PDB Chemical Component T33
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for T33
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.411 |
1.382 |
C1 |
C6 |
1.404 |
1.383 |
C1 |
C7 |
1.459 |
1.507 |
C2 |
C3 |
1.366 |
1.382 |
C2 |
H2 |
1.103 |
1.081 |
C3 |
I3 |
2.066 |
2.095 |
C3 |
C4 |
1.435 |
1.388 |
C4 |
O4 |
1.394 |
1.358 |
C4 |
C5 |
1.396 |
1.387 |
O4 |
C1' |
1.455 |
1.360 |
C5 |
C6 |
1.375 |
1.381 |
C5 |
H5 |
1.103 |
1.079 |
C6 |
H6 |
1.104 |
1.081 |
C7 |
C8 |
1.512 |
1.529 |
C7 |
H71 |
1.116 |
1.090 |
C7 |
H72 |
1.115 |
1.091 |
C8 |
N8 |
1.460 |
1.469 |
C8 |
C9 |
1.530 |
1.507 |
C8 |
H8 |
1.115 |
1.090 |
N8 |
HN81 |
1.021 |
1.008 |
N8 |
HN82 |
1.019 |
1.010 |
C9 |
O9 |
1.232 |
1.208 |
C9 |
O10 |
1.257 |
1.342 |
O10 |
HO1 |
0.951 |
0.967 |
C1' |
C2' |
1.368 |
1.387 |
C1' |
C6' |
1.491 |
1.387 |
C2' |
C3' |
1.379 |
1.382 |
C2' |
H2' |
1.104 |
1.079 |
C3' |
I3' |
2.203 |
2.094 |
C3' |
C4' |
1.429 |
1.387 |
C4' |
O4' |
1.377 |
1.359 |
C4' |
C5' |
1.437 |
1.387 |
O4' |
HO'4 |
0.950 |
0.967 |
C5' |
C6' |
1.353 |
1.381 |
C5' |
H5' |
1.103 |
1.080 |
C6' |
H6' |
1.103 |
1.080 |
Bond Angles for T33
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
C6 |
113.0 |
120.1 |
C2 |
C1 |
C7 |
115.9 |
119.9 |
C1 |
C2 |
C3 |
124.6 |
120.1 |
C1 |
C2 |
H2 |
119.4 |
120.0 |
C6 |
C1 |
C7 |
131.0 |
120.0 |
C1 |
C6 |
C5 |
124.1 |
120.1 |
C1 |
C6 |
H6 |
119.1 |
119.9 |
C1 |
C7 |
C8 |
130.6 |
109.5 |
C1 |
C7 |
H71 |
104.9 |
109.5 |
C1 |
C7 |
H72 |
104.9 |
109.4 |
C3 |
C2 |
H2 |
116.0 |
119.9 |
C2 |
C3 |
I3 |
115.2 |
120.1 |
C2 |
C3 |
C4 |
121.2 |
119.9 |
I3 |
C3 |
C4 |
123.6 |
120.0 |
C3 |
C4 |
O4 |
114.7 |
120.1 |
C3 |
C4 |
C5 |
114.8 |
119.9 |
O4 |
C4 |
C5 |
130.5 |
120.1 |
C4 |
O4 |
C1' |
127.0 |
106.8 |
C4 |
C5 |
C6 |
122.4 |
119.9 |
C4 |
C5 |
H5 |
119.7 |
120.1 |
O4 |
C1' |
C2' |
106.5 |
120.0 |
O4 |
C1' |
C6' |
124.7 |
120.0 |
C6 |
C5 |
H5 |
117.9 |
120.0 |
C5 |
C6 |
H6 |
116.9 |
119.9 |
C8 |
C7 |
H71 |
104.9 |
109.5 |
