PDB Chemical Component T1M
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for T1M
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C02 |
C01 |
1.527 |
1.530 |
| C03 |
C02 |
1.538 |
1.531 |
| O04 |
C03 |
1.402 |
1.430 |
| C05 |
C03 |
1.442 |
1.531 |
| C06 |
C05 |
1.439 |
1.531 |
| C07 |
C06 |
1.522 |
1.530 |
| N08 |
C07 |
1.452 |
1.468 |
| C09 |
N08 |
1.239 |
1.469 |
| C10 |
C09 |
1.529 |
1.507 |
| C11 |
C10 |
1.390 |
1.382 |
| C12 |
C11 |
1.388 |
1.382 |
| C13 |
C12 |
1.387 |
1.382 |
| C14 |
C13 |
1.389 |
1.382 |
| C15 |
C14 |
1.391 |
1.383 |
| C02 |
N08 |
1.457 |
1.469 |
| C10 |
C15 |
1.393 |
1.382 |
| C13 |
H131 |
1.080 |
1.080 |
| C15 |
H151 |
1.080 |
1.081 |
| C01 |
H011 |
1.100 |
1.090 |
| C01 |
H013 |
1.100 |
1.090 |
| C01 |
H012 |
1.100 |
1.090 |
| C02 |
H021 |
1.100 |
1.090 |
| C03 |
H031 |
1.100 |
1.091 |
| C05 |
H051 |
1.100 |
1.090 |
| C05 |
H052 |
1.100 |
1.091 |
| C06 |
H061 |
1.100 |
1.090 |
| C06 |
H062 |
1.101 |
1.091 |
| C07 |
H071 |
1.100 |
1.090 |
| C07 |
H072 |
1.100 |
1.090 |
| C09 |
H091 |
1.100 |
1.090 |
| C09 |
H092 |
1.100 |
1.091 |
| C11 |
H111 |
1.080 |
1.080 |
| C12 |
H121 |
1.080 |
1.080 |
| C14 |
H141 |
1.080 |
1.080 |
| O04 |
H041 |
0.950 |
0.967 |
Bond Angles for T1M
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C02 |
C01 |
H011 |
109.5 |
109.4 |
| C02 |
C01 |
H013 |
109.5 |
109.4 |
| C02 |
C01 |
H012 |
109.5 |
109.5 |
| C03 |
C02 |
N08 |
115.1 |
109.5 |
| C03 |
C02 |
H021 |
107.7 |
109.5 |
| O04 |
C03 |
H031 |
108.9 |
109.4 |
| C05 |
C03 |
H031 |
108.4 |
109.6 |
| C06 |
C05 |
H051 |
107.8 |
109.5 |
| C06 |
C05 |
H052 |
107.8 |
109.5 |
| C07 |
C06 |
H061 |
108.1 |
109.5 |
| C07 |
C06 |
H062 |
108.1 |
109.5 |
| C02 |
N08 |
C07 |
113.9 |
111.2 |
| N08 |
C07 |
H071 |
107.7 |
109.5 |
| N08 |
C07 |
H072 |
107.7 |
109.4 |
| C10 |
C09 |
N08 |
116.6 |
109.5 |
| C02 |
N08 |
C09 |
115.4 |
111.0 |
| N08 |
C09 |
H091 |
107.7 |
109.5 |
| N08 |
C09 |
H092 |
107.7 |
109.5 |
| C15 |
C10 |
C09 |
121.2 |
120.0 |
| C10 |
C09 |
H091 |
107.7 |
109.4 |
| C10 |
C09 |
H092 |
107.7 |
109.5 |
| C13 |
C12 |
C11 |
119.9 |
120.0 |
| C12 |
C11 |
H111 |
120.0 |
120.0 |
| C12 |
C13 |
H131 |
119.9 |
120.0 |
| C13 |
C12 |
H121 |
120.0 |
120.0 |
| C14 |
C13 |
H131 |
119.9 |
120.0 |
| C10 |
C15 |
C14 |
119.9 |
120.0 |
| C14 |
C15 |
H151 |
120.1 |
120.0 |
| C15 |
C14 |
H141 |
120.0 |
120.0 |
| N08 |
C02 |
H021 |
108.8 |
109.5 |
| C10 |
C15 |
H151 |
120.0 |
120.0 |
| H011 |
C01 |
H013 |
109.4 |
109.5 |
| H011 |
C01 |
H012 |
109.4 |
109.5 |
| H013 |
C01 |
H012 |
109.5 |
109.5 |
| H051 |
C05 |
H052 |
109.5 |
109.5 |
| H061 |
C06 |
H062 |
109.5 |
