PDB Chemical Component T1Y
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for T1Y
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C |
F |
1.351 |
1.351 |
| C |
C1 |
1.374 |
1.383 |
| C2 |
C1 |
1.380 |
1.382 |
| C3 |
C2 |
1.387 |
1.382 |
| C4 |
C3 |
1.387 |
1.382 |
| C4 |
C5 |
1.384 |
1.381 |
| C5 |
C |
1.376 |
1.386 |
| S |
C4 |
1.767 |
1.762 |
| S |
O |
1.430 |
1.421 |
| S |
O1 |
1.429 |
1.421 |
| N |
S |
1.639 |
1.656 |
| C6 |
N |
1.472 |
1.469 |
| C7 |
C6 |
1.506 |
1.533 |
| N1 |
C7 |
1.464 |
1.470 |
| N1 |
C8 |
1.462 |
1.469 |
| C8 |
C9 |
1.506 |
1.533 |
| C9 |
N |
1.472 |
1.470 |
| C10 |
N1 |
1.354 |
1.347 |
| C10 |
O2 |
1.224 |
1.213 |
| C11 |
C10 |
1.506 |
1.507 |
| C5 |
H3 |
1.080 |
1.080 |
| C6 |
H5 |
1.100 |
1.090 |
| C6 |
H4 |
1.100 |
1.091 |
| C7 |
H7 |
1.100 |
1.089 |
| C7 |
H6 |
1.100 |
1.090 |
| C8 |
H9 |
1.099 |
1.090 |
| C8 |
H8 |
1.100 |
1.090 |
| C1 |
H |
1.080 |
1.081 |
| C11 |
H14 |
1.101 |
1.090 |
| C11 |
H13 |
1.100 |
1.090 |
| C11 |
H12 |
1.100 |
1.091 |
| C2 |
H1 |
1.079 |
1.080 |
| C3 |
H2 |
1.080 |
1.080 |
| C9 |
H11 |
1.099 |
1.090 |
| C9 |
H10 |
1.100 |
1.090 |
Bond Angles for T1Y
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
C |
F |
118.5 |
120.0 |
| C5 |
C |
F |
117.9 |
120.0 |
| C5 |
C |
C1 |
123.6 |
119.9 |
| C |
C1 |
H |
121.1 |
120.0 |
| C2 |
C1 |
H |
121.1 |
120.0 |
| C4 |
C3 |
C2 |
119.9 |
120.0 |
| C3 |
C2 |
H1 |
119.7 |
120.0 |
| C5 |
C4 |
C3 |
120.5 |
120.1 |
| C4 |
C3 |
H2 |
120.0 |
120.0 |
| C4 |
C5 |
C |
117.6 |
119.9 |
| C4 |
C5 |
H3 |
121.2 |
120.1 |
| C |
C5 |
H3 |
121.2 |
120.0 |
| N |
S |
O |
106.4 |
106.4 |
| N |
S |
O1 |
106.7 |
106.4 |
| C6 |
N |
S |
117.0 |
120.6 |
| C9 |
N |
S |
116.7 |
120.6 |
| C7 |
C6 |
N |
109.4 |
108.7 |
| N |
C6 |
H5 |
109.5 |
109.6 |
| N |
C6 |
H4 |
109.5 |
109.6 |
| N1 |
C7 |
C6 |
110.4 |
108.7 |
| C7 |
C6 |
H5 |
109.5 |
109.6 |
| C7 |
C6 |
H4 |
109.5 |
109.8 |
