PDB Chemical Component T2J
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for T2J
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
O |
1.221 |
1.218 |
| N |
O1 |
1.220 |
1.217 |
| C |
N |
1.464 |
1.480 |
| C |
C1 |
1.390 |
1.380 |
| C2 |
C1 |
1.380 |
1.383 |
| C3 |
C2 |
1.382 |
1.382 |
| C4 |
C3 |
1.386 |
1.381 |
| C5 |
C4 |
1.393 |
1.388 |
| C5 |
C |
1.414 |
1.389 |
| N1 |
C5 |
1.394 |
1.397 |
| C6 |
N1 |
1.468 |
1.469 |
| C7 |
C6 |
1.514 |
1.532 |
| N2 |
C7 |
1.467 |
1.470 |
| N2 |
C8 |
1.461 |
1.471 |
| C8 |
C9 |
1.510 |
1.532 |
| C9 |
N1 |
1.467 |
1.470 |
| C10 |
N2 |
1.350 |
1.348 |
| C10 |
O2 |
1.221 |
1.212 |
| C11 |
C10 |
1.499 |
1.507 |
| C4 |
H3 |
1.080 |
1.080 |
| C6 |
H5 |
1.100 |
1.091 |
| C6 |
H4 |
1.100 |
1.089 |
| C7 |
H7 |
1.100 |
1.090 |
| C7 |
H6 |
1.101 |
1.090 |
| C8 |
H9 |
1.100 |
1.091 |
| C8 |
H8 |
1.100 |
1.089 |
| C1 |
H |
1.080 |
1.080 |
| C11 |
H15 |
1.100 |
1.090 |
| C11 |
H13 |
1.100 |
1.090 |
| C11 |
H12 |
1.100 |
1.090 |
| C2 |
H1 |
1.080 |
1.081 |
| C3 |
H2 |
1.080 |
1.080 |
| C9 |
H11 |
1.100 |
1.090 |
| C9 |
H10 |
1.100 |
1.090 |
Bond Angles for T2J
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
N |
O1 |
123.2 |
120.0 |
| C |
N |
O |
118.5 |
120.0 |
| C |
N |
O1 |
118.3 |
120.0 |
| C5 |
C |
N |
122.9 |
120.0 |
| C5 |
C |
C1 |
120.6 |
119.9 |
| C |
C1 |
H |
120.2 |
120.0 |
| C2 |
C1 |
H |
120.2 |
119.9 |
| C4 |
C3 |
C2 |
120.4 |
120.1 |
| C3 |
C2 |
H1 |
119.8 |
119.9 |
| C5 |
C4 |
C3 |
120.6 |
119.9 |
| C3 |
C4 |
H3 |
119.7 |
120.0 |
| C4 |
C3 |
H2 |
119.8 |
120.0 |
| N1 |
C5 |
C4 |
121.3 |
120.1 |
| C5 |
C4 |
H3 |
119.7 |
120.1 |
| N1 |
C5 |
C |
120.5 |
120.1 |
| C7 |
C6 |
H5 |
109.1 |
109.5 |
| C7 |
C6 |
H4 |
109.1 |
109.5 |
| N2 |
C7 |
H7 |
109.1 |
109.6 |
| N2 |
C7 |
H6 |
109.1 |
109.8 |
| N2 |
C8 |
H9 |
109.4 |
109.6 |
| N2 |
C8 |
H8 |
109.4 |
109.8 |
| C9 |
C8 |
H9 |
109.3 |
109.6 |
| C9 |
C8 |
H8 |
109.4 |
109.6 |
| C8 |
C9 |
H11 |
109.3 |
