PDB Chemical Component T33

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for T33

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.411 1.382
C1 C6 1.404 1.383
C1 C7 1.459 1.507
C2 C3 1.366 1.382
C2 H2 1.103 1.081
C3 I3 2.066 2.095
C3 C4 1.435 1.388
C4 O4 1.394 1.358
C4 C5 1.396 1.387
O4 C1' 1.455 1.360
C5 C6 1.375 1.381
C5 H5 1.103 1.079
C6 H6 1.104 1.081
C7 C8 1.512 1.529
C7 H71 1.116 1.090
C7 H72 1.115 1.091
C8 N8 1.460 1.469
C8 C9 1.530 1.507
C8 H8 1.115 1.090
N8 HN81 1.021 1.008
N8 HN82 1.019 1.010
C9 O9 1.232 1.208
C9 O10 1.257 1.342
O10 HO1 0.951 0.967
C1' C2' 1.368 1.387
C1' C6' 1.491 1.387
C2' C3' 1.379 1.382
C2' H2' 1.104 1.079
C3' I3' 2.203 2.094
C3' C4' 1.429 1.387
C4' O4' 1.377 1.359
C4' C5' 1.437 1.387
O4' HO'4 0.950 0.967
C5' C6' 1.353 1.381
C5' H5' 1.103 1.080
C6' H6' 1.103 1.080

Bond Angles for T33

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 C6 113.0 120.1
C2 C1 C7 115.9 119.9
C1 C2 C3 124.6 120.1
C1 C2 H2 119.4 120.0
C6 C1 C7 131.0 120.0
C1 C6 C5 124.1 120.1
C1 C6 H6 119.1 119.9
C1 C7 C8 130.6 109.5
C1 C7 H71 104.9 109.5
C1 C7 H72 104.9 109.4
C3 C2 H2 116.0 119.9
C2 C3 I3 115.2 120.1
C2 C3 C4 121.2 119.9
I3 C3 C4 123.6 120.0
C3 C4 O4 114.7 120.1
C3 C4 C5 114.8 119.9
O4 C4 C5 130.5 120.1
C4 O4 C1' 127.0 106.8
C4 C5 C6 122.4 119.9
C4 C5 H5 119.7 120.1
O4 C1' C2' 106.5 120.0
O4 C1' C6' 124.7 120.0
C6 C5 H5 117.9 120.0
C5 C6 H6 116.9 119.9
C8 C7 H71 104.9 109.5
C8 C7 H72 104.8 109.5
C7 C8 N8 114.4 109.5
C7 C8 C9 106.6 109.5
C7 C8 H8 110.9 109.5
H71 C7 H72 104.2 109.4
N8 C8 C9 116.5 109.5
N8 C8 H8 99.7 109.5
C8 N8 HN81 114.3 106.8
C8 N8 HN82 110.4 106.7
C9 C8 H8 108.5 109.5
C8 C9 O9 125.9 120.0
C8 C9 O10 118.1 120.0
HN81 N8 HN82 110.4 106.6
O9 C9 O10 116.0 120.0
C9 O10 HO1 118.0 120.0
C2' C1' C6' 128.8 120.0
C1' C2' C3' 125.3 120.0
C1' C2' H2' 117.0 120.0
C1' C6' C5' 104.7 120.0
C1' C6' H6' 131.2 120.0
C3' C2' H2' 117.8 120.0
C2' C3' I3' 126.9 120.0
C2' C3' C4' 107.9 120.0
I3' C3' C4' 125.2 120.0
C3' C4' O4' 115.4 120.0
C3' C4' C5' 126.1 120.0
O4' C4' C5' 118.5 120.0
C4' O4' HO'4 115.4 106.9
C4' C5' C6' 127.3 120.0
C4' C5' H5' 119.8 120.0
C6' C5' H5' 112.9 120.0
C5' C6' H6' 124.1 120.0

