PDB Chemical Component T0M
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for T0M
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
HG3 |
C2 |
2.355 |
2.099 |
HG3 |
S |
|
2.350 |
C2 |
C1 |
1.502 |
1.530 |
C2 |
H21C |
1.100 |
1.090 |
C2 |
H22C |
1.100 |
1.090 |
C1 |
H11C |
1.100 |
1.090 |
C1 |
H12C |
1.100 |
1.090 |
C1 |
H13C |
1.099 |
1.090 |
C3 |
C4 |
|
1.405 |
C4 |
C5 |
|
1.398 |
C5 |
C6 |
|
1.377 |
C6 |
C7 |
|
1.386 |
C7 |
C8 |
|
1.379 |
C8 |
C3 |
|
1.390 |
S |
C3 |
|
1.762 |
C4 |
C9 |
|
1.473 |
C9 |
O1 |
|
1.216 |
C9 |
O2 |
|
1.348 |
H |
O2 |
|
0.967 |
C5 |
H1 |
|
1.080 |
C6 |
H2 |
|
1.080 |
C7 |
H3 |
|
1.080 |
C8 |
H4 |
|
1.080 |
Bond Angles for T0M
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
HG3 |
S |
|
180.0 |
HG3 |
C2 |
C1 |
105.4 |
109.5 |
HG3 |
C2 |
H21C |
110.5 |
109.5 |
HG3 |
C2 |
H22C |
110.5 |
109.5 |
HG3 |
S |
C3 |
|
100.0 |
C1 |
C2 |
H21C |
110.5 |
109.5 |
C1 |
C2 |
H22C |
110.5 |
109.4 |
C2 |
C1 |
H11C |
109.5 |
109.4 |
C2 |
C1 |
H12C |
109.5 |
109.5 |
C2 |
C1 |
H13C |
109.5 |
109.5 |
H21C |
C2 |
H22C |
109.5 |
109.4 |
H11C |
C1 |
H12C |
109.5 |
109.4 |
H11C |
C1 |
H13C |
109.5 |
109.4 |
H12C |
C1 |
H13C |
109.5 |
109.5 |
C3 |
C4 |
C5 |
|
119.6 |
S |
C3 |
C4 |
|
120.2 |
C3 |
C4 |
C9 |
|
120.2 |
C4 |
C5 |
C6 |
|
119.9 |
C5 |
C4 |
C9 |
|
120.2 |
C4 |
C5 |
H1 |
|
120.0 |
C5 |
C6 |
C7 |
|
120.4 |
C6 |
C5 |
H1 |
|
120.1 |
C5 |
C6 |
H2 |
|
119.8 |
C6 |
C7 |
C8 |
|
120.5 |
C7 |
C6 |
H2 |
|
119.8 |
C6 |
C7 |
H3 |
|
119.8 |
C8 |
C7 |
H3 |
|
119.7 |
C7 |
C8 |
H4 |
|
120.0 |
C4 |
C9 |
O1 |
|
120.0 |
C4 |
C9 |
O2 |
|
120.0 |
O1 |
C9 |
O2 |
|
120.0 |
Torsion Angles for T0M
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
HG3 |
S |
C3 |
|
232.4 |
C1 |
C2 |
HG3 |
H21C |
240.7 |
239.9 |
C1 |
C2 |
HG3 |
H22C |
119.4 |
120.0 |
HG3 |
C2 |
C1 |
H11C |
180.0 |
60.0 |
HG3 |
C2 |
C1 |
H12C |
300.0 |
180.0 |
HG3 |
C2 |
C1 |
H13C |
60.0 |
300.1 |
H21C |
C2 |
HG3 |
H22C |
238.7 |
240.0 |
S |
HG3 |
C2 |
C1 |
|
307.5 |
S |
HG3 |
C2 |
H21C |
|
67.6 |
S |
HG3 |
C2 |
H22C |
|
187.6 |
HG3 |
S |
C3 |
C4 |
|
90.0 |
C1 |
C2 |
HG3 |
S |
|
307.5 |
HG3 |
C2 |
C1 |
H21C |
119.4 |
120.1 |
HG3 |
C2 |
C1 |
H22C |
240.6 |
240.0 |
H21C |
C2 |
C1 |
H22C |
121.3 |
120.0 |
H11C |
C1 |
C2 |
H12C |
240.0 |
240.0 |
H11C |
C1 |
C2 |
H13C |
120.0 |
120.0 |
H12C |
C1 |
C2 |
H13C |
240.0 |
239.9 |
H21C |
C2 |
HG3 |
S |
|
67.6 |
HG3 |
C2 |
