PDB Chemical Component SYM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SYM
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CB |
CG1 |
1.539 |
1.529 |
| CB |
CA |
1.541 |
1.529 |
| CB |
HB1 |
1.115 |
1.090 |
| CB |
HB2 |
1.115 |
1.091 |
| CG1 |
CG2 |
1.531 |
1.530 |
| CG1 |
CD |
1.544 |
1.507 |
| CG1 |
HG1 |
1.115 |
1.090 |
| CG2 |
HG21 |
1.115 |
1.090 |
| CG2 |
HG22 |
1.115 |
1.090 |
| CG2 |
HG23 |
1.115 |
1.089 |
| CD |
OE1 |
1.261 |
1.343 |
| CD |
OE2 |
1.260 |
1.208 |
| OE1 |
HE1 |
0.950 |
0.967 |
| C |
OT1 |
1.263 |
1.343 |
| C |
OT2 |
1.254 |
1.208 |
| C |
CA |
1.540 |
1.507 |
| N |
CA |
1.495 |
1.469 |
| N |
HN1 |
1.019 |
1.009 |
| N |
HN2 |
1.020 |
1.009 |
| CA |
HA |
1.115 |
1.090 |
Bond Angles for SYM
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CG1 |
CB |
CA |
114.9 |
109.5 |
| CG1 |
CB |
HB1 |
110.2 |
109.5 |
| CG1 |
CB |
HB2 |
110.2 |
109.4 |
| CB |
CG1 |
CG2 |
111.6 |
109.5 |
| CB |
CG1 |
CD |
111.1 |
109.5 |
| CB |
CG1 |
HG1 |
107.8 |
109.5 |
| CA |
CB |
HB1 |
110.3 |
109.5 |
| CA |
CB |
HB2 |
110.2 |
109.5 |
| CB |
CA |
C |
110.6 |
109.5 |
| CB |
CA |
N |
109.1 |
109.5 |
| CB |
CA |
HA |
109.5 |
109.5 |
| HB1 |
CB |
HB2 |
100.0 |
109.5 |
| CG2 |
CG1 |
CD |
112.0 |
109.5 |
| CG2 |
CG1 |
HG1 |
106.8 |
109.4 |
| CG1 |
CG2 |
HG21 |
111.4 |
109.5 |
| CG1 |
CG2 |
HG22 |
111.6 |
109.5 |
| CG1 |
CG2 |
HG23 |
111.4 |
109.5 |
| CD |
CG1 |
HG1 |
107.3 |
109.5 |
| CG1 |
CD |
OE1 |
119.0 |
120.0 |
| CG1 |
CD |
OE2 |
118.8 |
120.0 |
| HG21 |
CG2 |
HG22 |
111.5 |
109.5 |
| HG21 |
CG2 |
HG23 |
98.9 |
109.5 |
| HG22 |
CG2 |
HG23 |
111.5 |
109.5 |
| OE1 |
CD |
OE2 |
122.3 |
120.0 |
| CD |
OE1 |
HE1 |
119.0 |
120.0 |
| OT1 |
C |
OT2 |
123.3 |
120.0 |
| OT1 |
C |
CA |
118.8 |
120.0 |
| OT2 |
C |
CA |
117.9 |
120.0 |
| C |
CA |
N |
111.1 |
109.5 |
| C |
CA |
HA |
107.4 |
109.4 |
| CA |
N |
HN1 |
112.4 |
106.7 |
| CA |
N |
HN2 |
109.0 |
106.7 |
| N |
CA |
HA |
109.1 |
109.5 |
| HN1 |
N |
HN2 |
112.4 |
106.7 |
Torsion Angles for SYM
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
CB |
CG1 |
HB1 |
125.3 |
240.0 |
| CA |
CB |
CG1 |
HB2 |
234.7 |
120.0 |
| CG1 |
CB |
CA |
C |
162.0 |
174.6 |
| CG1 |
CB |
CA |
N |
284.4 |
294.6 |
| CG1 |
CB |
CA |
HA |
43.8 |
54.6 |
| HB1 |
CB |
CG1 |
HB2 |
109.5 |
240.0 |
| CG2 |
CG1 |
CB |
CD |
234.2 |
240.0 |
| CG2 |
CG1 |
CB |
HG1 |
116.9 |