Torsion Angles for T33

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 C1 C2 C7 183.2 179.8
C2 C1 C6 C5 359.7 0.2
C2 C1 C6 H6 179.7 180.3
C2 C1 C7 C8 115.8 269.8
C2 C1 C7 H71 241.0 149.7
C2 C1 C7 H72 350.5 29.8
C3 C2 C1 H2 180.0 179.5
C1 C2 C3 I3 181.4 180.2
C1 C2 C3 C4 358.8 0.5
C2 C1 C6 C7 176.1 180.2
C6 C1 C2 C3 0.3 359.5
C6 C1 C2 H2 180.3 180.0
C6 C1 C7 C8 291.8 90.0
C6 C1 C7 H71 57.1 329.9
C6 C1 C7 H72 166.6 210.0
C4 C5 C6 C1 1.4 0.1
C1 C6 C5 H5 181.4 180.0
C5 C6 C1 H6 180.0 180.0
C2 C1 C7 C6 183.9 179.8
C7 C1 C2 C3 177.0 179.7
C7 C1 C2 H2 357.0 0.2
C7 C1 C6 C5 183.6 180.0
C7 C1 C6 H6 3.6 0.1
C8 C7 C1 H71 234.7 120.1
C8 C7 C1 H72 125.3 240.0
C1 C7 C8 N8 339.4 300.0
C1 C7 C8 C9 209.1 180.0
C1 C7 C8 H8 91.2 60.0
H71 C7 C1 H72 250.6 119.9
C3 C2 C1 C6 0.3 359.5
C3 C2 C1 C7 177.0 179.7
C1 C2 C3 H2 180.0 180.5
I3 C3 C2 C4 182.6 179.7
C2 C3 C4 O4 180.5 179.7
C2 C3 C4 C5 2.1 359.8
H2 C2 C1 C6 180.3 180.0
H2 C2 C1 C7 357.0 0.2
C1 C2 H2 C3 180.0 179.5
H2 C2 C3 I3 1.4 359.7
H2 C2 C3 C4 178.8 180.0
I3 C3 C2 H2 1.4 359.7
C2 C3 I3 C4 177.3 180.3
I3 C3 C4 O4 357.7 360.0
I3 C3 C4 C5 179.3 180.1
C4 C3 C2 H2 178.8 180.0
C2 C3 C4 I3 182.8 179.7
O4 C4 C3 C5 178.4 179.9
C3 C4 O4 C1' 93.8 174.4
C3 C4 C5 C6 357.8 359.9
C3 C4 C5 H5 177.8 180.0
C3 C4 O4 C5 181.9 180.1
O4 C4 C5 C6 179.7 180.0
O4 C4 C5 H5 359.7 0.1
C4 O4 C1' C2' 19.2 274.6
C4 O4 C1' C6' 197.5 94.9
C1 C6 C5 C4 1.4 0.1
C3 C4 C5 O4 178.1 179.9
C5 C4 O4 C1' 272.0 354.3
C6 C5 C4 H5 180.0 179.9
C4 C5 C6 H6 181.4 180.0
C1' O4 C4 C5 272.0 354.3
C2' C1' O4 C6' 181.6 179.7
O4 C1' C2' C3' 178.7 179.7
O4 C1' C2' H2' 358.7 0.3
O4 C1' C6' C5' 180.6 180.0
O4 C1' C6' H6' 0.6 359.9
C5 C6 C1 C7 183.6 180.0
C1 C6 C5 H6 180.0 180.0
C4 C5 C6 H5 180.0 180.1
C4 C5 H5 C6 180.0 179.9
H5 C5 C6 H6 1.4 359.9
H6 C6 C1 C7 3.6 0.1
C1 C6 H6 C5 180.0 180.0
H6 C6 C5 H5 1.4 359.9
C1 C7 C8 H71 125.3 239.9
C1 C7 C8 H72 234.7 120.0
H71 C7 C8 H72 109.4 240.0
N8 C8 C7 C9 130.3 120.0
N8 C8 C7 H8 248.2 240.0
C7 C8 N8 HN81 180.0 300.0
C7 C8 N8 HN82 54.8 53.7
C9 C8 C7 H8 118.0 120.0
C7 C8 C9 O9 119.1 90.1
C7 C8 C9 O10 300.1 270.0
C1 C7 H71 C8 219.9 120.1
C1 C7 H71 H72 110.0 240.0
C8 C7 H71 H72 250.1 120.0
H71 C7 C8 N8 214.1 60.0
H71 C7 C8 C9 83.8 300.1
H71 C7 C8 H8 325.9 180.1
C1 C7 H72 C8 140.1 240.0
C1 C7 H72 H71 250.0 120.0