109.5 |
| H071 |
C07 |
H072 |
109.5 |
109.4 |
| H091 |
C09 |
H092 |
109.5 |
109.5 |
Torsion Angles for T1M
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H011 |
C01 |
C02 |
H013 |
240.0 |
240.0 |
| H011 |
C01 |
C02 |
H012 |
120.0 |
120.0 |
| H013 |
C01 |
C02 |
H012 |
240.0 |
240.0 |
| C03 |
C02 |
C01 |
H011 |
180.0 |
180.0 |
| C03 |
C02 |
C01 |
H013 |
300.0 |
300.0 |
| C03 |
C02 |
C01 |
H012 |
60.0 |
60.0 |
| C03 |
C02 |
N08 |
C07 |
311.5 |
298.3 |
| C03 |
C02 |
N08 |
C09 |
184.3 |
174.2 |
| N08 |
C02 |
C03 |
H021 |
238.5 |
240.0 |
| O04 |
C03 |
C02 |
H021 |
28.4 |
59.2 |
| C05 |
C03 |
O04 |
H031 |
118.3 |
120.2 |
| C05 |
C03 |
C02 |
N08 |
29.1 |
59.2 |
| C05 |
C03 |
C02 |
H021 |
150.6 |
179.2 |
| O04 |
C03 |
C05 |
H031 |
241.4 |
239.9 |
| C06 |
C05 |
C03 |
H031 |
259.6 |
182.4 |
| H051 |
C05 |
C06 |
H052 |
118.1 |
120.1 |
| C07 |
C06 |
C05 |
H051 |
190.9 |
297.7 |
| C07 |
C06 |
C05 |
H052 |
72.8 |
177.6 |
| C02 |
N08 |
C07 |
C06 |
19.8 |
61.7 |
| H061 |
C06 |
C07 |
H062 |
118.5 |
120.1 |
| N08 |
C07 |
C06 |
H061 |
267.3 |
180.9 |
| N08 |
C07 |
C06 |
H062 |
148.8 |
60.8 |
| C10 |
C09 |
N08 |
C07 |
147.0 |
65.8 |
| C02 |
N08 |
C07 |
C09 |
229.6 |
235.9 |
| C07 |
N08 |
C02 |
H021 |
190.6 |
178.3 |
| H071 |
C07 |
N08 |
H072 |
118.0 |
119.9 |
| C02 |
N08 |
C09 |
C07 |
129.6 |
124.2 |
| C09 |
N08 |
C07 |
H071 |
29.2 |
65.8 |
| C09 |
N08 |
C07 |
H072 |
271.3 |
305.8 |
| C15 |
C10 |
C09 |
N08 |
97.3 |
90.0 |
| C10 |
C09 |
N08 |
H091 |
239.0 |
120.0 |
| C10 |
C09 |
N08 |
H092 |
121.0 |
240.0 |
| C09 |
N08 |
C02 |
H021 |
63.4 |
54.2 |
| H091 |
C09 |
N08 |
H092 |
242.1 |
120.0 |
| C02 |
N08 |
C09 |
C10 |
276.6 |
190.0 |
| N08 |
C09 |
C10 |
H091 |
121.0 |
240.0 |
| N08 |
C09 |
C10 |
H092 |
239.0 |
120.0 |
| C09 |
C10 |
C15 |
C14 |
178.9 |
180.0 |
| C09 |
C10 |
C15 |
H151 |
359.0 |
0.0 |
| H091 |
C09 |
C10 |
H092 |
117.9 |
240.0 |
| C11 |
C10 |
C09 |
N08 |
274.7 |
270.3 |
| C11 |
C10 |
C09 |
H091 |
153.7 |
30.3 |
| C11 |
C10 |
C09 |
H092 |
35.8 |
150.3 |
| C11 |
C10 |
C15 |
C14 |
1.6 |
359.7 |
| C11 |
C10 |
C15 |
H151 |
181.6 |
179.7 |
| C11 |
C12 |
C13 |
H131 |
179.9 |
180.0 |
| C13 |
C12 |
C11 |
H121 |
180.0 |
180.2 |
| C13 |
C12 |
C11 |
H111 |
180.7 |
180.0 |
| C14 |
C13 |
C12 |
H131 |
180.0 |
179.8 |
| C12 |
C13 |
C14 |
H131 |
180.0 |
180.2 |
| C14 |
C13 |
C12 |
H121 |
179.8 |
180.0 |
| C10 |
C15 |
C14 |
C13 |
359.0 |
360.0 |
| C14 |
C15 |
C10 |
C09 |
178.9 |
180.0 |
| C15 |
C14 |
C13 |
H131 |
180.3 |
180.1 |
| C10 |
C15 |
C14 |
H151 |
180.0 |
180.0 |
| N08 |
C02 |
C01 |
H011 |
54.3 |
60.0 |
| N08 |
C02 |
C01 |
H013 |
174.3 |
180.0 |
| N08 |
C02 |
C01 |
H012 |
