Atom Nomenclature for T22

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for T22

Atom Name (V3) Atom Name (V2)
O26 O26
C25 C25
N2 N2
C1 C1
N15 N15
C16 C16
C17 C17
C22 C22
C23 C23
N24 N24
C21 C21
C20 C20
C19 C19
C18 C18
C6 C6
C5 C5
C3 C3
O4 O4
N7 N7
C14 C14
C11 C11
N13 N13
C10 C10
C9 C9
C8 C8
H1 H1
H1A H1A
H1B H1B
H16 H16
H16A H16A
H21 H21
H20 H20
H19 H19
H18 H18
H5 H5
H14 H14
H14A H14A
H11 H11
HN13 HN13
HN1A HN1A
H10 H10
H10A H10A
H9 H9
H9A H9A
H8 H8
H8A H8A