H21C |
C1 |
243.7 |
239.9 |
HG3 |
C2 |
H21C |
H22C |
121.9 |
120.0 |
C1 |
C2 |
H21C |
H22C |
238.1 |
240.0 |
H21C |
C2 |
C1 |
H11C |
60.7 |
300.0 |
H21C |
C2 |
C1 |
H12C |
180.6 |
59.9 |
H21C |
C2 |
C1 |
H13C |
300.6 |
180.0 |
H22C |
C2 |
HG3 |
S |
|
187.6 |
HG3 |
C2 |
H22C |
C1 |
116.3 |
120.0 |
HG3 |
C2 |
H22C |
H21C |
238.1 |
240.0 |
C1 |
C2 |
H22C |
H21C |
121.9 |
120.0 |
H22C |
C2 |
C1 |
H11C |
299.4 |
180.0 |
H22C |
C2 |
C1 |
H12C |
59.4 |
300.0 |
H22C |
C2 |
C1 |
H13C |
179.4 |
60.0 |
H11C |
C1 |
C2 |
H21C |
60.7 |
300.0 |
H11C |
C1 |
C2 |
H22C |
299.4 |
180.0 |
C2 |
C1 |
H11C |
H12C |
120.0 |
120.0 |
C2 |
C1 |
H11C |
H13C |
240.0 |
240.0 |
H12C |
C1 |
H11C |
H13C |
120.0 |
120.0 |
H12C |
C1 |
C2 |
H21C |
180.6 |
59.9 |
H12C |
C1 |
C2 |
H22C |
59.4 |
300.0 |
C2 |
C1 |
H12C |
H11C |
240.0 |
240.0 |
C2 |
C1 |
H12C |
H13C |
120.0 |
120.1 |
H11C |
C1 |
H12C |
H13C |
240.0 |
240.0 |
H13C |
C1 |
C2 |
H21C |
300.6 |
180.0 |
H13C |
C1 |
C2 |
H22C |
179.4 |
60.0 |
C2 |
C1 |
H13C |
H11C |
120.0 |
120.0 |
C2 |
C1 |
H13C |
H12C |
240.0 |
239.9 |
H11C |
C1 |
H13C |
H12C |
120.0 |
120.0 |
C3 |
C4 |
C5 |
C6 |
|
360.0 |
C5 |
C4 |
C3 |
C9 |
|
180.0 |
C3 |
C4 |
C5 |
H1 |
|
180.0 |
C3 |
C4 |
C9 |
O1 |
|
0.0 |
C3 |
C4 |
C9 |
O2 |
|
180.0 |
S |
C3 |
C4 |
C5 |
|
180.0 |
C3 |
C4 |
C5 |
C9 |
|
180.0 |
C4 |
C5 |
C6 |
C7 |
|
360.0 |
C6 |
C5 |
C4 |
H1 |
|
180.0 |
C4 |
C5 |
C6 |
H2 |
|
180.0 |
C5 |
C4 |
C9 |
O1 |
|
180.0 |
C5 |
C4 |
C9 |
O2 |
|
360.0 |
C6 |
C5 |
C4 |
C9 |
|
180.0 |
C4 |
C5 |
C6 |
H1 |
|
180.0 |
C5 |
C6 |
C7 |
C8 |
|
359.8 |
C7 |
C6 |
C5 |
H2 |
|
180.0 |
C5 |
C6 |
C7 |
H3 |
|
180.0 |
C7 |
C6 |
C5 |
H1 |
|
180.0 |
C5 |
C6 |
C7 |
H2 |
|
180.0 |
C8 |
C7 |
C6 |
H3 |
|
179.8 |
C6 |
C7 |
C8 |
H4 |
|
180.0 |
C8 |
C7 |
C6 |
H2 |
|
179.8 |
C6 |
C7 |
C8 |
H3 |
|
180.2 |
C8 |
C3 |
C4 |
C9 |
|
180.2 |
S |
C3 |
C4 |
C9 |
|
360.0 |
C3 |
C4 |
C9 |
C5 |
|
180.0 |
C9 |
C4 |
C5 |
C6 |
|
180.0 |
C9 |
C4 |
C5 |
H1 |
|
0.0 |
O1 |
C9 |
C4 |
O2 |
|
180.0 |
C4 |
C9 |
O1 |
O2 |
|
180.0 |
C4 |
C9 |
O2 |
O1 |
|
180.0 |
C4 |
C5 |
H1 |
C6 |
|
180.0 |
H1 |
C5 |
C4 |
C9 |
|
0.0 |
H1 |
C5 |
C6 |
C7 |
|
180.0 |
H1 |
C5 |
C6 |
H2 |
|
0.0 |
C5 |
C6 |
H2 |
C7 |
|
180.0 |
H2 |
C6 |
C5 |
H1 |
|
0.0 |
H2 |
C6 |
C7 |
C8 |
|
179.8 |
H2 |
C6 |
C7 |
H3 |
|
359.9 |
C6 |
C7 |
H3 |
C8 |
|
179.8 |
H3 |
C7 |
C6 |
H2 |
|
359.9 |
H3 |
C7 |
C8 |
H4 |
|
359.8 |
H4 |
C8 |
C7 |
H3 |
|
359.8 |