PDB Chemical Component SZ1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SZ1
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N |
C1 |
1.456 |
1.470 |
C1 |
C2 |
1.529 |
1.542 |
C1 |
C7 |
1.532 |
1.505 |
C2 |
C3 |
1.527 |
1.456 |
C3 |
C4 |
1.523 |
1.542 |
C4 |
C5 |
1.525 |
1.505 |
C5 |
C6 |
1.521 |
1.541 |
C6 |
C7 |
1.528 |
1.540 |
N |
HN |
1.000 |
1.009 |
N |
HNA |
1.000 |
1.008 |
C1 |
H1 |
1.100 |
1.090 |
C2 |
H2 |
1.100 |
1.089 |
C2 |
H2A |
1.100 |
1.090 |
C3 |
H3 |
1.100 |
1.090 |
C3 |
H3A |
1.100 |
1.090 |
C4 |
H4 |
1.099 |
1.090 |
C4 |
H4A |
1.100 |
1.090 |
C5 |
H5 |
1.100 |
1.090 |
C5 |
H5A |
1.100 |
1.090 |
C6 |
H6 |
1.100 |
1.090 |
C6 |
H6A |
1.100 |
1.090 |
C7 |
H7 |
1.100 |
1.090 |
C7 |
H7A |
1.100 |
1.090 |
Bond Angles for SZ1
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N |
C1 |
C2 |
109.5 |
109.6 |
N |
C1 |
C7 |
108.5 |
109.6 |
C1 |
N |
HN |
109.5 |
111.0 |
C1 |
N |
HNA |
109.5 |
111.0 |
N |
C1 |
H1 |
111.5 |
109.6 |
C2 |
C1 |
C7 |
113.4 |
108.5 |
C1 |
C2 |
C3 |
112.5 |
112.4 |
C2 |
C1 |
H1 |
106.5 |
109.7 |
C1 |
C2 |
H2 |
108.5 |
109.0 |
C1 |
C2 |
H2A |
108.5 |
108.9 |
C1 |
C7 |
C6 |
115.4 |
112.5 |
C7 |
C1 |
H1 |
107.5 |
109.8 |
C1 |
C7 |
H7 |
107.5 |
108.9 |
C1 |
C7 |
H7A |
107.5 |
108.9 |
C2 |
C3 |
C4 |
112.6 |
112.4 |
C3 |
C2 |
H2 |
108.5 |
108.9 |
C3 |
C2 |
H2A |
108.5 |
108.8 |
C2 |
C3 |
H3 |
108.4 |
108.9 |
C2 |
C3 |
H3A |
108.4 |
108.9 |
C3 |
C4 |
C5 |
111.3 |
108.5 |
C4 |
C3 |
H3 |
108.4 |
108.9 |
C4 |
C3 |
H3A |
108.4 |
108.9 |
C3 |
C4 |
H4 |
108.9 |
109.6 |
C3 |
C4 |
H4A |
108.9 |
109.6 |
C4 |
C5 |
C6 |
112.4 |
112.5 |
C5 |
C4 |
H4 |
108.8 |
109.7 |
C5 |
C4 |
H4A |
108.9 |
109.6 |
C4 |
C5 |
H5 |
108.5 |
108.8 |
C4 |
C5 |
H5A |
108.5 |
108.9 |
C5 |
C6 |
C7 |
112.9 |
112.8 |
C6 |
C5 |
H5 |
108.5 |
108.9 |
C6 |
C5 |
H5A |
108.5 |
108.9 |
C5 |
C6 |
H6 |
108.3 |
108.8 |
C5 |
C6 |
H6A |
108.3 |
108.8 |
C7 |
C6 |
H6 |
108.3 |
108.9 |
