PDB Chemical Component T1D

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for T1D

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O	C	1.211	1.214
C	N	1.337	1.341
C	C1	1.518	1.494
N	S	1.600	1.666
N	H	1.020	0.970
S	O1	1.562	1.420
S	O2	1.546	1.421
S	N1	1.556	1.670
N1	C1	1.460	1.470
N1	C2	1.422	1.399
C1	H1	1.115	1.090
C1	H11A	1.115	1.090
C2	C3	1.405	1.386
C2	C7	1.396	1.394
C3	C4	1.416	1.394
C3	H3	1.103	1.079
C4	C5	1.405	1.393
C4	C9	1.403	1.483
C5	C6	1.396	1.380
C5	H5	1.103	1.080
C6	C7	1.403	1.386
C6	H6	1.103	1.080
C7	O3	1.366	1.360
O3	C8	1.437	1.429
C8	H8C1	1.115	1.091
C8	H8C2	1.115	1.091
C8	H8C3	1.115	1.089
C9	C10	1.405	1.394
C9	C14	1.406	1.394
C10	C11	1.406	1.380
C10	H10	1.104	1.080
C11	C12	1.395	1.383
C11	H11	1.103	1.079
C12	C13	1.413	1.383
C12	H12	1.103	1.080
C13	C14	1.399	1.380
C13	H13	1.103	1.080
C14	H14	1.103	1.080

Bond Angles for T1D

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O	C	N	125.7	122.5
O	C	C1	121.5	122.5
N	C	C1	112.9	115.0
C	N	S	111.5	107.2
C	N	H	124.2	126.4
C	C1	N1	103.9	111.5
C	C1	H1	114.3	109.1
C	C1	H11A	114.4	109.1
S	N	H	124.3	126.4
N	S	O1	111.7	106.4
N	S	O2	113.4	106.4
N	S	N1	98.7	102.5
O1	S	O2	112.1	126.4
O1	S	N1	109.0	106.0
O2	S	N1	111.0	106.8
S	N1	C1	113.0	103.9
S	N1	C2	127.5	128.0
C1	N1	C2	119.4	128.1
N1	C1	H1	114.3	109.1
N1	C1	H11A	114.3	109.1
N1	C2	C3	123.4	120.0
N1	C2	C7	117.0	120.1
H1	C1	H11A	96.1	108.9
C3	C2	C7	119.5	119.9
C2	C3	C4	120.4	119.9
C2	C3	H3	119.8	120.0
C2	C7	C6	120.6	120.1
C2	C7	O3	118.2	119.9
C4	C3	H3	119.8	120.1
C3	C4	C5	119.0	119.9
C3	C4	C9	123.3	120.0
C5	C4	C9	117.7	120.1
C4	C5	C6	120.7	120.1
C4	C5	H5	119.7	119.9
C4	C9	C10	120.2	120.1
C4	C9	C14	120.5	120.2
C6	C5	H5	119.7	120.0
C5	C6	C7	119.8	120.1
C5	C6	H6	120.1	120.0
C7	C6	H6	120.1	119.9
C6	C7	O3	121.1	120.0
C7	O3	C8	123.0	106.8
O3	C8	H8C1	123.0	109.5
O3	C8	H8C2	107.4	109.5
O3	C8	H8C3	107.4	109.5
H8C1	C8	H8C2	107.4	109.4
H8C1	C8	H8C3	107.4	109.5
H8C2	C8	H8C3	102.4	109.4
C10	C9	C14	119.3	119.7
C9	C10	C11	121.0	119.9
C9	C10	H10	119.5	120.0
C9	C14	C13	119.6	119.9
C9	C14	H14	120.2	120.0
C11	C10	H10	119.5	120.1
C10	C11	C12	119.8	120.1
C10	C11	H11	120.1	120.0
C12	C11	H11	120.1	119.9
C11	C12	C13	119.3	120.3
C11	C12	H12	120.4	119.9
C13	C12	H12	120.4	119.8
C12	C13	C14	121.0	120.1
C12	C13	H13	119.5	120.0
C14	C13	H13	119.5	119.9
C13	C14	H14	120.2	120.1

