PDB Chemical Component T0Y
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for T0Y
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C02 |
O01 |
1.407 |
1.429 |
| C03 |
C02 |
1.441 |
1.532 |
| C04 |
C03 |
1.532 |
1.530 |
| N05 |
C04 |
1.443 |
1.468 |
| C07 |
C06 |
1.535 |
1.507 |
| C08 |
C07 |
1.526 |
1.384 |
| C09 |
C08 |
1.435 |
1.334 |
| S10 |
C09 |
1.617 |
1.759 |
| C11 |
S10 |
1.617 |
1.759 |
| C06 |
N05 |
1.236 |
1.469 |
| C12 |
N05 |
1.452 |
1.468 |
| C13 |
C12 |
1.531 |
1.531 |
| C02 |
C13 |
1.440 |
1.530 |
| C07 |
C11 |
1.432 |
1.334 |
| C13 |
H131 |
1.100 |
1.090 |
| C13 |
H132 |
1.100 |
1.090 |
| C02 |
H021 |
1.100 |
1.090 |
| C03 |
H031 |
1.100 |
1.090 |
| C03 |
H032 |
1.099 |
1.090 |
| C04 |
H041 |
1.100 |
1.090 |
| C04 |
H042 |
1.100 |
1.090 |
| C06 |
H061 |
1.100 |
1.090 |
| C06 |
H062 |
1.100 |
1.090 |
| C08 |
H081 |
1.080 |
1.080 |
| C09 |
H091 |
1.080 |
1.079 |
| C11 |
H111 |
1.080 |
1.080 |
| C12 |
H121 |
1.100 |
1.091 |
| C12 |
H122 |
1.100 |
1.090 |
| O01 |
H011 |
0.950 |
0.968 |
Bond Angles for T0Y
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C03 |
C02 |
O01 |
109.3 |
109.5 |
| O01 |
C02 |
H021 |
108.5 |
109.5 |
| C02 |
O01 |
H011 |
109.5 |
114.0 |
| C03 |
C02 |
H021 |
108.1 |
109.6 |
| C04 |
C03 |
H031 |
108.3 |
109.5 |
| C04 |
C03 |
H032 |
108.3 |
109.6 |
| N05 |
C04 |
H041 |
108.0 |
109.5 |
| N05 |
C04 |
H042 |
108.0 |
109.5 |
| C07 |
C06 |
N05 |
115.4 |
109.5 |
| C07 |
C06 |
H061 |
108.0 |
109.5 |
| C07 |
C06 |
H062 |
108.0 |
109.5 |
| C08 |
C07 |
C11 |
109.1 |
115.0 |
| C09 |
C08 |
H081 |
125.0 |
122.5 |
| S10 |
C09 |
H091 |
125.0 |
125.2 |
| C07 |
C11 |
S10 |
110.5 |
109.6 |
| S10 |
C11 |
H111 |
124.7 |
125.2 |
| C06 |
N05 |
C12 |
109.6 |
111.0 |
| N05 |
C06 |
H061 |
108.0 |
109.4 |
| N05 |
C06 |
H062 |
108.0 |
109.5 |
| C13 |
C12 |
N05 |
113.5 |
109.5 |
| N05 |
C12 |
H121 |
108.5 |
109.5 |
| N05 |
C12 |
H122 |
108.5 |
109.5 |
| C02 |
C13 |
C12 |
112.9 |
109.3 |
| C12 |
C13 |
H131 |
108.6 |
109.5 |
| C12 |
C13 |
H132 |
108.6 |
109.5 |
| C13 |
C12 |
H121 |
108.4 |
109.4 |
| C13 |
C12 |
H122 |
108.5 |
109.4 |
| C02 |
C13 |
H131 |
108.6 |
109.5 |
| C02 |
C13 |
H132 |
108.6 |
109.5 |
| C07 |
C11 |
H111 |
124.7 |
125.2 |
| H131 |
C13 |
H132 |
109.5 |
109.5 |
| H031 |
C03 |
H032 |
109.4 |
109.5 |
| H041 |
C04 |
H042 |
109.5 |
109.5 |
| H061 |
C06 |
H062 |
109.5 |
109.5 |
| H121 |
C12 |
H122 |
109.5 |
109.4 |
Torsion Angles for T0Y
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C03 |
