PDB Chemical Component T2Y
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for T2Y
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C |
1.515 |
1.507 |
| O |
C1 |
1.232 |
1.213 |
| C1 |
N |
1.326 |
1.348 |
| N |
C2 |
1.451 |
1.466 |
| C2 |
C3 |
1.506 |
1.507 |
| C3 |
C4 |
1.383 |
1.382 |
| C5 |
C4 |
1.397 |
1.383 |
| C6 |
C5 |
1.363 |
1.384 |
| O1 |
C6 |
1.374 |
1.365 |
| C7 |
O1 |
1.429 |
1.440 |
| O2 |
C7 |
1.427 |
1.440 |
| C8 |
O2 |
1.375 |
1.365 |
| C8 |
C6 |
1.376 |
1.393 |
| C9 |
C8 |
1.366 |
1.386 |
| C3 |
C9 |
1.398 |
1.382 |
| C4 |
H5 |
1.080 |
1.080 |
| C5 |
H6 |
1.080 |
1.080 |
| C7 |
H7 |
1.100 |
1.090 |
| C7 |
H8 |
1.099 |
1.090 |
| N |
H2 |
1.000 |
0.970 |
| C |
H |
1.100 |
1.090 |
| C |
H1 |
1.099 |
1.091 |
| C |
H10 |
1.100 |
1.090 |
| C2 |
H4 |
1.100 |
1.091 |
| C2 |
H3 |
1.100 |
1.090 |
| C9 |
H9 |
1.080 |
1.080 |
Bond Angles for T2Y
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
C |
H |
109.5 |
109.5 |
| C1 |
C |
H1 |
109.5 |
109.4 |
| C1 |
C |
H10 |
109.4 |
109.5 |
| C1 |
N |
C2 |
122.3 |
120.0 |
| C1 |
N |
H2 |
118.9 |
120.0 |
| N |
C2 |
C3 |
110.6 |
109.5 |
| C2 |
N |
H2 |
118.9 |
120.0 |
| N |
C2 |
H4 |
109.2 |
109.4 |
| N |
C2 |
H3 |
109.2 |
109.5 |
| C2 |
C3 |
C9 |
119.9 |
119.9 |
| C3 |
C2 |
H4 |
109.2 |
109.5 |
| C3 |
C2 |
H3 |
109.2 |
109.5 |
| C3 |
C4 |
H5 |
118.9 |
119.9 |
| C5 |
C4 |
H5 |
118.8 |
119.9 |
| C6 |
C5 |
H6 |
121.8 |
120.0 |
| O1 |
C7 |
H7 |
109.7 |
110.5 |
| O1 |
C7 |
H8 |
109.7 |
110.5 |
| O2 |
C7 |
H7 |
109.7 |
110.6 |
| O2 |
C7 |
H8 |
109.7 |
110.7 |
| C9 |
C8 |
O2 |
127.7 |
131.5 |
| C3 |
C9 |
H9 |
121.3 |
120.0 |
| H7 |
C7 |
H8 |
109.4 |
110.5 |
| H |
C |
H1 |
109.5 |
109.5 |
| H |
C |
H10 |
109.5 |
109.5 |
| H1 |
C |
H10 |
109.5 |
109.4 |
| H4 |
C2 |
H3 |
109.4 |
109.5 |
Torsion Angles for T2Y
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C |
C1 |
N |
C2 |
159.1 |
180.0 |
| C |
C1 |
N |
H2 |
339.1 |
360.0 |
| H |
C |
C1 |
H1 |
240.0 |
240.0 |
| H |
C |
C1 |
H10 |
120.0 |
120.1 |
| H1 |
C |
C1 |
H10 |
240.0 |
240.1 |
| O |
C1 |
C |
H |
360.0 |
90.0 |
| O |
C1 |
C |
H1 |
120.0 |
210.0 |
| O |
C1 |
C |
H10 |
240.0 |
329.9 |
| O |
C1 |
N |
C2 |
337.9 |
0.1 |
| O |
C1 |
N |
H2 |
157.9 |
180.0 |
| C1 |
N |
C2 |
C3 |
293.9 |