Torsion Angles for T1D

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N	C	O	C1	179.7	180.0
O	C	N	S	179.4	179.7
O	C	N	H	359.5	0.0
O	C	C1	N1	179.1	180.0
O	C	C1	H1	304.4	300.5
O	C	C1	H11A	53.8	59.5
O	C	N	C1	180.3	180.0
N	C	C1	N1	359.4	0.0
N	C	C1	H1	124.6	120.6
N	C	C1	H11A	234.1	239.5
S	N	C	H	180.0	179.7
C	N	S	O1	247.2	111.5
C	N	S	O2	119.3	248.5
C	N	S	N1	1.8	0.4
O	C	C1	N	179.7	180.0
C1	C	N	S	359.2	359.7
C1	C	N	H	179.2	180.0
S	N1	C1	C	1.9	0.3
C	C1	N1	C2	178.5	180.0
N1	C1	C	H1	234.7	239.5
N1	C1	C	H11A	125.3	120.5
H1	C1	C	H11A	250.5	241.1
S	N	C	C1	359.2	359.7
C	N	S	H	180.0	180.3
O1	S	N	O2	127.9	223.0
O1	S	N	N1	245.4	111.1
O2	S	N	N1	117.5	248.1
N	S	N1	C1	357.8	359.6
N	S	N1	C2	181.5	179.9
H	N	C	C1	179.2	180.0
C	N	H	S	180.0	179.7
H	N	S	O1	67.2	291.3
H	N	S	O2	299.3	68.2
H	N	S	N1	181.8	180.1
O1	S	N	H	67.2	291.3
N	S	O1	O2	231.4	125.6
N	S	O1	N1	108.1	251.3
O2	S	O1	N1	236.6	125.7
O1	S	N1	C1	114.5	248.2
O1	S	N1	C2	298.2	68.5
O2	S	N	H	299.3	68.2
N	S	O2	O1	127.7	234.4
N	S	O2	N1	249.9	108.9
O1	S	O2	N1	122.2	234.6
O2	S	N1	C1	238.5	111.2
O2	S	N1	C2	62.2	291.5
C	C1	N1	S	1.9	0.3
N1	S	N	H	181.8	180.1
N	S	N1	O1	243.3	111.4
N	S	N1	O2	119.3	248.4
O1	S	N1	O2	236.0	137.0
C1	N1	S	C2	176.3	179.7
S	N1	C1	H1	236.6	239.7
S	N1	C1	H11A	127.2	120.8
S	N1	C2	C3	271.2	264.7
S	N1	C2	C7	92.3	84.1
C	C1	N1	H1	125.2	120.6
C	C1	N1	H11A	234.7	239.4
S	N1	C1	C2	183.4	180.3
C1	N1	C2	C3	95.1	85.0
C1	N1	C2	C7	276.3	264.5
H1	C1	N1	H11A	109.5	118.9
S	N1	C2	C1	176.1	179.6
C2	N1	C1	H1	53.3	59.4
C2	N1	C1	H11A	303.8	300.5
C3	C2	N1	C7	178.9	180.5
N1	C2	C3	C4	180.2	180.0
N1	C2	C3	H3	0.1	359.7
N1	C2	C7	C6	179.0	180.0
N1	C2	C7	O3	359.6	0.2
C	C1	H1	N1	240.5	238.0
C	C1	H1	H11A	120.2	119.1
H1	C1	N1	C2	53.3	59.4
N1	C1	H1	H11A	239.8	241.0
C	C1	H11A	N1	119.5	122.0
C	C1	H11A	H1	239.8	241.0
H11A	C1	N1	C2	303.8	300.5
N1	C1	H11A	H1	120.2	119.0
N1	C2	C3	C7	181.2	179.5
C3	C2	C7	C6	0.1	359.5
C3	C2	C7	O3	180.7	179.7
C4	C3	C2	H3	180.0	180.3
C2	C3	C4	C5	1.6	359.7
C2	C3	C4	C9	179.7	179.7
N1	C2	C7	C3	178.9	180.5
C7	C2	C3	C4	359.0	0.6
C7	C2	C3	H3	179.0	180.2
C5	C6	C7	C2	0.2	0.2
C2	C7	C6	H6	180.2	180.2
C6	C7	C2	O3	179.4	179.8
C2	C7	O3	C8	170.9	179.7
C4	C3	C2	C7	359.0	0.6
C2	C3	C4	H3	180.0	179.7
C5	C4	C3	C9	182.0	180.0
C3	C4	C5	C6	358.6	359.9
C3	C4	C5	H5	178.6	180.0
C3	C4	C9	C10	333.3	219.9
C3	C4	C9	C14	156.2	39.8
H3	C3	C2	C7	179.0	180.2
C2	C3	H3	C4	180.0	180.3
H3	C3	C4	C5	181.7	180.1
H3	C3	C4	C9	359.7	0.0
C5	C4	C3	H3	181.7	180.1
C3	C4	C5	C9	178.1	180.0