C8 |
C7 |
H72 |
104.8 |
109.5 |
C7 |
C8 |
N8 |
114.4 |
109.5 |
C7 |
C8 |
C9 |
106.6 |
109.5 |
C7 |
C8 |
H8 |
110.9 |
109.5 |
H71 |
C7 |
H72 |
104.2 |
109.4 |
N8 |
C8 |
C9 |
116.5 |
109.5 |
N8 |
C8 |
H8 |
99.7 |
109.5 |
C8 |
N8 |
HN81 |
114.3 |
106.8 |
C8 |
N8 |
HN82 |
110.4 |
106.7 |
C9 |
C8 |
H8 |
108.5 |
109.5 |
C8 |
C9 |
O9 |
125.9 |
120.0 |
C8 |
C9 |
O10 |
118.1 |
120.0 |
HN81 |
N8 |
HN82 |
110.4 |
106.6 |
O9 |
C9 |
O10 |
116.0 |
120.0 |
C9 |
O10 |
HO1 |
118.0 |
120.0 |
C2' |
C1' |
C6' |
128.8 |
120.0 |
C1' |
C2' |
C3' |
125.3 |
120.0 |
C1' |
C2' |
H2' |
117.0 |
120.0 |
C1' |
C6' |
C5' |
104.7 |
120.0 |
C1' |
C6' |
H6' |
131.2 |
120.0 |
C3' |
C2' |
H2' |
117.8 |
120.0 |
C2' |
C3' |
I3' |
126.9 |
120.0 |
C2' |
C3' |
C4' |
107.9 |
120.0 |
I3' |
C3' |
C4' |
125.2 |
120.0 |
C3' |
C4' |
O4' |
115.4 |
120.0 |
C3' |
C4' |
C5' |
126.1 |
120.0 |
O4' |
C4' |
C5' |
118.5 |
120.0 |
C4' |
O4' |
HO'4 |
115.4 |
106.9 |
C4' |
C5' |
C6' |
127.3 |
120.0 |
C4' |
C5' |
H5' |
119.8 |
120.0 |
C6' |
C5' |
H5' |
112.9 |
120.0 |
C5' |
C6' |
H6' |
124.1 |
120.0 |
Torsion Angles for T33
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
C1 |
C2 |
C7 |
183.2 |
179.8 |
C2 |
C1 |
C6 |
C5 |
359.7 |
0.2 |
C2 |
C1 |
C6 |
H6 |
179.7 |
180.3 |
C2 |
C1 |
C7 |
C8 |
115.8 |
269.8 |
C2 |
C1 |
C7 |
H71 |
241.0 |
149.7 |
C2 |
C1 |
C7 |
H72 |
350.5 |
29.8 |
C3 |
C2 |
C1 |
H2 |
180.0 |
179.5 |
C1 |
C2 |
C3 |
I3 |
181.4 |
180.2 |
C1 |
C2 |
C3 |
C4 |
358.8 |
0.5 |
C2 |
C1 |
C6 |
C7 |
176.1 |
180.2 |
C6 |
C1 |
C2 |
C3 |
0.3 |
359.5 |
C6 |
C1 |
C2 |
H2 |
180.3 |
180.0 |
C6 |
C1 |
C7 |
C8 |
291.8 |
90.0 |
C6 |
C1 |
C7 |
H71 |
57.1 |
329.9 |
C6 |
C1 |
C7 |
H72 |
166.6 |
210.0 |
C4 |
C5 |
C6 |
C1 |
1.4 |
0.1 |
C1 |
C6 |
C5 |
H5 |
181.4 |
180.0 |
C5 |
C6 |
C1 |
H6 |
180.0 |
180.0 |
C2 |
C1 |
C7 |
C6 |
183.9 |
179.8 |
C7 |
C1 |
C2 |
C3 |
177.0 |
179.7 |
C7 |
C1 |
C2 |
H2 |
357.0 |
0.2 |
C7 |
C1 |
C6 |
C5 |
183.6 |
180.0 |
C7 |
C1 |
C6 |
H6 |
3.6 |
0.1 |
C8 |