C7 |
C6 |
H6A |
108.3 |
108.8 |
C6 |
C7 |
H7 |
107.6 |
108.8 |
C6 |
C7 |
H7A |
107.6 |
108.9 |
HN |
N |
HNA |
109.5 |
111.0 |
H2 |
C2 |
H2A |
110.4 |
108.8 |
H3 |
C3 |
H3A |
110.5 |
108.8 |
H4 |
C4 |
H4A |
110.1 |
109.8 |
H5 |
C5 |
H5A |
110.5 |
108.8 |
H6 |
C6 |
H6A |
110.6 |
108.7 |
H7 |
C7 |
H7A |
111.3 |
108.8 |
Torsion Angles for SZ1
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
N |
C7 |
124.2 |
119.0 |
N |
C1 |
C2 |
C3 |
148.8 |
160.3 |
C2 |
C1 |
N |
H1 |
242.4 |
239.6 |
N |
C1 |
C2 |
H2 |
268.8 |
281.0 |
N |
C1 |
C2 |
H2A |
28.8 |
39.6 |
N |
C1 |
C7 |
C6 |
157.6 |
213.9 |
C7 |
C1 |
N |
H1 |
118.2 |
120.6 |
N |
C1 |
C7 |
H7 |
277.6 |
334.6 |
N |
C1 |
C7 |
H7A |
37.6 |
93.1 |
HN |
N |
C1 |
HNA |
240.0 |
236.0 |
N |
C1 |
C2 |
C7 |
238.7 |
240.3 |
C2 |
C1 |
N |
HN |
180.0 |
180.0 |
C2 |
C1 |
N |
HNA |
300.0 |
304.0 |
N |
C1 |
C2 |
H1 |
120.7 |
120.4 |
C2 |
C1 |
C7 |
C6 |
35.7 |
94.2 |
C7 |
C1 |
C2 |
H1 |
242.0 |
240.1 |
C2 |
C1 |
C7 |
H7 |
155.7 |
215.0 |
C2 |
C1 |
C7 |
H7A |
275.7 |
333.4 |
C1 |
C2 |
C3 |
C4 |
78.7 |
61.9 |
C3 |
C2 |
C1 |
H2 |
240.0 |
239.3 |
C3 |
C2 |
C1 |
H2A |
120.0 |
120.7 |
C1 |
C2 |
C3 |
H3 |
198.7 |
182.7 |
C1 |
C2 |
C3 |
H3A |
318.7 |
301.2 |
H2 |
C2 |
C1 |
H2A |
240.0 |
241.4 |
N |
C1 |
C7 |
C2 |
121.9 |
119.7 |
C7 |
C1 |
N |
HN |
55.8 |
60.9 |
C7 |
C1 |
N |
HNA |
175.8 |
184.9 |
N |
C1 |
C7 |
H1 |
239.2 |
239.5 |
C7 |
C1 |
C2 |
C3 |
270.0 |
280.0 |
C2 |
C1 |
C7 |
H1 |
117.4 |
119.9 |
C7 |
C1 |
C2 |
H2 |
30.1 |
40.7 |
C7 |
C1 |
C2 |
H2A |
150.0 |
159.3 |
C5 |
C6 |
C7 |
C1 |
42.1 |
318.3 |
C1 |
C7 |
C6 |
H6 |
282.1 |
197.4 |
C1 |
C7 |
C6 |
H6A |
162.1 |
79.1 |
C6 |
C7 |
C1 |
H7 |
240.0 |
239.2 |
C6 |
C7 |
C1 |
H7A |
120.0 |
120.8 |
H7 |
C7 |
C1 |
H7A |
240.0 |
241.5 |
C3 |
C2 |
C1 |
C7 |
270.0 |
280.0 |
C3 |
C2 |
C1 |
H1 |
28.0 |
39.9 |
C1 |
C2 |
C3 |
H2 |
120.0 |
120.8 |
C1 |
C2 |
C3 |
H2A |
240.0 |
239.3 |
C2 |
C3 |
C4 |
C5 |