| C7 |
N1 |
C8 |
111.7 |
118.8 |
| N1 |
C7 |
H7 |
109.2 |
109.6 |
| N1 |
C7 |
H6 |
109.3 |
109.6 |
| N1 |
C8 |
C9 |
109.9 |
108.7 |
| N1 |
C8 |
H9 |
109.4 |
109.6 |
| N1 |
C8 |
H8 |
109.4 |
109.6 |
| C8 |
C9 |
N |
108.8 |
108.7 |
| C9 |
C8 |
H9 |
109.4 |
109.6 |
| C9 |
C8 |
H8 |
109.4 |
109.6 |
| C8 |
C9 |
H11 |
109.6 |
109.6 |
| C8 |
C9 |
H10 |
109.6 |
109.6 |
| C11 |
C10 |
O2 |
120.0 |
120.0 |
| H5 |
C6 |
H4 |
109.5 |
109.6 |
| H7 |
C7 |
H6 |
109.4 |
109.7 |
| H9 |
C8 |
H8 |
109.5 |
109.7 |
| H14 |
C11 |
H13 |
109.4 |
109.5 |
| H14 |
C11 |
H12 |
109.5 |
109.5 |
| H13 |
C11 |
H12 |
109.5 |
109.4 |
| H11 |
C9 |
H10 |
109.5 |
109.7 |
Torsion Angles for T1Y
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C5 |
C |
F |
C1 |
179.6 |
180.0 |
| F |
C |
C1 |
H |
0.0 |
0.0 |
| C4 |
C5 |
C |
F |
180.2 |
180.0 |
| F |
C |
C5 |
H3 |
0.1 |
0.0 |
| C5 |
C |
C1 |
F |
180.4 |
180.0 |
| C2 |
C1 |
C |
H |
180.0 |
180.0 |
| C4 |
C5 |
C |
C1 |
359.8 |
360.0 |
| C1 |
C |
C5 |
H3 |
179.7 |
180.0 |
| C2 |
C1 |
C |
F |
180.0 |
180.0 |
| C |
C1 |
C2 |
H |
180.0 |
180.0 |
| C4 |
C3 |
C2 |
C1 |
0.2 |
0.0 |
| C3 |
C2 |
C1 |
H |
179.6 |
180.0 |
| C5 |
C4 |
C3 |
C2 |
0.0 |
360.0 |
| C4 |
C3 |
C2 |
H2 |
180.0 |
180.0 |
| C4 |
C3 |
C2 |
H1 |
180.1 |
180.0 |
| C3 |
C4 |
C5 |
C |
0.0 |
0.0 |
| C3 |
C4 |
C5 |
H3 |
180.0 |
179.9 |
| C5 |
C4 |
C3 |
H2 |
180.0 |
180.0 |
| C |
C5 |
C4 |
H3 |
180.0 |
180.1 |
| C1 |
C |
C5 |
F |
179.6 |
180.0 |
| C5 |
C |
C1 |
H |
180.4 |
180.0 |
| C |
C5 |
C4 |
C3 |
0.0 |
0.0 |
| C4 |
C5 |
C |
H3 |
180.0 |
179.9 |
| S |
C4 |
C3 |
H2 |
359.9 |
0.2 |
| S |
C4 |
C5 |
H3 |
0.1 |
359.7 |
| N |
S |
O |
O1 |
120.9 |
237.1 |
| C6 |
N |
S |
O |
194.8 |
336.5 |
| C9 |
N |
S |
O |
58.3 |
156.4 |
| N |
S |
O1 |
O |
239.2 |
122.9 |
| C6 |
N |
S |
O1 |
323.9 |
203.6 |
| C9 |
N |
S |
O1 |
187.3 |
23.5 |
| C7 |
C6 |
N |
S |
163.8 |
124.7 |
| S |
N |
C6 |
H5 |
283.8 |
5.0 |
| S |