109.5 |
| C8 |
C9 |
H10 |
109.3 |
109.5 |
| N2 |
C10 |
O2 |
122.5 |
120.0 |
| C11 |
C10 |
N2 |
117.9 |
120.0 |
| C11 |
C10 |
O2 |
119.4 |
120.0 |
| H5 |
C6 |
H4 |
109.5 |
109.5 |
| H7 |
C7 |
H6 |
109.5 |
109.6 |
| H9 |
C8 |
H8 |
109.5 |
109.7 |
| H15 |
C11 |
H13 |
109.5 |
109.5 |
| H15 |
C11 |
H12 |
109.5 |
109.4 |
| H13 |
C11 |
H12 |
109.5 |
109.5 |
| H11 |
C9 |
H10 |
109.5 |
109.5 |
Torsion Angles for T2J
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C |
N |
O |
O1 |
177.5 |
180.0 |
| C5 |
C |
N |
O |
76.6 |
174.7 |
| C |
N |
O1 |
O |
182.5 |
180.0 |
| C5 |
C |
N |
O1 |
254.2 |
354.8 |
| O |
N |
C |
O1 |
182.4 |
180.0 |
| C5 |
C |
N |
C1 |
180.1 |
180.0 |
| N1 |
C5 |
C |
N |
0.1 |
0.1 |
| C1 |
C |
N |
O |
256.5 |
354.7 |
| C1 |
C |
N |
O1 |
74.1 |
174.8 |
| C5 |
C |
C1 |
N |
179.9 |
180.0 |
| C2 |
C1 |
C |
H |
180.0 |
180.0 |
| N1 |
C5 |
C |
C1 |
180.3 |
180.0 |
| C |
C1 |
C2 |
H |
180.0 |
180.0 |
| C4 |
C3 |
C2 |
C1 |
0.1 |
0.0 |
| C3 |
C2 |
C1 |
H |
180.0 |
180.0 |
| C5 |
C4 |
C3 |
C2 |
359.8 |
360.0 |
| C2 |
C3 |
C4 |
H3 |
179.8 |
180.2 |
| C4 |
C3 |
C2 |
H2 |
180.0 |
179.7 |
| C4 |
C3 |
C2 |
H1 |
180.2 |
180.0 |
| N1 |
C5 |
C4 |
C3 |
179.9 |
180.0 |
| C5 |
C4 |
C3 |
H3 |
180.0 |
179.7 |
| C3 |
C4 |
C5 |
H3 |
180.0 |
180.3 |
| C5 |
C4 |
C3 |
H2 |
179.8 |
179.7 |
| N1 |
C5 |
C4 |
C |
179.7 |
180.0 |
| C5 |
C |
C1 |
H |
180.0 |
180.0 |
| C |
C5 |
C4 |
C3 |
0.2 |
0.0 |
| N1 |
C5 |
C |
C4 |
180.3 |
180.0 |
| C |
C5 |
C4 |
H3 |
180.1 |
179.8 |
| N1 |
C5 |
C4 |
H3 |
359.8 |
359.7 |
| C6 |
N1 |
C5 |
C |
126.2 |
244.4 |
| H5 |
C6 |
C7 |
H4 |
119.5 |
120.1 |
| N2 |
C7 |
C6 |
H5 |
291.5 |
293.9 |
| N2 |
C7 |
C6 |
H4 |
172.0 |
173.8 |
| H7 |
C7 |
N2 |
H6 |
119.5 |
120.4 |
| C8 |
N2 |
C7 |
H7 |
185.3 |
189.1 |
| C8 |
N2 |
C7 |
H6 |
65.8 |
68.7 |
| C9 |
C8 |
N2 |
H9 |
240.0 |
119.7 |
| C9 |
C8 |
N2 |
H8 |
120.1 |
240.2 |
| N2 |
C8 |
C9 |
H11 |
63.2 |
186.3 |
| N2 |
C8 |
C9 |
H10 |
183.0 |
66.2 |