301.2 |
280.0 |
C4 |
C3 |
C2 |
H3 |
240.0 |
239.2 |
C4 |
C3 |
C2 |
H3A |
120.0 |
120.8 |
C2 |
C3 |
C4 |
H4 |
61.2 |
39.8 |
C2 |
C3 |
C4 |
H4A |
181.2 |
160.3 |
H2 |
C2 |
C3 |
H2A |
120.0 |
118.5 |
H3 |
C3 |
C2 |
H3A |
240.0 |
241.5 |
C4 |
C3 |
C2 |
H2 |
318.7 |
301.2 |
C4 |
C3 |
C2 |
H2A |
198.7 |
182.7 |
C2 |
C3 |
C4 |
H3 |
120.0 |
120.8 |
C2 |
C3 |
C4 |
H3A |
240.0 |
239.2 |
C3 |
C4 |
C5 |
C6 |
77.3 |
94.2 |
C5 |
C4 |
C3 |
H4 |
240.0 |
240.2 |
C5 |
C4 |
C3 |
H4A |
120.0 |
119.7 |
C3 |
C4 |
C5 |
H5 |
197.3 |
214.9 |
C3 |
C4 |
C5 |
H5A |
317.3 |
333.4 |
H3 |
C3 |
C4 |
H3A |
120.0 |
118.5 |
H4 |
C4 |
C3 |
H4A |
240.0 |
239.5 |
C5 |
C4 |
C3 |
H3 |
181.2 |
159.2 |
C5 |
C4 |
C3 |
H3A |
61.2 |
40.8 |
C3 |
C4 |
C5 |
H4 |
120.0 |
119.7 |
C3 |
C4 |
C5 |
H4A |
240.0 |
240.3 |
C4 |
C5 |
C6 |
C7 |
266.8 |
318.3 |
C6 |
C5 |
C4 |
H5 |
240.0 |
239.2 |
C6 |
C5 |
C4 |
H5A |
120.0 |
120.8 |
C4 |
C5 |
C6 |
H6 |
26.8 |
79.2 |
C4 |
C5 |
C6 |
H6A |
146.8 |
197.4 |
H4 |
C4 |
C5 |
H4A |
120.0 |
120.6 |
H5 |
C5 |
C4 |
H5A |
240.0 |
241.5 |
C1 |
C7 |
C6 |
C5 |
42.1 |
318.3 |
C6 |
C5 |
C4 |
H4 |
317.3 |
334.4 |
C6 |
C5 |
C4 |
H4A |
197.3 |
213.9 |
C4 |
C5 |
C6 |
H5 |
120.0 |
120.7 |
C4 |
C5 |
C6 |
H5A |
240.0 |
239.2 |
C7 |
C6 |
C5 |
H6 |
240.0 |
239.1 |
C7 |
C6 |
C5 |
H6A |
120.0 |
120.9 |
C5 |
C6 |
C7 |
H7 |
282.1 |
197.5 |
C5 |
C6 |
C7 |
H7A |
162.1 |
79.1 |
H5 |
C5 |
C6 |
H5A |
120.0 |
118.5 |
H6 |
C6 |
C5 |
H6A |
240.0 |
241.7 |
C6 |
C7 |
C1 |
H1 |
278.3 |
334.3 |
C1 |
C7 |
C6 |
H7 |
120.0 |
120.8 |
C1 |
C7 |
C6 |
H7A |
240.0 |
239.2 |
C7 |
C6 |
C5 |
H5 |
146.8 |
197.5 |
C7 |
C6 |
C5 |
H5A |
26.8 |
79.1 |
C5 |
C6 |
C7 |
H6 |
120.0 |
120.9 |
C5 |
C6 |
C7 |
H6A |
240.0 |
239.2 |
H6 |
C6 |
C7 |
H6A |
120.0 |
118.3 |
H7 |
C7 |
C6 |
H7A |
120.0 |
118.4 |
HN |
N |
C1 |
C2 |
180.0 |
180.0 |
HN |
N |
C1 |
C7 |
55.8 |
60.9 |
C1 |
N |
HN |
HNA |
120.0 |
124.0 |
HN |
N |
C1 |
H1 |
297.6 |
300.4 |
HNA |