N |
C6 |
H4 |
43.8 |
244.7 |
| C8 |
C9 |
N |
S |
197.5 |
235.3 |
| C9 |
N |
C6 |
S |
138.5 |
180.0 |
| N1 |
C7 |
C6 |
N |
55.6 |
49.5 |
| C7 |
C6 |
N |
H5 |
240.0 |
119.8 |
| C7 |
C6 |
N |
H4 |
120.0 |
240.1 |
| C8 |
C9 |
N |
C6 |
58.8 |
55.2 |
| H5 |
C6 |
N |
H4 |
240.0 |
120.3 |
| N |
C6 |
C7 |
H5 |
120.0 |
240.3 |
| N |
C6 |
C7 |
H4 |
240.0 |
119.8 |
| C6 |
C7 |
N1 |
C8 |
302.6 |
304.8 |
| N1 |
C7 |
C6 |
H7 |
239.8 |
119.8 |
| N1 |
C7 |
C6 |
H6 |
120.2 |
240.3 |
| H5 |
C6 |
C7 |
H4 |
120.0 |
239.6 |
| N1 |
C7 |
C6 |
H5 |
295.6 |
169.2 |
| N1 |
C7 |
C6 |
H4 |
175.6 |
289.6 |
| C7 |
N1 |
C8 |
C9 |
58.6 |
55.2 |
| C7 |
N1 |
C8 |
H9 |
178.7 |
175.0 |
| C7 |
N1 |
C8 |
H8 |
298.6 |
295.4 |
| H7 |
C7 |
N1 |
H6 |
119.7 |
239.6 |
| C8 |
N1 |
C7 |
C6 |
302.6 |
304.8 |
| C8 |
N1 |
C7 |
H7 |
182.4 |
64.6 |
| C8 |
N1 |
C7 |
H6 |
62.7 |
185.0 |
| N1 |
C8 |
C9 |
N |
302.0 |
310.5 |
| C9 |
C8 |
N1 |
H9 |
239.9 |
240.2 |
| C9 |
C8 |
N1 |
H8 |
120.0 |
119.8 |
| N1 |
C8 |
C9 |
H11 |
61.9 |
70.4 |
| N1 |
C8 |
C9 |
H10 |
182.1 |
190.8 |
| H9 |
C8 |
N1 |
H8 |
240.1 |
239.5 |
| N1 |
C8 |
C9 |
H9 |
120.1 |
119.7 |
| N1 |
C8 |
C9 |
H8 |
240.0 |
240.2 |
| H9 |
C8 |
C9 |
H8 |
119.9 |
120.5 |
| H11 |
C9 |
C8 |
H10 |
239.8 |
239.5 |
| C6 |
N |
C9 |
S |
221.4 |
180.0 |
| C9 |
N |
C6 |
H5 |
62.3 |
185.0 |
| C9 |
N |
C6 |
H4 |
182.3 |
64.7 |
| N |
C9 |
C8 |
H9 |
181.9 |
190.8 |
| N |
C9 |
C8 |
H8 |
62.0 |
70.3 |
| C8 |
C9 |
N |
H11 |
119.9 |
119.8 |
| C8 |
C9 |
N |
H10 |
240.1 |
240.3 |
| C10 |
N1 |
C7 |
H7 |
2.6 |
244.3 |
| C10 |
N1 |
C7 |
H6 |
242.9 |
4.7 |
| C10 |
N1 |
C8 |
C9 |
238.4 |
235.5 |
| C10 |
N1 |
C8 |
H9 |
358.5 |
355.3 |
| C10 |
N1 |
C8 |
H8 |
118.4 |
115.8 |
| H3 |
C5 |
C |
F |
0.1 |
0.0 |
| H3 |
C5 |
C |
C1 |
179.7 |
180.0 |
| H3 |
C5 |
C4 |
C3 |
180.0 |
179.9 |
| C4 |
C5 |
H3 |
C |
180.0 |
180.1 |
| H5 |
C6 |
N |
S |
283.8 |
5.0 |
| C7 |
C6 |
H5 |
N |
120.0 |
240.8 |