C7 |
C1 |
H71 |
234.7 |
120.1 |
C8 |
C7 |
C1 |
H72 |
125.3 |
240.0 |
C1 |
C7 |
C8 |
N8 |
339.4 |
300.0 |
C1 |
C7 |
C8 |
C9 |
209.1 |
180.0 |
C1 |
C7 |
C8 |
H8 |
91.2 |
60.0 |
H71 |
C7 |
C1 |
H72 |
250.6 |
119.9 |
C3 |
C2 |
C1 |
C6 |
0.3 |
359.5 |
C3 |
C2 |
C1 |
C7 |
177.0 |
179.7 |
C1 |
C2 |
C3 |
H2 |
180.0 |
180.5 |
I3 |
C3 |
C2 |
C4 |
182.6 |
179.7 |
C2 |
C3 |
C4 |
O4 |
180.5 |
179.7 |
C2 |
C3 |
C4 |
C5 |
2.1 |
359.8 |
H2 |
C2 |
C1 |
C6 |
180.3 |
180.0 |
H2 |
C2 |
C1 |
C7 |
357.0 |
0.2 |
C1 |
C2 |
H2 |
C3 |
180.0 |
179.5 |
H2 |
C2 |
C3 |
I3 |
1.4 |
359.7 |
H2 |
C2 |
C3 |
C4 |
178.8 |
180.0 |
I3 |
C3 |
C2 |
H2 |
1.4 |
359.7 |
C2 |
C3 |
I3 |
C4 |
177.3 |
180.3 |
I3 |
C3 |
C4 |
O4 |
357.7 |
360.0 |
I3 |
C3 |
C4 |
C5 |
179.3 |
180.1 |
C4 |
C3 |
C2 |
H2 |
178.8 |
180.0 |
C2 |
C3 |
C4 |
I3 |
182.8 |
179.7 |
O4 |
C4 |
C3 |
C5 |
178.4 |
179.9 |
C3 |
C4 |
O4 |
C1' |
93.8 |
174.4 |
C3 |
C4 |
C5 |
C6 |
357.8 |
359.9 |
C3 |
C4 |
C5 |
H5 |
177.8 |
180.0 |
C3 |
C4 |
O4 |
C5 |
181.9 |
180.1 |
O4 |
C4 |
C5 |
C6 |
179.7 |
180.0 |
O4 |
C4 |
C5 |
H5 |
359.7 |
0.1 |
C4 |
O4 |
C1' |
C2' |
19.2 |
274.6 |
C4 |
O4 |
C1' |
C6' |
197.5 |
94.9 |
C1 |
C6 |
C5 |
C4 |
1.4 |
0.1 |
C3 |
C4 |
C5 |
O4 |
178.1 |
179.9 |
C5 |
C4 |
O4 |
C1' |
272.0 |
354.3 |
C6 |
C5 |
C4 |
H5 |
180.0 |
179.9 |
C4 |
C5 |
C6 |
H6 |
181.4 |
180.0 |
C1' |
O4 |
C4 |
C5 |
272.0 |
354.3 |
C2' |
C1' |
O4 |
C6' |
181.6 |
179.7 |
O4 |
C1' |
C2' |
C3' |
178.7 |
179.7 |
O4 |
C1' |
C2' |
H2' |
358.7 |
0.3 |
O4 |
C1' |
C6' |
C5' |
180.6 |
180.0 |
O4 |
C1' |
C6' |
H6' |
0.6 |
359.9 |
C5 |
C6 |
C1 |
C7 |
183.6 |
180.0 |
C1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
C4 |
C5 |
C6 |
H5 |
180.0 |
180.1 |
C4 |
C5 |
H5 |
C6 |
180.0 |
179.9 |
H5 |
C5 |
C6 |
H6 |
1.4 |
359.9 |
H6 |
C6 |
C1 |
C7 |
3.6 |
0.1 |
C1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
H6 |
C6 |
C5 |
H5 |
1.4 |
359.9 |
C1 |
C7 |
C8 |
H71 |
125.3 |
239.9 |
C1 |
C7 |
C8 |
H72 |
234.7 |
120.0 |
H71 |
C7 |
