Atom Nomenclature for T0V

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for T0V

Atom Name (V3) Atom Name (V2)
C10 C1
C13 C2
C15 C3
C02 C4
C03 C5
C04 C6
C05 C7
C06 C8
C07 C9
C09 C10
C11 C11
C12 C12
F01 F1
N08 N1
O14 O1
H131 H1
H151 H2
H031 H3
H041 H4
H051 H5
H072 H6
H071 H7
H092 H8
H091 H9
H111 H10
H121 H11
H1 H12