PDB Chemical Component T07
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for T07
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
S |
C4 |
1.810 |
1.814 |
S |
C9 |
1.759 |
1.762 |
C1 |
CL2 |
1.744 |
1.736 |
C1 |
C5 |
1.392 |
1.383 |
C1 |
C7 |
1.344 |
1.384 |
N1 |
C8 |
1.352 |
1.365 |
N1 |
C9 |
1.350 |
1.367 |
CL1 |
C2 |
1.801 |
1.735 |
C2 |
C3 |
1.347 |
1.384 |
C2 |
C5 |
1.397 |
1.384 |
N2 |
N4 |
1.407 |
1.401 |
N2 |
C8 |
1.325 |
1.311 |
C3 |
C4 |
1.522 |
1.508 |
C3 |
C6 |
1.401 |
1.382 |
N3 |
C8 |
1.374 |
1.390 |
N4 |
C9 |
1.336 |
1.312 |
C6 |
C7 |
1.354 |
1.382 |
N1 |
HN1 |
1.000 |
0.971 |
N3 |
HN3 |
1.000 |
0.970 |
N3 |
HN3A |
1.000 |
0.969 |
C4 |
H4 |
1.100 |
1.090 |
C4 |
H4A |
1.100 |
1.089 |
C5 |
H5 |
1.080 |
1.080 |
C6 |
H6 |
1.080 |
1.080 |
C7 |
H7 |
1.080 |
1.081 |
Bond Angles for T07
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C4 |
S |
C9 |
95.8 |
103.0 |
S |
C4 |
C3 |
117.6 |
109.5 |
S |
C4 |
H4 |
106.9 |
109.5 |
S |
C4 |
H4A |
106.8 |
109.5 |
S |
C9 |
N1 |
123.2 |
126.1 |
S |
C9 |
N4 |
122.3 |
126.0 |
CL2 |
C1 |
C5 |
115.0 |
120.0 |
CL2 |
C1 |
C7 |
122.8 |
120.0 |
C5 |
C1 |
C7 |
121.7 |
119.9 |
C1 |
C5 |
C2 |
114.3 |
120.0 |
C1 |
C5 |
H5 |
122.8 |
120.0 |
C1 |
C7 |
C6 |
122.2 |
120.1 |
C1 |
C7 |
H7 |
118.9 |
120.0 |
C8 |
N1 |
C9 |
104.2 |
108.1 |
N1 |
C8 |
N2 |
109.5 |
108.0 |
N1 |
C8 |
N3 |
126.3 |
126.0 |
C8 |
N1 |
HN1 |
127.9 |
126.0 |
N1 |
C9 |
N4 |
114.5 |
107.9 |
C9 |
N1 |
HN1 |
127.9 |
125.9 |
CL1 |
C2 |
C3 |
120.7 |
120.0 |
CL1 |
C2 |
C5 |
114.9 |
120.0 |
C3 |
C2 |
C5 |
124.2 |
119.9 |
C2 |
C3 |
C4 |
119.8 |
120.0 |
C2 |
C3 |
C6 |
118.5 |
120.1 |
C2 |
C5 |
H5 |
122.8 |
120.0 |
N4 |
N2 |
C8 |
110.0 |
108.0 |
N2 |
N4 |
C9 |
101.7 |
108.0 |
N2 |
C8 |
N3 |
124.2 |
125.9 |
C4 |
C3 |
C6 |
121.7 |
120.0 |
C3 |
C4 |
H4 |
106.8 |
109.5 |
C3 |
C4 |
H4A |
106.9 |
109.5 |
C3 |
C6 |
C7 |
118.1 |
120.0 |
C3 |
C6 |
H6 |
121.0 |
120.0 |
C8 |
N3 |
HN3 |
109.5 |
119.9 |
C8 |
N3 |
HN3A |
109.5 |
120.0 |
C7 |
C6 |
H6 |
120.9 |
120.0 |
C6 |
C7 |
H7 |
118.9 |
119.9 |
HN3 |
N3 |
HN3A |
109.5 |
120.1 |
H4 |
C4 |
H4A |
111.9 |
109.5 |
Torsion Angles for T07
