 |
179.7 |
180.0 |
C1B |
N7 |
C2 |
N1 |
172.2 |
354.5 |
C2 |
N7 |
C1B |
H7 |
180.0 |
180.0 |
C2B |
C1B |
N7 |
C6B |
180.0 |
180.3 |
N7 |
C1B |
C2B |
C3B |
180.4 |
180.0 |
N7 |
C1B |
C2B |
H2B |
0.4 |
360.0 |
N7 |
C1B |
C6B |
C5B |
180.5 |
179.7 |
N7 |
C1B |
C6B |
H6B |
0.5 |
0.0 |
N7 |
C1B |
C2B |
C6B |
180.0 |
179.7 |
C2B |
C1B |
N7 |
H7 |
345.9 |
326.3 |
C2B |
C1B |
C6B |
C5B |
0.5 |
359.5 |
C2B |
C1B |
C6B |
H6B |
180.5 |
179.8 |
C1B |
C2B |
C3B |
S7B |
178.2 |
180.0 |
C1B |
C2B |
C3B |
C4B |
359.2 |
0.0 |
C3B |
C2B |
C1B |
H2B |
180.0 |
180.0 |
N7 |
C1B |
C6B |
C2B |
180.1 |
180.3 |
C6B |
C1B |
N7 |
H7 |
165.8 |
146.0 |
C6B |
C1B |
C2B |
C3B |
0.4 |
0.2 |
C6B |
C1B |
C2B |
H2B |
180.4 |
180.2 |
C4B |
C5B |
C6B |
C1B |
359.0 |
0.6 |
C5B |
C6B |
C1B |
H6B |
180.0 |
179.7 |
C1B |
C6B |
C5B |
H5B |
179.0 |
180.2 |
C3B |
C2B |
C1B |
C6B |
0.4 |
0.2 |
C1B |
C2B |
C3B |
H2B |
180.0 |
180.0 |
S7B |
C3B |
C2B |
C4B |
179.0 |
180.0 |
C2B |
C3B |
S7B |
O8B |
179.6 |
336.5 |
C2B |
C3B |
S7B |
N9B |
61.6 |
90.0 |
C2B |
C3B |
S7B |
O1B |
302.1 |
203.5 |
C2B |
C3B |
C4B |
C5B |
0.3 |
0.0 |
C2B |
C3B |
C4B |
H4B |
180.3 |
180.0 |
C2B |
C3B |
S7B |
C4B |
181.0 |
180.0 |
S7B |
C3B |
C2B |
H2B |
358.2 |
0.0 |
S7B |
C3B |
C4B |
C5B |
181.3 |
180.0 |
S7B |
C3B |
C4B |
H4B |
1.4 |
0.0 |
O8B |
S7B |
C3B |
N9B |
118.1 |
246.5 |
O8B |
S7B |
C3B |
O1B |
237.5 |
133.0 |
N9B |
S7B |
C3B |
O1B |
119.5 |
246.5 |
C3B |
S7B |
N9B |
H9B1 |
180.0 |
150.0 |
C3B |
S7B |
N9B |
H9B2 |
300.0 |
330.0 |
C2B |
C3B |
C4B |
S7B |
178.9 |
180.0 |
C4B |
C3B |
C2B |
H2B |
179.2 |
180.0 |
C4B |
C3B |
S7B |
O8B |
358.6 |
156.5 |
C4B |
C3B |
S7B |
N9B |
240.5 |
270.0 |
C4B |
C3B |
S7B |
O1B |
121.1 |
23.5 |
C3B |
C4B |
C5B |
C6B |
0.6 |
359.7 |
C5B |
C4B |
C3B |
H4B |
180.0 |
180.0 |
C3B |
C4B |
C5B |
H5B |
180.6 |
180.0 |
O8B |
S7B |
C3B |
C4B |
358.6 |
156.5 |
C3B |
S7B |
O8B |
N9B |
242.7 |
114.1 |
C3B |
S7B |
O8B |
O1B |
117.8 |
237.0 |
N9B |
S7B |
O8B |
O1B |
235.0 |
122.9 |
O8B |
S7B |
N9B |
H9B1 |
63.7 |
263.6 |
O8B |
S7B |
N9B |
H9B2 |
183.6 |
83.6 |
N9B |
S7B |
C3B |
C4B |
240.5 |
270.0 |
C3B |
S7B |
N9B |
O8B |
116.4 |
246.4 |
C3B |
S7B |
N9B |
O1B |
243.2 |
113.5 |
O8B |
S7B |
N9B |
O1B |
126.8 |
227.1 |
H9B1 |
N9B |
S7B |
H9B2 |
240.0 |
180.1 |
O1B |
S7B |
C3B |
C4B |
121.1 |
23.5 |
C3B |
S7B |
O1B |
O8B |
242.1 |
123.0 |
C3B |
S7B |
O1B |
N9B |
117.8 |
245.9 |
O8B |
S7B |
O1B |
N9B |
235.7 |
122.9 |
O1B |
S7B |
N9B |
H9B1 |
296.9 |
36.5 |
O1B |
S7B |
N9B |
H9B2 |
56.8 |
216.5 |
C1B |
C6B |
C5B |
C4B |
359.0 |
0.6 |
C3B |
C4B |
C5B |
H4B |
180.0 |
180.0 |
C4B |
C5B |
C6B |
H6B |
179.0 |
180.3 |
C6B |
C5B |
C4B |
H5B |
180.0 |