120.0 |
| CB |
CG1 |
CG2 |
HG21 |
54.7 |
181.1 |
| CB |
CG1 |
CG2 |
HG22 |
180.0 |
301.2 |
| CB |
CG1 |
CG2 |
HG23 |
305.3 |
61.1 |
| CD |
CG1 |
CB |
HG1 |
242.7 |
240.0 |
| CB |
CG1 |
CD |
OE1 |
341.1 |
180.0 |
| CB |
CG1 |
CD |
OE2 |
161.5 |
0.0 |
| CG1 |
CB |
CA |
HB1 |
234.7 |
120.0 |
| CG1 |
CB |
CA |
HB2 |
125.3 |
240.0 |
| CA |
CB |
CG1 |
CG2 |
165.6 |
173.3 |
| CA |
CB |
CG1 |
CD |
291.4 |
293.3 |
| CA |
CB |
CG1 |
HG1 |
48.7 |
53.3 |
| HB1 |
CB |
CA |
HB2 |
250.5 |
120.0 |
| OT1 |
C |
CA |
CB |
313.5 |
280.0 |
| OT2 |
C |
CA |
CB |
133.6 |
100.0 |
| C |
CA |
CB |
N |
237.6 |
240.0 |
| C |
CA |
CB |
HA |
118.2 |
120.0 |
| CB |
CA |
N |
HN1 |
54.7 |
186.2 |
| CB |
CA |
N |
HN2 |
180.0 |
299.9 |
| N |
CA |
CB |
HA |
240.7 |
240.0 |
| CG1 |
CB |
HB1 |
CA |
127.8 |
240.0 |
| CG1 |
CB |
HB1 |
HB2 |
243.9 |
120.0 |
| HB1 |
CB |
CG1 |
CG2 |
40.3 |
293.3 |
| HB1 |
CB |
CG1 |
CD |
166.1 |
53.3 |
| HB1 |
CB |
CG1 |
HG1 |
283.4 |
173.3 |
| CA |
CB |
HB1 |
HB2 |
116.1 |
240.0 |
| HB1 |
CB |
CA |
C |
287.3 |
54.6 |
| HB1 |
CB |
CA |
N |
49.7 |
174.6 |
| HB1 |
CB |
CA |
HA |
169.0 |
294.6 |
| CG1 |
CB |
HB2 |
CA |
232.2 |
120.0 |
| CG1 |
CB |
HB2 |
HB1 |
116.1 |
240.0 |
| HB2 |
CB |
CG1 |
CG2 |
290.9 |
53.3 |
| HB2 |
CB |
CG1 |
CD |
56.6 |
173.3 |
| HB2 |
CB |
CG1 |
HG1 |
174.0 |
293.3 |
| CA |
CB |
HB2 |
HB1 |
243.9 |
120.0 |
| HB2 |
CB |
CA |
C |
36.7 |
294.6 |
| HB2 |
CB |
CA |
N |
159.2 |
54.6 |
| HB2 |
CB |
CA |
HA |
278.5 |
174.6 |
| CG2 |
CG1 |
CB |
CA |
165.6 |
173.3 |
| CG2 |
CG1 |
CB |
HB1 |
40.3 |
293.3 |
| CG2 |
CG1 |
CB |
HB2 |
290.9 |
53.3 |
| CB |
CG1 |
CG2 |
CD |
125.3 |
120.0 |
| CB |
CG1 |
CG2 |
HG1 |
242.5 |
240.0 |
| CD |
CG1 |
CG2 |
HG1 |
117.2 |
120.0 |
| CG2 |
CG1 |
CD |
OE1 |
106.6 |
300.0 |
| CG2 |
CG1 |
CD |
OE2 |
287.1 |
120.1 |
| HG21 |
CG2 |
CG1 |
HG22 |
234.7 |
240.0 |
| HG21 |
CG2 |
CG1 |
HG23 |
109.4 |
120.0 |
| HG22 |
CG2 |
CG1 |
HG23 |
234.7 |
240.0 |
| CD |
CG1 |
CB |
CA |
291.4 |
293.3 |
| CD |
CG1 |
CB |
HB1 |
166.1 |
53.3 |
| CD |
CG1 |
CB |
HB2 |
56.6 |
173.3 |
| CB |
CG1 |
CD |
CG2 |
234.5 |
240.0 |
| CB |
CG1 |
CD |
HG1 |
117.6 |
120.0 |
| CG2 |
CG1 |
CD |
HG1 |
243.1 |
240.1 |
| CD |
CG1 |
CG2 |
HG21 |
289.4 |
61.1 |
| CD |
CG1 |
CG2 |
HG22 |
54.7 |
181.1 |
| CD |
CG1 |
CG2 |
HG23 |
180.0 |
301.1 |
| OE1 |
CD |
CG1 |
OE2 |
179.5 |
180.0 |
| CG1 |
CD |
OE1 |