C02 |
O01 |
H021 |
242.4 |
239.8 |
| O01 |
C02 |
C13 |
C12 |
70.7 |
62.2 |
| O01 |
C02 |
C13 |
H131 |
310.2 |
182.2 |
| O01 |
C02 |
C13 |
H132 |
191.2 |
302.3 |
| O01 |
C02 |
C03 |
H021 |
117.9 |
120.1 |
| C03 |
C02 |
O01 |
H011 |
180.0 |
299.7 |
| C03 |
C02 |
C13 |
C12 |
308.4 |
302.3 |
| C03 |
C02 |
C13 |
H131 |
187.8 |
62.3 |
| C03 |
C02 |
C13 |
H132 |
68.9 |
182.4 |
| C04 |
C03 |
C02 |
O01 |
284.3 |
297.8 |
| C04 |
C03 |
C02 |
H021 |
166.4 |
177.7 |
| H031 |
C03 |
C04 |
H032 |
118.6 |
120.1 |
| N05 |
C04 |
C03 |
H031 |
190.7 |
180.9 |
| N05 |
C04 |
C03 |
H032 |
72.2 |
60.8 |
| C13 |
C12 |
N05 |
C04 |
307.9 |
298.2 |
| H041 |
C04 |
N05 |
H042 |
118.3 |
120.0 |
| C07 |
C06 |
N05 |
C12 |
168.0 |
190.0 |
| N05 |
C06 |
C07 |
H061 |
239.1 |
240.1 |
| N05 |
C06 |
C07 |
H062 |
120.9 |
120.0 |
| H061 |
C06 |
C07 |
H062 |
241.8 |
239.9 |
| C08 |
C07 |
C06 |
N05 |
233.2 |
270.3 |
| C08 |
C07 |
C06 |
H061 |
354.0 |
30.2 |
| C08 |
C07 |
C06 |
H062 |
112.3 |
150.3 |
| C08 |
C07 |
C11 |
S10 |
0.2 |
359.6 |
| C08 |
C07 |
C11 |
H111 |
180.2 |
179.7 |
| C09 |
C08 |
C07 |
C11 |
359.7 |
0.3 |
| S10 |
C09 |
C08 |
H081 |
180.4 |
180.0 |
| C07 |
C11 |
S10 |
C09 |
0.0 |
0.3 |
| C11 |
S10 |
C09 |
H091 |
179.8 |
179.8 |
| C07 |
C11 |
S10 |
H111 |
180.0 |
180.1 |
| C06 |
N05 |
C04 |
H041 |
51.2 |
65.9 |
| C06 |
N05 |
C04 |
H042 |
292.9 |
305.8 |
| C07 |
C06 |
N05 |
H061 |
120.9 |
120.0 |
| C07 |
C06 |
N05 |
H062 |
239.1 |
240.0 |
| C13 |
C12 |
N05 |
C06 |
182.1 |
174.1 |
| C06 |
N05 |
C12 |
H121 |
302.7 |
54.1 |
| C06 |
N05 |
C12 |
H122 |
61.5 |
294.2 |
| H061 |
C06 |
N05 |
H062 |
118.2 |
120.1 |
| C12 |
N05 |
C04 |
H041 |
288.0 |
301.7 |
| C12 |
N05 |
C04 |
H042 |
169.7 |
181.7 |
| C12 |
N05 |
C06 |
H061 |
47.2 |
70.0 |
| C12 |
N05 |
C06 |
H062 |
288.9 |
310.0 |
| C02 |
C13 |
C12 |
N05 |
55.6 |
59.2 |
| N05 |
C12 |
C13 |
H131 |
176.2 |
299.2 |
| N05 |
C12 |
C13 |
H132 |
295.1 |
179.2 |
| C13 |
C12 |
N05 |
H121 |
239.4 |
120.0 |
| C13 |
C12 |
N05 |
H122 |
120.6 |
240.0 |
| H121 |
C12 |
N05 |
H122 |
241.2 |
120.0 |
| C06 |
N05 |
C12 |
C13 |
182.1 |
174.1 |
| N05 |
C12 |
C13 |
H121 |
120.6 |
240.0 |
| N05 |
C12 |
C13 |
H122 |
239.4 |
120.1 |
| C02 |
C13 |
C12 |
H131 |
239.5 |
120.0 |
| C02 |
C13 |
C12 |
H132 |
120.5 |
240.0 |
| H131 |
C13 |
C12 |
H132 |
241.0 |
120.1 |
| H121 |
C12 |
C13 |
H122 |
118.8 |
240.1 |
| C12 |
C13 |
C02 |
H131 |
120.5 |
240.0 |
| C12 |
C13 |
C02 |
H132 |
239.5 |
120.0 |
| C02 |
C13 |
C12 |
H121 |
295.0 |
179.2 |
