Atom Nomenclature for T1J

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for T1J

Atom Name (V3) Atom Name (V2)
C10 C1
C13 C2
C15 C3
C17 C4
C02 C5
C03 C6
C04 C7
C05 C8
C06 C9
C07 C10
C08 C11
C12 C12
C14 C13
C16 C14
N09 N1
N11 N2
N18 N3
O01 O1
H131 H1
H151 H2
H031 H3
H041 H4
H051 H5
H061 H6
H081 H7
H082 H8
H141 H9
H161 H10
H091 H11
H181 H13
H011 H14