Atom Nomenclature for T1C

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for T1C

Atom Name (V3) Atom Name (V2)
C94 C94
C93 C93
C95 C95
C96 C96
N92 N92
C92 C92
C91 C91
O91 O91
N9 N9
C9 C9
C8 C8
C7 C7
N7 N7
C71 C71
C72 C72
C61 C61
C6 C6
C51 C51
C5 C5
C41 C41
C4 C4
N4 N4
C43 C43
C42 C42
C3 C3
O3 O3
C2 C2
C21 C21
O21 O21
N21 N21
C1 C1
O1 O1
C1C C1C
O1C O1C
C12 C12
O12 O12
C1B C1B
C11 C11
O11 O11
C1A C1A
C10 C10
O10 O10
H941 H941
H942 H942
H943 H943
H951 H951
H952 H952
H953 H953
H961 H961
H962 H962
H963 H963
H92 H92
H921 H921
H922 H922
H9 H9
H8 H8
H711 H711
H712 H712
H713 H713
H721 H721
H722 H722
H723 H723
H61C H61C
H62C H62C
H51 H51
H51C H51C
H52C H52C
H41 H41
H4 H4
H431 H431
H432 H432
H433 H433
H421 H421
H422 H422
H423 H423
H3 H3
H211 H211
H212 H212
H1C H1C
H12 H12
H10 H10
H42 H42
H7 H7