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C4 |
S |
C9 |
N1 |
317.5 |
180.0 |
C4 |
S |
C9 |
N4 |
137.9 |
360.0 |
C2 |
C3 |
C4 |
S |
145.8 |
90.0 |
S |
C4 |
C3 |
C6 |
327.5 |
270.3 |
C3 |
C4 |
S |
H4 |
240.0 |
240.0 |
C3 |
C4 |
S |
H4A |
120.0 |
120.0 |
H4 |
C4 |
S |
H4A |
240.0 |
240.0 |
C9 |
S |
C4 |
C3 |
290.7 |
180.0 |
C9 |
S |
C4 |
H4 |
50.7 |
300.0 |
C9 |
S |
C4 |
H4A |
170.7 |
60.0 |
C8 |
N1 |
C9 |
S |
177.6 |
179.9 |
N1 |
C9 |
S |
N4 |
179.6 |
180.0 |
S |
C9 |
N1 |
HN1 |
357.6 |
0.2 |
N2 |
N4 |
C9 |
S |
182.3 |
180.1 |
C5 |
C1 |
CL2 |
C7 |
188.1 |
180.3 |
CL2 |
C1 |
C5 |
C2 |
181.8 |
180.0 |
CL2 |
C1 |
C5 |
H5 |
1.8 |
359.9 |
CL2 |
C1 |
C7 |
C6 |
180.1 |
180.0 |
CL2 |
C1 |
C7 |
H7 |
0.1 |
0.1 |
CL2 |
C1 |
C5 |
C7 |
172.0 |
179.7 |
C5 |
C1 |
C7 |
C6 |
351.5 |
359.7 |
C5 |
C1 |
C7 |
H7 |
171.5 |
179.7 |
CL1 |
C2 |
C5 |
C1 |
181.3 |
180.0 |
C3 |
C2 |
C5 |
C1 |
356.9 |
360.0 |
C2 |
C5 |
C1 |
H5 |
180.0 |
180.1 |
CL2 |
C1 |
C7 |
C5 |
188.6 |
180.3 |
C7 |
C1 |
C5 |
C2 |
9.7 |
0.3 |
C7 |
C1 |
C5 |
H5 |
189.7 |
180.3 |
C3 |
C6 |
C7 |
C1 |
360.0 |
0.0 |
C1 |
C7 |
C6 |
H6 |
179.9 |
180.3 |
C6 |
C7 |
C1 |
H7 |
180.0 |
179.9 |
S |
C9 |
N1 |
C8 |
177.6 |
179.9 |
C8 |
N1 |
C9 |
N4 |
357.3 |
359.9 |
C9 |
N1 |
C8 |
HN1 |
180.0 |
180.3 |
N4 |
N2 |
C8 |
N1 |
0.0 |
0.0 |
N2 |
C8 |
N1 |
N3 |
181.0 |
180.0 |
N1 |
C8 |
N3 |
HN3 |
181.2 |
0.0 |
N1 |
C8 |
N3 |
HN3A |
301.2 |
180.1 |
S |
C9 |
N1 |
N4 |
180.3 |
180.0 |
C9 |
N1 |
C8 |
N2 |
1.5 |
0.0 |
C9 |
N1 |
C8 |
N3 |
180.5 |
180.0 |
C8 |
N1 |
C9 |
HN1 |
180.0 |
179.7 |
N2 |
N4 |
C9 |
N1 |
2.6 |
0.1 |
C1 |
C5 |
C2 |
CL1 |
181.3 |
180.0 |
C3 |
C2 |
CL1 |
C5 |
184.2 |
180.0 |
CL1 |
C2 |
C3 |
C4 |
352.2 |
0.0 |
CL1 |
C2 |
C3 |
C6 |
170.6 |
179.7 |
CL1 |
C2 |
C5 |
H5 |
1.2 |
0.1 |
S |
C4 |
C3 |
C2 |
145.8 |
90.0 |
C1 |
C5 |
C2 |
C3 |
356.9 |
360.0 |
CL1 |
C2 |
C3 |
C5 |
175.4 |
180.0 |
C3 |
C2 |
C5 |
H5 |
176.9 |
180.1 |
C4 |
C3 |
C2 |
C6 |
181.6 |
180.3 |
C2 |
C3 |
C4 |
H4 |
25.8 |
330.0 |
C2 |
C3 |
C4 |
H4A |
265.8 |
210.0 |
C2 |
C3 |
C6 |
C7 |
6.4 |
0.3 |
C2 |
C3 |
C6 |
H6 |
186.5 |
180.0 |
C2 |
C5 |
C1 |
C7 |
9.7 |
0.3 |
C1 |
C5 |
C2 |
H5 |
180.0 |