C8 |
H72 |
109.4 |
240.0 |
N8 |
C8 |
C7 |
C9 |
130.3 |
120.0 |
N8 |
C8 |
C7 |
H8 |
248.2 |
240.0 |
C7 |
C8 |
N8 |
HN81 |
180.0 |
300.0 |
C7 |
C8 |
N8 |
HN82 |
54.8 |
53.7 |
C9 |
C8 |
C7 |
H8 |
118.0 |
120.0 |
C7 |
C8 |
C9 |
O9 |
119.1 |
90.1 |
C7 |
C8 |
C9 |
O10 |
300.1 |
270.0 |
C1 |
C7 |
H71 |
C8 |
219.9 |
120.1 |
C1 |
C7 |
H71 |
H72 |
110.0 |
240.0 |
C8 |
C7 |
H71 |
H72 |
250.1 |
120.0 |
H71 |
C7 |
C8 |
N8 |
214.1 |
60.0 |
H71 |
C7 |
C8 |
C9 |
83.8 |
300.1 |
H71 |
C7 |
C8 |
H8 |
325.9 |
180.1 |
C1 |
C7 |
H72 |
C8 |
140.1 |
240.0 |
C1 |
C7 |
H72 |
H71 |
250.0 |
120.0 |
C8 |
C7 |
H72 |
H71 |
109.9 |
240.0 |
H72 |
C7 |
C8 |
N8 |
104.7 |
180.0 |
H72 |
C7 |
C8 |
C9 |
334.4 |
60.0 |
H72 |
C7 |
C8 |
H8 |
216.5 |
300.0 |
N8 |
C8 |
C7 |
H71 |
214.1 |
60.0 |
N8 |
C8 |
C7 |
H72 |
104.7 |
180.0 |
C7 |
C8 |
N8 |
C9 |
234.8 |
240.0 |
C7 |
C8 |
N8 |
H8 |
118.4 |
120.0 |
C9 |
C8 |
N8 |
H8 |
243.6 |
240.0 |
N8 |
C8 |
C9 |
O9 |
350.0 |
330.1 |
N8 |
C8 |
C9 |
O10 |
171.0 |
150.0 |
HN81 |
N8 |
C8 |
HN82 |
125.2 |
246.3 |
C9 |
C8 |
C7 |
H71 |
83.8 |
300.1 |
C9 |
C8 |
C7 |
H72 |
334.4 |
60.0 |
C7 |
C8 |
C9 |
N8 |
129.1 |
120.0 |
C7 |
C8 |
C9 |
H8 |
240.5 |
240.0 |
N8 |
C8 |
C9 |
H8 |
111.4 |
120.0 |
C9 |
C8 |
N8 |
HN81 |
305.2 |
60.0 |
C9 |
C8 |
N8 |
HN82 |
180.0 |
173.7 |
O9 |
C9 |
C8 |
O10 |
179.0 |
180.1 |
C8 |
C9 |
O10 |
HO1 |
180.0 |
180.0 |
H8 |
C8 |
C7 |
H71 |
325.9 |
180.1 |
H8 |
C8 |
C7 |
H72 |
216.5 |
300.0 |
C7 |
C8 |
H8 |
N8 |
239.1 |
240.0 |
C7 |
C8 |
H8 |
C9 |
116.8 |
120.0 |
N8 |
C8 |
H8 |
C9 |
237.7 |
240.0 |
H8 |
C8 |
N8 |
HN81 |
61.6 |
180.0 |
H8 |
C8 |
N8 |
HN82 |
296.4 |
293.7 |
H8 |
C8 |
C9 |
O9 |
238.6 |
210.1 |
H8 |
C8 |
C9 |
O10 |
59.6 |
30.0 |
HN81 |
N8 |
C8 |
C9 |
305.2 |
60.0 |
HN81 |
N8 |
C8 |
H8 |
61.6 |
180.0 |
C8 |
N8 |
HN81 |
HN82 |
234.8 |
113.8 |
HN82 |
N8 |
C8 |
C9 |
180.0 |
173.7 |
HN82 |
N8 |
C8 |
H8 |
296.4 |
293.7 |
C8 |
N8 |
HN82 |
HN81 |
127.4 |
246.2 |
O9 |
C9 |
C8 |
H8 |
238.6 |
210.1 |