294.3 |
300.0 |
| C03 |
C02 |
N08 |
H021 |
120.9 |
120.0 |
| C02 |
N08 |
C07 |
H071 |
258.8 |
301.7 |
| C02 |
N08 |
C07 |
H072 |
140.8 |
181.7 |
| C10 |
C09 |
N08 |
C02 |
276.6 |
190.0 |
| C02 |
N08 |
C09 |
H091 |
37.6 |
70.0 |
| C02 |
N08 |
C09 |
H092 |
155.5 |
310.0 |
| C15 |
C10 |
C09 |
H091 |
336.2 |
210.0 |
| C15 |
C10 |
C09 |
H092 |
218.3 |
330.0 |
| C14 |
C15 |
C10 |
H151 |
180.0 |
180.0 |
| C10 |
C15 |
C14 |
H141 |
179.0 |
180.0 |
| H131 |
C13 |
C12 |
C11 |
179.9 |
180.0 |
| H131 |
C13 |
C12 |
H121 |
359.9 |
0.2 |
| H151 |
C15 |
C10 |
C09 |
359.0 |
0.0 |
| C10 |
C15 |
H151 |
C14 |
180.0 |
180.0 |
| H151 |
C15 |
C14 |
H141 |
359.0 |
0.0 |
| C02 |
C01 |
H011 |
H013 |
120.0 |
120.0 |
| C02 |
C01 |
H011 |
H012 |
240.0 |
240.0 |
| H013 |
C01 |
H011 |
H012 |
120.0 |
120.1 |
| C02 |
C01 |
H013 |
H011 |
240.0 |
240.0 |
| C02 |
C01 |
H013 |
H012 |
120.0 |
120.0 |
| H011 |
C01 |
H013 |
H012 |
240.1 |
240.0 |
| C02 |
C01 |
H012 |
H011 |
120.1 |
120.0 |
| C02 |
C01 |
H012 |
H013 |
240.0 |
240.0 |
| H011 |
C01 |
H012 |
H013 |
119.9 |
120.1 |
| H021 |
C02 |
C01 |
H011 |
295.2 |
300.0 |
| H021 |
C02 |
C01 |
H013 |
55.2 |
60.0 |
| H021 |
C02 |
C01 |
H012 |
175.2 |
180.0 |
| C03 |
C02 |
H021 |
N08 |
234.7 |
240.0 |
| H021 |
C02 |
N08 |
C07 |
190.6 |
178.3 |
| H021 |
C02 |
N08 |
C09 |
63.4 |
54.2 |
| H031 |
C03 |
C02 |
N08 |
149.7 |
179.2 |
| H031 |
C03 |
C02 |
H021 |
271.2 |
299.2 |
| H051 |
C05 |
C03 |
H031 |
20.5 |
302.3 |
| C06 |
C05 |
H051 |
H052 |
242.9 |
239.9 |
| H052 |
C05 |
C03 |
H031 |
138.6 |
62.4 |
| C06 |
C05 |
H052 |
H051 |
117.1 |
120.1 |
| H061 |
C06 |
C05 |
H051 |
311.6 |
57.6 |
| H061 |
C06 |
C05 |
H052 |
193.5 |
297.5 |
| C07 |
C06 |
H061 |
H062 |
242.4 |
239.9 |
| H062 |
C06 |
C05 |
H051 |
70.1 |
177.7 |
| H062 |
C06 |
C05 |
H052 |
312.0 |
57.6 |
| C07 |
C06 |
H062 |
H061 |
117.6 |
120.1 |
| H071 |
C07 |
C06 |
H061 |
28.3 |
300.9 |
| H071 |
C07 |
C06 |
H062 |
269.8 |
180.8 |
| N08 |
C07 |
H071 |
H072 |
243.2 |
240.1 |
| H072 |
C07 |
C06 |
H061 |
146.3 |
60.8 |
| H072 |
C07 |
C06 |
H062 |
27.8 |
300.7 |
| N08 |
C07 |
H072 |
H071 |
116.8 |
120.0 |
| C10 |
C09 |
H091 |
N08 |
126.5 |
240.0 |
| N08 |
C09 |
H091 |
H092 |
116.8 |
240.0 |
| C10 |
C09 |
H091 |
H092 |
243.3 |
120.0 |
| C10 |
C09 |
H092 |
N08 |
233.5 |
120.0 |
| N08 |
C09 |
H092 |
H091 |
243.2 |
120.0 |
| C10 |
C09 |
H092 |
H091 |
116.7 |
240.1 |
| C13 |
C12 |
H121 |
C11 |
180.0 |
179.8 |
| H121 |
C12 |
C11 |
H111 |
0.7 |
359.8 |
| H121 |
C12 |
C13 |
H131 |
359.9 |
0.2 |
| H141 |
C14 |
C13 |
H131 |
0.3 |
0.1 |
| H141 |
C14 |
C15 |
H151 |
359.0 |
0.0 |
| H041 |
O04 |
C03 |
H031 |
296.1 |
300.0 |