179.7 |
C1B |
C6B |
C5B |
H6B |
180.0 |
180.3 |
C6B |
C5B |
C4B |
H4B |
180.5 |
179.7 |
C4B |
C5B |
C6B |
H5B |
180.0 |
180.3 |
C4 |
C5 |
C6 |
N1 |
358.8 |
0.5 |
N1 |
C6 |
C5 |
C8 |
175.8 |
180.3 |
C5 |
C6 |
N1 |
H6 |
180.0 |
179.7 |
C4 |
C5 |
C6 |
C8 |
182.9 |
180.2 |
N1 |
C6 |
C5 |
H6 |
180.0 |
180.3 |
C6 |
C5 |
C8 |
N9 |
86.6 |
320.2 |
C4 |
C5 |
C8 |
C6 |
177.1 |
179.8 |
C8 |
C5 |
C6 |
H6 |
355.9 |
360.0 |
H7A1 |
C7A |
N6A |
C3A |
180.0 |
300.0 |
N6A |
C7A |
H7A1 |
H7A2 |
120.0 |
120.0 |
N6A |
C7A |
H7A1 |
H7A3 |
240.0 |
240.0 |
H7A1 |
C7A |
N6A |
H6A |
301.5 |
120.0 |
H7A2 |
C7A |
H7A1 |
H7A3 |
119.9 |
120.0 |
H7A2 |
C7A |
N6A |
C3A |
300.0 |
60.0 |
N6A |
C7A |
H7A2 |
H7A1 |
240.0 |
240.0 |
N6A |
C7A |
H7A2 |
H7A3 |
120.0 |
120.0 |
H7A2 |
C7A |
N6A |
H6A |
61.5 |
240.0 |
H7A1 |
C7A |
H7A2 |
H7A3 |
240.1 |
240.0 |
H7A3 |
C7A |
N6A |
C3A |
60.0 |
179.9 |
N6A |
C7A |
H7A3 |
H7A1 |
120.0 |
120.0 |
N6A |
C7A |
H7A3 |
H7A2 |
240.0 |
240.0 |
H7A3 |
C7A |
N6A |
H6A |
181.5 |
360.0 |
H7A1 |
C7A |
H7A3 |
H7A2 |
120.0 |
120.0 |
C7A |
N6A |
H6A |
C3A |
230.5 |
180.0 |
H6A |
N6A |
C7A |
H7A1 |
301.5 |
120.0 |
H6A |
N6A |
C7A |
H7A2 |
61.5 |
240.0 |
H6A |
N6A |
C7A |
H7A3 |
181.5 |
360.0 |
H6A |
N6A |
C3A |
N2A |
331.5 |
180.0 |
H6A |
N6A |
C3A |
S4A |
152.9 |
359.6 |
H8A1 |
C8A |
C1A |
C5A |
178.0 |
270.0 |
C1A |
C8A |
H8A1 |
H8A2 |
120.0 |
120.0 |
C1A |
C8A |
H8A1 |
H8A3 |
240.0 |
240.0 |
H8A2 |
C8A |
H8A1 |
H8A3 |
120.0 |
120.0 |
H8A2 |
C8A |
C1A |
C5A |
298.0 |
30.0 |
C1A |
C8A |
H8A2 |
H8A1 |
240.0 |
240.0 |
C1A |
C8A |
H8A2 |
H8A3 |
120.0 |
120.0 |
H8A1 |
C8A |
H8A2 |
H8A3 |
240.0 |
240.0 |
H8A3 |
C8A |
C1A |
C5A |
58.0 |
150.0 |
C1A |
C8A |
H8A3 |
H8A1 |
120.0 |
120.0 |
C1A |
C8A |
H8A3 |
H8A2 |
240.0 |
240.0 |
H8A1 |
C8A |
H8A3 |
H8A2 |
120.0 |
120.0 |
H7 |
N7 |
C2 |
N1 |
352.3 |
174.5 |
C2 |
N7 |
H7 |
C1B |
180.0 |
180.0 |
H7 |
N7 |
C1B |
C2B |
345.9 |
326.3 |
H7 |
N7 |
C1B |
C6B |
165.8 |
146.0 |
H2B |
C2B |
C1B |
C6B |
180.4 |
180.2 |
C1B |
C2B |
H2B |
C3B |
180.0 |
180.0 |
H2B |
C2B |
C3B |
S7B |
358.2 |
0.0 |
H2B |
C2B |
C3B |
C4B |
179.2 |
180.0 |
C1B |
C6B |
H6B |
C5B |
180.0 |
179.7 |
H6B |
C6B |
C5B |
H5B |
359.0 |
360.0 |
C3B |
C4B |
H4B |
C5B |
180.0 |
180.0 |
H4B |
C4B |
C5B |
C6B |
180.5 |
179.7 |
H4B |
C4B |
C5B |
H5B |
0.5 |
0.0 |
H9B1 |
N9B |
S7B |
O1B |
296.9 |
36.5 |
S7B |
N9B |
H9B1 |
H9B2 |
120.0 |
179.9 |
H9B2 |
N9B |
S7B |
O1B |
56.8 |
216.5 |
S7B |
N9B |
H9B2 |
H9B1 |
240.0 |
180.1 |
C4B |
C5B |
H5B |
C6B |
180.0 |
179.7 |
H5B |
C5B |
C4B |
H4B |
0.5 |
0.0 |
H5B |
C5B |
C6B |
H6B |
359.0 |
360.0 |
N1 |
C6 |
H6 |
C5 |
180.0 |
179.7 |
H6 |
C6 |
C5 |
C8 |
355.9 |
360.0 |