| H9 |
C8 |
N2 |
H8 |
240.1 |
120.6 |
| N2 |
C8 |
C9 |
H9 |
120.1 |
240.4 |
| N2 |
C8 |
C9 |
H8 |
239.9 |
119.9 |
| H9 |
C8 |
C9 |
H8 |
119.9 |
239.6 |
| H11 |
C9 |
C8 |
H10 |
240.2 |
120.1 |
| C10 |
N2 |
C7 |
H7 |
6.6 |
9.0 |
| C10 |
N2 |
C7 |
H6 |
247.1 |
248.6 |
| C10 |
N2 |
C8 |
H9 |
355.8 |
111.5 |
| C10 |
N2 |
C8 |
H8 |
115.7 |
351.0 |
| C11 |
C10 |
N2 |
O2 |
183.5 |
180.0 |
| C11 |
C10 |
O2 |
N2 |
176.5 |
180.0 |
| N2 |
C10 |
C11 |
O2 |
176.6 |
180.0 |
| H3 |
C4 |
C3 |
C2 |
179.8 |
180.2 |
| C5 |
C4 |
H3 |
C3 |
180.0 |
180.3 |
| H3 |
C4 |
C3 |
H2 |
359.8 |
360.0 |
| C7 |
C6 |
H5 |
H4 |
240.8 |
239.9 |
| C7 |
C6 |
H4 |
H5 |
119.2 |
120.0 |
| H7 |
C7 |
C6 |
H5 |
51.7 |
53.6 |
| H7 |
C7 |
C6 |
H4 |
292.2 |
293.6 |
| N2 |
C7 |
H7 |
H6 |
240.7 |
239.5 |
| H6 |
C7 |
C6 |
H5 |
171.2 |
174.0 |
| H6 |
C7 |
C6 |
H4 |
51.8 |
53.9 |
| N2 |
C7 |
H6 |
H7 |
119.3 |
120.4 |
| N2 |
C8 |
H9 |
H8 |
119.8 |
239.4 |
| C9 |
C8 |
H9 |
H8 |
240.2 |
120.4 |
| H9 |
C8 |
C9 |
H11 |
303.1 |
305.9 |
| H9 |
C8 |
C9 |
H10 |
62.9 |
185.8 |
| N2 |
C8 |
H8 |
H9 |
240.2 |
120.5 |
| C9 |
C8 |
H8 |
H9 |
119.8 |
239.6 |
| H8 |
C8 |
C9 |
H11 |
183.2 |
66.4 |
| H8 |
C8 |
C9 |
H10 |
303.0 |
306.2 |
| H15 |
C11 |
C10 |
N2 |
176.7 |
5.5 |
| H15 |
C11 |
C10 |
O2 |
0.0 |
185.5 |
| H13 |
C11 |
H15 |
H12 |
120.0 |
120.0 |
| H13 |
C11 |
C10 |
N2 |
296.6 |
125.5 |
| H13 |
C11 |
C10 |
O2 |
120.0 |
305.5 |
| H15 |
C11 |
H13 |
H12 |
240.0 |
240.0 |
| H12 |
C11 |
C10 |
N2 |
56.6 |
245.5 |
| H12 |
C11 |
C10 |
O2 |
240.0 |
65.5 |
| H15 |
C11 |
H12 |
H13 |
120.0 |
120.0 |
| H1 |
C2 |
C1 |
H |
360.0 |
360.0 |
| C4 |
C3 |
H2 |
C2 |
180.0 |
180.3 |
| H2 |
C3 |
C2 |
H1 |
0.1 |
0.3 |
| H2 |
C3 |
C4 |
H3 |
359.8 |
360.0 |
| H11 |
C9 |
C8 |
H9 |
303.1 |
305.9 |
| H11 |
C9 |
C8 |
H8 |
183.2 |
66.4 |
| C8 |
C9 |
H11 |
H10 |
119.7 |
239.9 |
| H10 |
C9 |
C8 |
H9 |
62.9 |
185.8 |
| H10 |
C9 |
C8 |
H8 |
303.0 |
306.2 |
| C8 |
C9 |
H10 |
H11 |
240.3 |
120.1 |