Atom Nomenclature for T0S

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for T0S

Atom Name (V3) Atom Name (V2)
C10 C1
C01 C2
C02 C3
C05 C4
C06 C5
C07 C6
C08 C7
C09 C8
C11 C9
N04 N1
N15 N2
O03 O1
O13 O2
O14 O3
S12 S1
H101 H1
H013 H2
H011 H3
H012 H4
H051 H5
H052 H6
H071 H7
H081 H8
H111 H9
H041 H10
H152 H11
H151 H12