N |
C1 |
C2 |
300.0 |
304.0 |
HNA |
N |
C1 |
C7 |
175.8 |
184.9 |
C1 |
N |
HNA |
HN |
240.0 |
236.0 |
HNA |
N |
C1 |
H1 |
57.6 |
64.4 |
N |
C1 |
H1 |
C2 |
240.6 |
239.6 |
N |
C1 |
H1 |
C7 |
118.8 |
120.5 |
H1 |
C1 |
N |
HN |
297.6 |
300.4 |
H1 |
C1 |
N |
HNA |
57.6 |
64.4 |
C2 |
C1 |
H1 |
C7 |
238.2 |
240.8 |
H1 |
C1 |
C2 |
C3 |
28.0 |
39.9 |
H1 |
C1 |
C2 |
H2 |
148.0 |
160.7 |
H1 |
C1 |
C2 |
H2A |
268.0 |
279.2 |
H1 |
C1 |
C7 |
C6 |
278.3 |
334.3 |
H1 |
C1 |
C7 |
H7 |
38.3 |
95.1 |
H1 |
C1 |
C7 |
H7A |
158.3 |
213.6 |
H2 |
C2 |
C1 |
C7 |
30.1 |
40.7 |
C1 |
C2 |
H2 |
C3 |
237.5 |
237.1 |
H2 |
C2 |
C1 |
H1 |
148.0 |
160.7 |
C1 |
C2 |
H2 |
H2A |
118.8 |
118.6 |
H2 |
C2 |
C3 |
C4 |
318.7 |
301.2 |
C3 |
C2 |
H2 |
H2A |
241.3 |
241.5 |
H2 |
C2 |
C3 |
H3 |
78.7 |
62.0 |
H2 |
C2 |
C3 |
H3A |
198.7 |
180.4 |
H2A |
C2 |
C1 |
C7 |
150.0 |
159.3 |
C1 |
C2 |
H2A |
C3 |
122.5 |
122.8 |
H2A |
C2 |
C1 |
H1 |
268.0 |
279.2 |
C1 |
C2 |
H2A |
H2 |
241.2 |
241.3 |
H2A |
C2 |
C3 |
C4 |
198.7 |
182.7 |
C3 |
C2 |
H2A |
H2 |
118.7 |
118.5 |
H2A |
C2 |
C3 |
H3 |
318.7 |
303.5 |
H2A |
C2 |
C3 |
H3A |
78.7 |
61.9 |
C2 |
C3 |
H3 |
C4 |
237.4 |
237.1 |
H3 |
C3 |
C2 |
H2 |
78.7 |
62.0 |
H3 |
C3 |
C2 |
H2A |
318.7 |
303.5 |
C2 |
C3 |
H3 |
H3A |
118.7 |
118.5 |
H3 |
C3 |
C4 |
C5 |
181.2 |
159.2 |
C4 |
C3 |
H3 |
H3A |
241.3 |
241.4 |
H3 |
C3 |
C4 |
H4 |
301.2 |
279.0 |
H3 |
C3 |
C4 |
H4A |
61.2 |
39.5 |
C2 |
C3 |
H3A |
C4 |
122.6 |
122.9 |
H3A |
C3 |
C2 |
H2 |
198.7 |
180.4 |
H3A |
C3 |
C2 |
H2A |
78.7 |
61.9 |
C2 |
C3 |
H3A |
H3 |
241.3 |
241.5 |
H3A |
C3 |
C4 |
C5 |
61.2 |
40.8 |
C4 |
C3 |
H3A |
H3 |
118.7 |
118.6 |
H3A |
C3 |
C4 |
H4 |
181.2 |
160.5 |
H3A |
C3 |
C4 |
H4A |
301.2 |
281.0 |
C3 |
C4 |
H4 |
C5 |
238.5 |
240.9 |
H4 |
C4 |
C3 |
H3 |
301.2 |
279.0 |
H4 |
C4 |
C3 |
H3A |
181.2 |
160.5 |
C3 |
C4 |
H4 |
H4A |
119.2 |
120.5 |
H4 |
C4 |
C5 |
C6 |
317.3 |
334.4 |
C5 |
C4 |
H4 |
H4A |
240.7 |
