PDB Chemical Component T39

Ideal Model

Chemical Description

Name 2'-O-METHOXYETHYLENE THYMIDINE 5'-MONOPHOSPHATE
Formula C13 H21 N2 O10 P
Formal charge 0
Molecular weight 396.287 g/mol
Component type RNA LINKING
Nonstandard Parent Id DT

Chemical features

Atom count 47
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Observed leaving atoms OP3 HO3' HOP3
Bond count 48
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-O-(2-methoxyethyl)-5-methyluridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3R,4R,5R)-4-(2-methoxyethoxy)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) COCCO[C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1N2C=C(C)C(=O)NC2=O
SMILES (CACTVS) COCCO[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1N2C=C(C)C(=O)NC2=O
Stereo SMILES (OpenEye) CC1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)OCCOC
InChI descriptor InChI=1S/C13H21N2O10P/c1-7-5-15(13(18)14-11(7)17)12-10(23-4-3-22-2)9(16)8(25-12)6-24-26(19,20)21/h5,8-10,12,16H,3-4,6H2,1-2H3,(H,14,17,18)(H2,19,20,21)/t8-,9-,10-,12-/m1/s1
InChIKey descriptor BLSQXXFKLSKRRX-DNRKLUKYSA-N

Status Information

Last modified 2013-01-10
Created 1998-07-29
Release status REL
Model PDB code 411D
Processing site RCSB