C8 C7 H72 H71 109.9 240.0
H72 C7 C8 N8 104.7 180.0
H72 C7 C8 C9 334.4 60.0
H72 C7 C8 H8 216.5 300.0
N8 C8 C7 H71 214.1 60.0
N8 C8 C7 H72 104.7 180.0
C7 C8 N8 C9 234.8 240.0
C7 C8 N8 H8 118.4 120.0
C9 C8 N8 H8 243.6 240.0
N8 C8 C9 O9 350.0 330.1
N8 C8 C9 O10 171.0 150.0
HN81 N8 C8 HN82 125.2 246.3
C9 C8 C7 H71 83.8 300.1
C9 C8 C7 H72 334.4 60.0
C7 C8 C9 N8 129.1 120.0
C7 C8 C9 H8 240.5 240.0
N8 C8 C9 H8 111.4 120.0
C9 C8 N8 HN81 305.2 60.0
C9 C8 N8 HN82 180.0 173.7
O9 C9 C8 O10 179.0 180.1
C8 C9 O10 HO1 180.0 180.0
H8 C8 C7 H71 325.9 180.1
H8 C8 C7 H72 216.5 300.0
C7 C8 H8 N8 239.1 240.0
C7 C8 H8 C9 116.8 120.0
N8 C8 H8 C9 237.7 240.0
H8 C8 N8 HN81 61.6 180.0
H8 C8 N8 HN82 296.4 293.7
H8 C8 C9 O9 238.6 210.1
H8 C8 C9 O10 59.6 30.0
HN81 N8 C8 C9 305.2 60.0
HN81 N8 C8 H8 61.6 180.0
C8 N8 HN81 HN82 234.8 113.8
HN82 N8 C8 C9 180.0 173.7
HN82 N8 C8 H8 296.4 293.7
C8 N8 HN82 HN81 127.4 246.2
O9 C9 C8 H8 238.6 210.1
C8 C9 O9 O10 181.0 179.9
O9 C9 O10 HO1 1.0 359.9
O10 C9 C8 H8 59.6 30.0
C8 C9 O10 O9 179.1 180.1
O4 C1' C2' C6' 178.3 180.3
C2' C1' C6' C5' 358.6 0.3
C2' C1' C6' H6' 178.6 180.2
C3' C2' C1' H2' 180.0 179.4
C1' C2' C3' I3' 178.7 180.2
C1' C2' C3' C4' 1.3 0.6
O4 C1' C6' C2' 182.0 179.7
C6' C1' C2' C3' 0.5 359.4
C6' C1' C2' H2' 180.4 180.0
C4' C5' C6' C1' 0.5 360.0
C1' C6' C5' H5' 180.5 180.0
C5' C6' C1' H6' 180.0 180.1
C3' C2' C1' C6' 0.5 359.4
C1' C2' C3' H2' 180.0 180.6
I3' C3' C2' C4' 177.4 179.7
C2' C3' C4' O4' 179.8 179.7
C2' C3' C4' C5' 357.8 359.7
H2' C2' C1' C6' 180.4 180.0
C1' C2' H2' C3' 180.0 179.4
H2' C2' C3' I3' 358.8 359.6
H2' C2' C3' C4' 181.3 180.0
I3' C3' C2' H2' 358.8 359.6
C2' C3' I3' C4' 183.0 180.3
I3' C3' C4' O4' 2.3 360.0
I3' C3' C4' C5' 180.4 180.0
C4' C3' C2' H2' 181.3 180.0
C2' C3' C4' I3' 177.5 179.7
O4' C4' C3' C5' 181.9 179.9
C3' C4' O4' HO'4 180.1 270.1
C3' C4' C5' C6' 1.3 0.0
C3' C4' C5' H5' 181.3 180.0
C3' C4' O4' C5' 178.2 180.1
O4' C4' C5' C6' 179.3 180.1
O4' C4' C5' H5' 359.3 0.0
C1' C6' C5' C4' 0.5 360.0
C3' C4' C5' O4' 182.0 179.9
C5' C4' O4' HO'4 1.8 90.0
C6' C5' C4' H5' 180.0 180.0
C4' C5' C6' H6' 180.5 180.0
HO'4 O4' C4' C5' 1.8 90.0
C1' C6' C5' H6' 180.0 179.9
C4' C5' C6' H5' 180.0 180.0
C4' C5' H5' C6' 180.0 180.0
H5' C5' C6' H6' 0.5 0.1
C1' C6' H6' C5' 180.0 180.1
H6' C6' C5' H5' 0.5 0.1