180.0 |
| C2 |
N |
C1 |
H2 |
180.0 |
180.0 |
| C1 |
N |
C2 |
H4 |
54.1 |
300.0 |
| C1 |
N |
C2 |
H3 |
173.7 |
60.0 |
| C1 |
N |
C2 |
H2 |
180.0 |
180.0 |
| N |
C2 |
C3 |
C9 |
131.8 |
270.3 |
| C3 |
C2 |
N |
H4 |
239.8 |
240.0 |
| C3 |
C2 |
N |
H3 |
120.2 |
120.1 |
| H4 |
C2 |
N |
H3 |
240.4 |
240.0 |
| C3 |
C2 |
N |
H2 |
113.9 |
0.0 |
| N |
C2 |
C3 |
H4 |
120.2 |
119.9 |
| N |
C2 |
C3 |
H3 |
239.8 |
240.0 |
| C2 |
C3 |
C4 |
H5 |
359.4 |
0.0 |
| C2 |
C3 |
C9 |
H9 |
0.4 |
360.0 |
| H4 |
C2 |
C3 |
H3 |
119.6 |
120.0 |
| C5 |
C4 |
C3 |
H5 |
180.0 |
179.7 |
| C3 |
C4 |
C5 |
H5 |
180.0 |
180.3 |
| C6 |
C5 |
C4 |
H5 |
179.8 |
180.0 |
| O1 |
C6 |
C5 |
H6 |
0.3 |
0.1 |
| O2 |
C7 |
O1 |
H7 |
240.1 |
241.4 |
| O2 |
C7 |
O1 |
H8 |
119.9 |
118.7 |
| H7 |
C7 |
O1 |
H8 |
239.7 |
237.3 |
| O1 |
C7 |
O2 |
H7 |
119.9 |
118.5 |
| O1 |
C7 |
O2 |
H8 |
240.1 |
241.4 |
| H7 |
C7 |
O2 |
H8 |
120.3 |
122.8 |
| C8 |
O2 |
C7 |
H7 |
235.3 |
214.3 |
| C8 |
O2 |
C7 |
H8 |
115.0 |
91.5 |
| C8 |
C6 |
C5 |
H6 |
179.6 |
180.0 |
| C9 |
C3 |
C2 |
H4 |
11.6 |
150.4 |
| C9 |
C3 |
C2 |
H3 |
252.0 |
30.4 |
| C9 |
C3 |
C4 |
H5 |
181.0 |
179.7 |
| C3 |
C9 |
C8 |
O2 |
180.2 |
179.7 |
| H6 |
C5 |
C4 |
H5 |
359.8 |
360.0 |
| O1 |
C7 |
H7 |
H8 |
120.4 |
122.7 |
| O2 |
C7 |
H7 |
H8 |
239.5 |
237.0 |
| O1 |
C7 |
H8 |
H7 |
239.6 |
237.3 |
| O2 |
C7 |
H8 |
H7 |
120.5 |
122.9 |
| C1 |
N |
H2 |
C2 |
180.0 |
180.0 |
| H2 |
N |
C2 |
C3 |
113.9 |
0.0 |
| H2 |
N |
C2 |
H4 |
234.1 |
120.0 |
| H2 |
N |
C2 |
H3 |
353.7 |
240.0 |
| C1 |
C |
H |
H1 |
120.0 |
120.0 |
| C1 |
C |
H |
H10 |
240.0 |
239.9 |
| H1 |
C |
H |
H10 |
120.0 |
119.9 |
| C1 |
C |
H1 |
H |
240.0 |
240.0 |
| C1 |
C |
H1 |
H10 |
120.0 |
120.0 |
| H |
C |
H1 |
H10 |
240.0 |
240.0 |
| C1 |
C |
H10 |
H |
120.0 |
120.1 |
| C1 |
C |
H10 |
H1 |
240.0 |
240.1 |
| H |
C |
H10 |
H1 |
120.0 |
120.0 |
| N |
C2 |
H4 |
C3 |
238.9 |
240.0 |
| H4 |
C2 |
N |
H2 |
234.1 |
120.0 |
| N |
C2 |
H4 |
H3 |
119.4 |
120.0 |
| H4 |
C2 |
C3 |
C9 |
11.6 |
150.4 |
| C3 |
C2 |
H4 |
H3 |
240.5 |
240.0 |
| N |
C2 |
H3 |
C3 |
121.1 |
120.0 |
| H3 |
C2 |
N |
H2 |
353.7 |
240.0 |
| N |
C2 |
H3 |
H4 |
240.6 |
240.0 |
| H3 |
C2 |
C3 |
C9 |
252.0 |
30.4 |
| C3 |
C2 |
H3 |
H4 |
119.5 |
120.0 |
| H9 |
C9 |
C8 |
O2 |
0.2 |
0.0 |