Atom Nomenclature for T1S

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for T1S

Atom Name (V3) Atom Name (V2)
C10 C1
C13 C2
C02 C3
C03 C4
C04 C5
C05 C6
C06 C7
C07 C8
C09 C9
C12 C10
C14 C11
N08 N1
O11 O1
CL01 CL1
H101 H1
H102 H2
H131 H3
H132 H4
H031 H5
H041 H6
H051 H7
H071 H8
H072 H9
H091 H10
H092 H11
H121 H12
H122 H13
H141 H14