| C02 |
C13 |
C12 |
H122 |
176.3 |
299.1 |
| H131 |
C13 |
C02 |
H132 |
118.9 |
239.9 |
| C11 |
C07 |
C06 |
N05 |
53.1 |
90.0 |
| C11 |
C07 |
C06 |
H061 |
174.0 |
209.9 |
| C11 |
C07 |
C06 |
H062 |
292.2 |
330.0 |
| S10 |
C11 |
C07 |
H111 |
180.0 |
179.9 |
| H131 |
C13 |
C12 |
N05 |
176.2 |
299.2 |
| C02 |
C13 |
H131 |
C12 |
123.2 |
240.2 |
| C12 |
C13 |
H131 |
H132 |
118.4 |
239.9 |
| H131 |
C13 |
C12 |
H121 |
55.6 |
59.3 |
| H131 |
C13 |
C12 |
H122 |
296.8 |
179.2 |
| C02 |
C13 |
H131 |
H132 |
241.6 |
120.1 |
| H132 |
C13 |
C12 |
N05 |
295.1 |
179.2 |
| C02 |
C13 |
H132 |
C12 |
236.8 |
119.8 |
| C12 |
C13 |
H132 |
H131 |
241.6 |
120.1 |
| H132 |
C13 |
C12 |
H121 |
174.5 |
299.2 |
| H132 |
C13 |
C12 |
H122 |
55.8 |
59.1 |
| C02 |
C13 |
H132 |
H131 |
118.4 |
239.9 |
| C03 |
C02 |
H021 |
O01 |
118.4 |
120.1 |
| H021 |
C02 |
O01 |
H011 |
297.6 |
59.8 |
| H021 |
C02 |
C13 |
C12 |
190.0 |
182.4 |
| H021 |
C02 |
C13 |
H131 |
69.5 |
302.3 |
| H021 |
C02 |
C13 |
H132 |
310.5 |
62.4 |
| H031 |
C03 |
C02 |
O01 |
45.0 |
57.7 |
| H031 |
C03 |
C02 |
H021 |
287.1 |
297.6 |
| C04 |
C03 |
H031 |
H032 |
242.2 |
239.8 |
| H032 |
C03 |
C02 |
O01 |
163.6 |
177.7 |
| H032 |
C03 |
C02 |
H021 |
45.7 |
57.6 |
| C04 |
C03 |
H032 |
H031 |
117.8 |
120.1 |
| H041 |
C04 |
C03 |
H031 |
311.6 |
300.9 |
| H041 |
C04 |
C03 |
H032 |
193.0 |
180.8 |
| N05 |
C04 |
H041 |
H042 |
242.7 |
240.0 |
| H042 |
C04 |
C03 |
H031 |
69.9 |
60.9 |
| H042 |
C04 |
C03 |
H032 |
311.3 |
300.8 |
| N05 |
C04 |
H042 |
H041 |
117.3 |
120.0 |
| C07 |
C06 |
H061 |
N05 |
234.6 |
240.0 |
| C07 |
C06 |
H061 |
H062 |
117.3 |
120.0 |
| H061 |
C06 |
N05 |
C12 |
47.2 |
70.0 |
| N05 |
C06 |
H061 |
H062 |
242.7 |
240.0 |
| C07 |
C06 |
H062 |
N05 |
125.4 |
120.0 |
| C07 |
C06 |
H062 |
H061 |
242.7 |
240.0 |
| H062 |
C06 |
N05 |
C12 |
288.9 |
310.0 |
| N05 |
C06 |
H062 |
H061 |
117.3 |
120.0 |
| H081 |
C08 |
C07 |
C11 |
179.7 |
180.2 |
| H091 |
C09 |
C08 |
H081 |
0.3 |
0.0 |
| C07 |
C11 |
H111 |
S10 |
180.0 |
179.9 |
| C13 |
C12 |
H121 |
N05 |
123.7 |
239.9 |
| N05 |
C12 |
H121 |
H122 |
118.2 |
240.0 |
| H121 |
C12 |
C13 |
H131 |
55.6 |
59.3 |
| H121 |
C12 |
C13 |
H132 |
174.5 |
299.2 |
| C13 |
C12 |
H121 |
H122 |
241.9 |
119.9 |
| C13 |
C12 |
H122 |
N05 |
236.3 |
120.1 |
| N05 |
C12 |
H122 |
H121 |
241.8 |
120.0 |
| H122 |
C12 |
C13 |
H131 |
296.8 |
179.2 |
| H122 |
C12 |
C13 |
H132 |
55.8 |
59.1 |
| C13 |
C12 |
H122 |
H121 |
118.1 |
240.1 |
| H011 |
O01 |
C02 |
H021 |
297.6 |
59.8 |