239.5 |
H4 |
C4 |
C5 |
H5 |
77.3 |
95.2 |
H4 |
C4 |
C5 |
H5A |
197.3 |
213.7 |
C3 |
C4 |
H4A |
C5 |
121.5 |
119.0 |
H4A |
C4 |
C3 |
H3 |
61.2 |
39.5 |
H4A |
C4 |
C3 |
H3A |
301.2 |
281.0 |
C3 |
C4 |
H4A |
H4 |
240.8 |
239.5 |
H4A |
C4 |
C5 |
C6 |
197.3 |
213.9 |
C5 |
C4 |
H4A |
H4 |
119.2 |
120.5 |
H4A |
C4 |
C5 |
H5 |
317.3 |
334.6 |
H4A |
C4 |
C5 |
H5A |
77.3 |
93.1 |
C4 |
C5 |
H5 |
C6 |
237.6 |
237.1 |
H5 |
C5 |
C4 |
H4 |
77.3 |
95.2 |
H5 |
C5 |
C4 |
H4A |
317.3 |
334.6 |
C4 |
C5 |
H5 |
H5A |
118.8 |
118.5 |
H5 |
C5 |
C6 |
C7 |
146.8 |
197.5 |
C6 |
C5 |
H5 |
H5A |
241.2 |
241.5 |
H5 |
C5 |
C6 |
H6 |
266.8 |
318.4 |
H5 |
C5 |
C6 |
H6A |
26.8 |
76.7 |
C4 |
C5 |
H5A |
C6 |
122.4 |
123.0 |
H5A |
C5 |
C4 |
H4 |
197.3 |
213.7 |
H5A |
C5 |
C4 |
H4A |
77.3 |
93.1 |
C4 |
C5 |
H5A |
H5 |
241.2 |
241.5 |
H5A |
C5 |
C6 |
C7 |
26.8 |
79.1 |
C6 |
C5 |
H5A |
H5 |
118.8 |
118.6 |
H5A |
C5 |
C6 |
H6 |
146.8 |
200.0 |
H5A |
C5 |
C6 |
H6A |
266.8 |
318.2 |
C5 |
C6 |
H6 |
C7 |
237.2 |
236.7 |
H6 |
C6 |
C5 |
H5 |
266.8 |
318.4 |
H6 |
C6 |
C5 |
H5A |
146.8 |
200.0 |
C5 |
C6 |
H6 |
H6A |
118.6 |
118.3 |
C7 |
C6 |
H6 |
H6A |
241.4 |
241.6 |
H6 |
C6 |
C7 |
H7 |
162.1 |
76.6 |
H6 |
C6 |
C7 |
H7A |
42.1 |
318.2 |
C5 |
C6 |
H6A |
C7 |
122.9 |
123.3 |
H6A |
C6 |
C5 |
H5 |
26.8 |
76.7 |
H6A |
C6 |
C5 |
H5A |
266.8 |
318.2 |
C5 |
C6 |
H6A |
H6 |
241.4 |
241.7 |
C7 |
C6 |
H6A |
H6 |
118.6 |
118.4 |
H6A |
C6 |
C7 |
H7 |
42.1 |
318.3 |
H6A |
C6 |
C7 |
H7A |
282.1 |
199.9 |
C1 |
C7 |
H7 |
C6 |
235.1 |
237.0 |
H7 |
C7 |
C1 |
H1 |
38.3 |
95.1 |
C1 |
C7 |
H7 |
H7A |
117.5 |
118.5 |
H7 |
C7 |
C6 |
H6 |
162.1 |
76.6 |
H7 |
C7 |
C6 |
H6A |
42.1 |
318.3 |
C6 |
C7 |
H7 |
H7A |
242.4 |
241.5 |
C1 |
C7 |
H7A |
C6 |
124.9 |
123.0 |
H7A |
C7 |
C1 |
H1 |
158.3 |
213.6 |
C1 |
C7 |
H7A |
H7 |
242.4 |
241.5 |
H7A |
C7 |
C6 |
H6 |
42.1 |
318.2 |
H7A |
C7 |
C6 |
H6A |
282.1 |
199.9 |
C6 |
C7 |
H7A |
H7 |
117.6 |
118.5 |