C5	C4	C9	C10	151.3	39.9
C5	C4	C9	C14	334.2	219.7
C6	C5	C4	H5	180.0	179.9
C4	C5	C6	C7	0.5	0.1
C4	C5	C6	H6	180.5	180.1
C9	C4	C3	H3	359.7	0.0
C3	C4	C9	C5	182.0	180.0
C9	C4	C5	C6	180.5	179.9
C9	C4	C5	H5	0.4	0.0
C10	C9	C4	C14	177.1	180.2
C4	C9	C10	C11	181.4	180.0
C4	C9	C10	H10	1.4	0.1
C4	C9	C14	C13	177.9	179.7
C4	C9	C14	H14	357.9	0.2
C2	C7	C6	C5	0.2	0.2
C6	C5	C4	C9	180.5	179.9
C4	C5	C6	H5	180.0	180.1
C7	C6	C5	H6	180.0	180.0
C5	C6	C7	O3	179.5	180.0
H5	C5	C4	C9	0.4	0.0
C4	C5	H5	C6	180.0	179.9
H5	C5	C6	C7	180.6	180.0
H5	C5	C6	H6	0.5	360.0
C2	C7	C6	O3	180.6	180.2
C7	C6	C5	H5	180.6	180.0
C5	C6	C7	H6	180.0	180.0
C6	C7	O3	C8	351.5	359.9
H6	C6	C5	H5	0.5	360.0
C5	C6	H6	C7	180.0	180.0
H6	C6	C7	O3	359.5	0.0
C2	C7	O3	C6	179.4	179.8
O3	C7	C6	H6	359.5	0.0
C7	O3	C8	H8C1	180.0	60.1
C7	O3	C8	H8C2	54.7	180.0
C7	O3	C8	H8C3	305.2	300.0
H8C1	C8	O3	H8C2	125.3	240.1
H8C1	C8	O3	H8C3	234.8	120.1
H8C2	C8	O3	H8C3	109.5	240.0
O3	C8	H8C1	H8C2	234.7	120.0
O3	C8	H8C1	H8C3	125.2	239.9
H8C2	C8	H8C1	H8C3	250.5	119.9
O3	C8	H8C2	H8C1	134.1	240.0
O3	C8	H8C2	H8C3	247.1	120.0
H8C1	C8	H8C2	H8C3	112.9	240.0
O3	C8	H8C3	H8C1	225.9	120.1
O3	C8	H8C3	H8C2	112.9	240.0
H8C1	C8	H8C3	H8C2	247.1	119.9
C4	C9	C10	C14	182.9	179.8
C10	C9	C14	C13	0.8	359.6
C10	C9	C14	H14	180.8	180.0
C11	C10	C9	H10	180.0	180.0
C9	C10	C11	C12	1.5	0.0
C9	C10	C11	H11	181.5	180.0
C4	C9	C14	C10	177.1	180.2
C14	C9	C10	C11	358.5	0.2
C14	C9	C10	H10	178.5	180.2
C12	C13	C14	C9	359.9	0.5
C9	C14	C13	H13	179.9	180.3
C13	C14	C9	H14	180.0	179.6
C11	C10	C9	C14	358.5	0.2
C9	C10	C11	H10	180.0	180.0
C12	C11	C10	H11	180.0	180.0
C10	C11	C12	C13	359.2	0.0
C10	C11	C12	H12	179.1	180.0
H10	C10	C9	C14	178.5	180.2
C9	C10	H10	C11	180.0	180.0
H10	C10	C11	C12	181.5	180.0
H10	C10	C11	H11	1.5	0.0
C12	C11	C10	H10	181.5	180.0
C10	C11	C12	H11	180.0	180.0
C13	C12	C11	H12	180.0	180.0
C11	C12	C13	C14	0.2	359.8
C11	C12	C13	H13	180.2	179.9
H11	C11	C10	H10	1.5	0.0
C10	C11	H11	C12	180.0	180.0
H11	C11	C12	C13	179.2	180.0
H11	C11	C12	H12	359.2	360.0
C9	C14	C13	C12	359.9	0.5
C13	C12	C11	H11	179.2	180.0
C11	C12	C13	H12	180.0	180.0
C14	C13	C12	H13	180.0	179.8
C12	C13	C14	H14	179.9	180.0
H12	C12	C11	H11	359.2	360.0
C11	C12	H12	C13	180.0	180.0
H12	C12	C13	C14	180.2	179.8
H12	C12	C13	H13	0.2	360.0
C9	C14	C13	H14	180.0	180.4
C14	C13	C12	H12	180.2	179.8
C12	C13	C14	H13	180.0	180.2
H13	C13	C12	H12	0.2	360.0
C12	C13	H13	C14	180.0	179.8
H13	C13	C14	H14	359.9	359.8
C9	C14	H14	C13	180.0	179.6
H14	C14	C13	H13	359.9	359.8