PDB Chemical Component T0M

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for T0M

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
HG3 C2 2.355 2.099
HG3 S   2.350
C2 C1 1.502 1.530
C2 H21C 1.100 1.090
C2 H22C 1.100 1.090
C1 H11C 1.100 1.090
C1 H12C 1.100 1.090
C1 H13C 1.099 1.090
C3 C4   1.405
C4 C5   1.398
C5 C6   1.377
C6 C7   1.386
C7 C8   1.379
C8 C3   1.390
S C3   1.762
C4 C9   1.473
C9 O1   1.216
C9 O2   1.348
H O2   0.967
C5 H1   1.080
C6 H2   1.080
C7 H3   1.080
C8 H4   1.080

Bond Angles for T0M

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 HG3 S   180.0
HG3 C2 C1 105.4 109.5
HG3 C2 H21C 110.5 109.5
HG3 C2 H22C 110.5 109.5
HG3 S C3   100.0
C1 C2 H21C 110.5 109.5
C1 C2 H22C 110.5 109.4
C2 C1 H11C 109.5 109.4
C2 C1 H12C 109.5 109.5
C2 C1 H13C 109.5 109.5
H21C C2 H22C 109.5 109.4
H11C C1 H12C 109.5 109.4
H11C C1 H13C 109.5 109.4
H12C C1 H13C 109.5 109.5
C3 C4 C5   119.6
S C3 C4   120.2
C3 C4 C9   120.2
C4 C5 C6   119.9
C5 C4 C9   120.2
C4 C5 H1   120.0
C5 C6 C7   120.4
C6 C5 H1   120.1
C5 C6 H2   119.8
C6 C7 C8   120.5
C7 C6 H2   119.8
C6 C7 H3   119.8
C8 C7 H3   119.7
C7 C8 H4   120.0
C4 C9 O1   120.0
C4 C9 O2   120.0
O1 C9 O2   120.0

Torsion Angles for T0M

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 HG3 S C3   232.4
C1 C2 HG3 H21C 240.7 239.9
C1 C2 HG3 H22C 119.4 120.0
HG3 C2 C1 H11C 180.0 60.0
HG3 C2 C1 H12C 300.0 180.0
HG3 C2 C1 H13C 60.0 300.1
H21C C2 HG3 H22C 238.7 240.0
S HG3 C2 C1   307.5
S HG3 C2 H21C   67.6
S HG3 C2 H22C   187.6
HG3 S C3 C4   90.0
C1 C2 HG3 S   307.5
HG3 C2 C1 H21C 119.4 120.1
HG3 C2 C1 H22C 240.6 240.0
H21C C2 C1 H22C 121.3 120.0
H11C C1 C2 H12C 240.0 240.0
H11C C1 C2 H13C 120.0 120.0
H12C C1 C2 H13C 240.0 239.9
H21C C2 HG3 S   67.6
HG3 C2 H21C C1 243.7 239.9
HG3 C2 H21C H22C 121.9 120.0
C1 C2 H21C H22C 238.1 240.0
H21C C2 C1 H11C 60.7 300.0
H21C C2 C1 H12C 180.6 59.9
H21C C2 C1 H13C 300.6 180.0
H22C C2 HG3 S   187.6
HG3 C2 H22C C1 116.3 120.0
HG3 C2 H22C H21C 238.1 240.0
C1 C2 H22C H21C 121.9 120.0
H22C C2 C1 H11C 299.4 180.0
H22C C2 C1 H12C 59.4 300.0
H22C C2 C1 H13C 179.4 60.0
H11C C1 C2 H21C 60.7 300.0
H11C C1 C2 H22C 299.4 180.0
C2 C1 H11C H12C 120.0 120.0
C2 C1 H11C H13C 240.0 240.0
H12C C1 H11C H13C 120.0 120.0
H12C C1 C2 H21C 180.6 59.9
H12C C1 C2 H22C 59.4 300.0
C2 C1 H12C H11C 240.0 240.0
C2 C1 H12C H13C 120.0 120.1
H11C C1 H12C H13C 240.0 240.0
H13C C1 C2 H21C 300.6 180.0
H13C C1 C2 H22C 179.4 60.0
C2 C1 H13C H11C 120.0 120.0
C2 C1 H13C H12C 240.0 239.9
H11C C1 H13C H12C 120.0 120.0
C3 C4 C5 C6   360.0
C5 C4 C3 C9   180.0
C3 C4 C5 H1   180.0
C3 C4 C9 O1   0.0
C3 C4 C9 O2   180.0
S C3 C4 C5   180.0
C3 C4 C5 C9   180.0
C4 C5 C6 C7   360.0
C6 C5 C4 H1   180.0
C4 C5 C6 H2   180.0
C5 C4 C9 O1   180.0
C5 C4 C9 O2   360.0
C6 C5 C4 C9   180.0
C4 C5 C6 H1   180.0
C5 C6 C7 C8   359.8
C7 C6 C5 H2   180.0
C5 C6 C7 H3   180.0
C7 C6 C5 H1   180.0
C5 C6 C7 H2   180.0
C8 C7 C6 H3   179.8
C6 C7 C8 H4   180.0
C8 C7 C6 H2   179.8
C6 C7 C8 H3   180.2
C8 C3 C4 C9   180.2
S C3 C4 C9   360.0
C3 C4 C9 C5   180.0
C9 C4 C5 C6   180.0
C9 C4 C5 H1   0.0
O1 C9 C4 O2   180.0
C4 C9 O1 O2   180.0
C4 C9 O2 O1   180.0
C4 C5 H1 C6   180.0
H1 C5 C4 C9   0.0
H1 C5 C6 C7   180.0
H1 C5 C6 H2   0.0
C5 C6 H2 C7   180.0
H2 C6 C5 H1   0.0
H2 C6 C7 C8   179.8
H2 C6 C7 H3   359.9
C6 C7 H3 C8   179.8
H3 C7 C6 H2   359.9
H3 C7 C8 H4   359.8
H4 C8 C7 H3   359.8