| N |
C6 |
H5 |
H4 |
120.0 |
239.7 |
| C7 |
C6 |
H5 |
H4 |
240.0 |
120.5 |
| H4 |
C6 |
N |
S |
43.8 |
244.7 |
| C7 |
C6 |
H4 |
N |
240.0 |
119.3 |
| N |
C6 |
H4 |
H5 |
240.0 |
120.3 |
| C7 |
C6 |
H4 |
H5 |
120.0 |
239.5 |
| H7 |
C7 |
C6 |
N |
175.8 |
289.7 |
| N1 |
C7 |
H7 |
C6 |
120.9 |
240.8 |
| H7 |
C7 |
C6 |
H5 |
55.8 |
49.4 |
| H7 |
C7 |
C6 |
H4 |
295.8 |
169.9 |
| H7 |
C7 |
N1 |
C8 |
182.4 |
64.6 |
| N1 |
C7 |
H7 |
H6 |
240.4 |
120.4 |
| H6 |
C7 |
C6 |
N |
295.5 |
169.2 |
| N1 |
C7 |
H6 |
C6 |
239.1 |
119.1 |
| H6 |
C7 |
C6 |
H5 |
175.4 |
288.9 |
| H6 |
C7 |
C6 |
H4 |
55.5 |
49.4 |
| H6 |
C7 |
N1 |
C8 |
62.7 |
185.0 |
| N1 |
C7 |
H6 |
H7 |
119.5 |
239.6 |
| N1 |
C8 |
H9 |
C9 |
239.6 |
240.8 |
| N1 |
C8 |
H9 |
H8 |
119.8 |
120.4 |
| H9 |
C8 |
C9 |
N |
181.9 |
190.8 |
| C9 |
C8 |
H9 |
H8 |
240.2 |
239.6 |
| H9 |
C8 |
C9 |
H11 |
301.8 |
310.6 |
| H9 |
C8 |
C9 |
H10 |
62.0 |
71.1 |
| N1 |
C8 |
H8 |
C9 |
120.4 |
119.2 |
| N1 |
C8 |
H8 |
H9 |
240.2 |
239.6 |
| H8 |
C8 |
C9 |
N |
62.0 |
70.3 |
| C9 |
C8 |
H8 |
H9 |
119.8 |
120.4 |
| H8 |
C8 |
C9 |
H11 |
181.9 |
190.2 |
| H8 |
C8 |
C9 |
H10 |
302.1 |
310.6 |
| H |
C1 |
C |
F |
0.0 |
0.0 |
| H14 |
C11 |
C10 |
O2 |
0.0 |
184.9 |
| H13 |
C11 |
H14 |
H12 |
120.0 |
120.0 |
| H13 |
C11 |
C10 |
O2 |
120.0 |
304.9 |
| H14 |
C11 |
H13 |
H12 |
240.0 |
240.0 |
| H12 |
C11 |
C10 |
O2 |
240.0 |
64.9 |
| H14 |
C11 |
H12 |
H13 |
120.0 |
120.0 |
| H1 |
C2 |
C1 |
H |
359.7 |
0.0 |
| C4 |
C3 |
H2 |
C2 |
180.0 |
180.0 |
| H2 |
C3 |
C2 |
H1 |
0.1 |
0.0 |
| H11 |
C9 |
N |
S |
77.6 |
115.4 |
| C8 |
C9 |
H11 |
N |
240.6 |
240.8 |
| H11 |
C9 |
C8 |
H9 |
301.8 |
310.6 |
| H11 |
C9 |
C8 |
H8 |
181.9 |
190.2 |
| C8 |
C9 |
H11 |
H10 |
120.3 |
120.4 |
| H10 |
C9 |
N |
S |
317.4 |
355.0 |
| C8 |
C9 |
H10 |
N |
119.4 |
119.1 |
| H10 |
C9 |
C8 |
H9 |
62.0 |
71.1 |
| H10 |
C9 |
C8 |
H8 |
302.1 |
310.6 |
| C8 |
C9 |
H10 |
H11 |
239.7 |
239.6 |