C8 |
C9 |
O9 |
O10 |
181.0 |
179.9 |
O9 |
C9 |
O10 |
HO1 |
1.0 |
359.9 |
O10 |
C9 |
C8 |
H8 |
59.6 |
30.0 |
C8 |
C9 |
O10 |
O9 |
179.1 |
180.1 |
O4 |
C1' |
C2' |
C6' |
178.3 |
180.3 |
C2' |
C1' |
C6' |
C5' |
358.6 |
0.3 |
C2' |
C1' |
C6' |
H6' |
178.6 |
180.2 |
C3' |
C2' |
C1' |
H2' |
180.0 |
179.4 |
C1' |
C2' |
C3' |
I3' |
178.7 |
180.2 |
C1' |
C2' |
C3' |
C4' |
1.3 |
0.6 |
O4 |
C1' |
C6' |
C2' |
182.0 |
179.7 |
C6' |
C1' |
C2' |
C3' |
0.5 |
359.4 |
C6' |
C1' |
C2' |
H2' |
180.4 |
180.0 |
C4' |
C5' |
C6' |
C1' |
0.5 |
360.0 |
C1' |
C6' |
C5' |
H5' |
180.5 |
180.0 |
C5' |
C6' |
C1' |
H6' |
180.0 |
180.1 |
C3' |
C2' |
C1' |
C6' |
0.5 |
359.4 |
C1' |
C2' |
C3' |
H2' |
180.0 |
180.6 |
I3' |
C3' |
C2' |
C4' |
177.4 |
179.7 |
C2' |
C3' |
C4' |
O4' |
179.8 |
179.7 |
C2' |
C3' |
C4' |
C5' |
357.8 |
359.7 |
H2' |
C2' |
C1' |
C6' |
180.4 |
180.0 |
C1' |
C2' |
H2' |
C3' |
180.0 |
179.4 |
H2' |
C2' |
C3' |
I3' |
358.8 |
359.6 |
H2' |
C2' |
C3' |
C4' |
181.3 |
180.0 |
I3' |
C3' |
C2' |
H2' |
358.8 |
359.6 |
C2' |
C3' |
I3' |
C4' |
183.0 |
180.3 |
I3' |
C3' |
C4' |
O4' |
2.3 |
360.0 |
I3' |
C3' |
C4' |
C5' |
180.4 |
180.0 |
C4' |
C3' |
C2' |
H2' |
181.3 |
180.0 |
C2' |
C3' |
C4' |
I3' |
177.5 |
179.7 |
O4' |
C4' |
C3' |
C5' |
181.9 |
179.9 |
C3' |
C4' |
O4' |
HO'4 |
180.1 |
270.1 |
C3' |
C4' |
C5' |
C6' |
1.3 |
0.0 |
C3' |
C4' |
C5' |
H5' |
181.3 |
180.0 |
C3' |
C4' |
O4' |
C5' |
178.2 |
180.1 |
O4' |
C4' |
C5' |
C6' |
179.3 |
180.1 |
O4' |
C4' |
C5' |
H5' |
359.3 |
0.0 |
C1' |
C6' |
C5' |
C4' |
0.5 |
360.0 |
C3' |
C4' |
C5' |
O4' |
182.0 |
179.9 |
C5' |
C4' |
O4' |
HO'4 |
1.8 |
90.0 |
C6' |
C5' |
C4' |
H5' |
180.0 |
180.0 |
C4' |
C5' |
C6' |
H6' |
180.5 |
180.0 |
HO'4 |
O4' |
C4' |
C5' |
1.8 |
90.0 |
C1' |
C6' |
C5' |
H6' |
180.0 |
179.9 |
C4' |
C5' |
C6' |
H5' |
180.0 |
180.0 |
C4' |
C5' |
H5' |
C6' |
180.0 |
180.0 |
H5' |
C5' |
C6' |
H6' |
0.5 |
0.1 |
C1' |
C6' |
H6' |
C5' |
180.0 |
180.1 |
H6' |
C6' |
C5' |
H5' |
0.5 |
0.1 |