179.9 |
CL1 |
C2 |
C5 |
C3 |
184.4 |
180.0 |
C5 |
C2 |
C3 |
C4 |
176.8 |
180.0 |
C5 |
C2 |
C3 |
C6 |
355.2 |
359.7 |
S |
C9 |
N4 |
N2 |
182.3 |
180.1 |
N1 |
C8 |
N2 |
N4 |
0.0 |
0.0 |
N1 |
C9 |
N4 |
N2 |
2.6 |
0.1 |
N4 |
N2 |
C8 |
N3 |
181.0 |
180.0 |
N2 |
C8 |
N1 |
C9 |
1.5 |
0.0 |
N1 |
C8 |
N2 |
N3 |
179.0 |
180.0 |
N2 |
C8 |
N1 |
HN1 |
181.6 |
179.7 |
C8 |
N2 |
N4 |
C9 |
358.5 |
360.0 |
N2 |
C8 |
N3 |
HN3 |
360.0 |
180.0 |
N2 |
C8 |
N3 |
HN3A |
120.0 |
0.0 |
C3 |
C4 |
S |
C9 |
290.7 |
180.0 |
S |
C4 |
C3 |
H4 |
120.0 |
120.0 |
S |
C4 |
C3 |
H4A |
240.0 |
240.0 |
C4 |
C3 |
C2 |
C5 |
176.8 |
180.0 |
C2 |
C3 |
C4 |
C6 |
178.3 |
179.7 |
C4 |
C3 |
C6 |
C7 |
184.8 |
180.0 |
C4 |
C3 |
C6 |
H6 |
4.8 |
359.7 |
H4 |
C4 |
C3 |
H4A |
120.0 |
120.0 |
C1 |
C7 |
C6 |
C3 |
360.0 |
0.0 |
C6 |
C3 |
C2 |
C5 |
355.2 |
359.7 |
C2 |
C3 |
C6 |
C4 |
181.7 |
180.3 |
C6 |
C3 |
C4 |
H4 |
207.5 |
150.3 |
C6 |
C3 |
C4 |
H4A |
87.5 |
30.3 |
C7 |
C6 |
C3 |
H6 |
180.0 |
180.3 |
C3 |
C6 |
C7 |
H7 |
180.0 |
180.0 |
N3 |
C8 |
N1 |
C9 |
180.5 |
180.0 |
N1 |
C8 |
N3 |
N2 |
181.2 |
180.1 |
N3 |
C8 |
N1 |
HN1 |
0.5 |
359.7 |
HN3 |
N3 |
C8 |
HN3A |
240.0 |
180.0 |
S |
C9 |
N4 |
N1 |
179.7 |
180.0 |
N4 |
C9 |
N1 |
HN1 |
177.3 |
180.2 |
C9 |
N4 |
N2 |
C8 |
358.5 |
360.0 |
C1 |
C7 |
C6 |
H7 |
180.0 |
180.1 |
C3 |
C6 |
C7 |
H6 |
180.0 |
179.7 |
C8 |
N1 |
HN1 |
C9 |
180.0 |
180.3 |
HN1 |
N1 |
C8 |
N2 |
181.6 |
179.7 |
HN1 |
N1 |
C8 |
N3 |
0.5 |
359.7 |
HN1 |
N1 |
C9 |
N4 |
177.3 |
180.2 |
C8 |
N3 |
HN3 |
HN3A |
120.0 |
180.0 |
C8 |
N3 |
HN3A |
HN3 |
239.9 |
180.0 |
H4 |
C4 |
S |
C9 |
50.7 |
300.0 |
S |
C4 |
H4 |
C3 |
233.3 |
240.0 |
S |
C4 |
H4 |
H4A |
116.6 |
120.0 |
H4 |
C4 |
C3 |
C6 |
207.5 |
150.3 |
C3 |
C4 |
H4 |
H4A |
243.3 |
240.0 |
H4A |
C4 |
S |
C9 |
170.7 |
60.0 |
S |
C4 |
H4A |
C3 |
126.7 |
120.0 |
S |
C4 |
H4A |
H4 |
243.3 |
240.0 |
H4A |
C4 |
C3 |
C6 |
87.5 |
30.3 |
C3 |
C4 |
H4A |
H4 |
116.7 |
120.0 |
H5 |
C5 |
C1 |
C7 |
189.7 |
180.3 |
C1 |
C5 |
H5 |
C2 |
180.0 |
180.1 |
C3 |
C6 |
H6 |
C7 |
180.0 |
180.3 |
H6 |
C6 |
C7 |
H7 |
360.0 |
0.3 |
C1 |
C7 |
H7 |
C6 |
180.0 |
179.9 |
H7 |
C7 |
C6 |
H6 |
360.0 |
0.3 |