HE1 |
180.0 |
180.0 |
| HG1 |
CG1 |
CB |
CA |
48.7 |
53.3 |
| HG1 |
CG1 |
CB |
HB1 |
283.4 |
173.3 |
| HG1 |
CG1 |
CB |
HB2 |
174.0 |
293.3 |
| CB |
CG1 |
HG1 |
CG2 |
120.0 |
120.0 |
| CB |
CG1 |
HG1 |
CD |
240.3 |
240.0 |
| CG2 |
CG1 |
HG1 |
CD |
120.3 |
120.0 |
| HG1 |
CG1 |
CG2 |
HG21 |
172.2 |
301.2 |
| HG1 |
CG1 |
CG2 |
HG22 |
297.5 |
61.2 |
| HG1 |
CG1 |
CG2 |
HG23 |
62.8 |
181.2 |
| HG1 |
CG1 |
CD |
OE1 |
223.5 |
60.0 |
| HG1 |
CG1 |
CD |
OE2 |
44.0 |
240.0 |
| HG21 |
CG2 |
CG1 |
CD |
289.4 |
61.1 |
| HG21 |
CG2 |
CG1 |
HG1 |
172.2 |
301.2 |
| CG1 |
CG2 |
HG21 |
HG22 |
125.3 |
120.0 |
| CG1 |
CG2 |
HG21 |
HG23 |
242.7 |
240.0 |
| HG22 |
CG2 |
HG21 |
HG23 |
117.4 |
120.0 |
| HG22 |
CG2 |
CG1 |
CD |
54.7 |
181.1 |
| HG22 |
CG2 |
CG1 |
HG1 |
297.5 |
61.2 |
| CG1 |
CG2 |
HG22 |
HG21 |
234.8 |
240.0 |
| CG1 |
CG2 |
HG22 |
HG23 |
125.3 |
120.0 |
| HG21 |
CG2 |
HG22 |
HG23 |
250.5 |
240.0 |
| HG23 |
CG2 |
CG1 |
CD |
180.0 |
301.1 |
| HG23 |
CG2 |
CG1 |
HG1 |
62.8 |
181.2 |
| CG1 |
CG2 |
HG23 |
HG21 |
117.3 |
120.0 |
| CG1 |
CG2 |
HG23 |
HG22 |
234.6 |
240.0 |
| HG21 |
CG2 |
HG23 |
HG22 |
117.4 |
120.0 |
| OE1 |
CD |
CG1 |
HG1 |
223.5 |
60.0 |
| CG1 |
CD |
OE1 |
OE2 |
180.5 |
180.0 |
| OE2 |
CD |
CG1 |
HG1 |
44.0 |
240.0 |
| CG1 |
CD |
OE2 |
OE1 |
179.5 |
180.0 |
| OE2 |
CD |
OE1 |
HE1 |
359.6 |
360.0 |
| HE1 |
OE1 |
CD |
OE2 |
359.6 |
360.0 |
| CB |
CA |
C |
OT1 |
313.5 |
280.0 |
| OT2 |
C |
OT1 |
CA |
179.9 |
180.0 |
| OT1 |
C |
CA |
N |
192.2 |
160.0 |
| OT1 |
C |
CA |
HA |
73.0 |
40.0 |
| CB |
CA |
C |
OT2 |
133.6 |
100.0 |
| OT1 |
C |
OT2 |
CA |
180.1 |
180.0 |
| OT2 |
C |
CA |
N |
12.3 |
340.0 |
| OT2 |
C |
CA |
HA |
253.1 |
220.0 |
| C |
CA |
CB |
HB1 |
287.3 |
54.6 |
| C |
CA |
CB |
HB2 |
36.7 |
294.6 |
| CB |
CA |
C |
N |
121.3 |
120.0 |
| CB |
CA |
C |
HA |
240.5 |
240.0 |
| OT1 |
C |
CA |
OT2 |
179.9 |
180.0 |
| C |
CA |
N |
HN1 |
176.9 |
306.2 |
| C |
CA |
N |
HN2 |
302.2 |
60.0 |
| N |
CA |
C |
HA |
119.2 |
120.0 |
| N |
CA |
CB |
HB1 |
49.7 |
174.6 |
| N |
CA |
CB |
HB2 |
159.2 |
54.6 |
| CB |
CA |
N |
C |
237.8 |
240.0 |
| CB |
CA |
N |
HA |
119.6 |
120.0 |
| C |
CA |
N |
HA |
241.8 |
240.1 |
| HN1 |
N |
CA |
HN2 |
234.7 |
246.3 |
| CA |
N |
HN1 |
HN2 |
123.4 |
113.7 |
| HN1 |
N |
CA |
HA |
295.1 |
66.2 |
| CA |
N |
HN2 |
HN1 |
234.7 |
246.3 |
| HN2 |
N |
CA |
HA |
60.4 |
179.9 |
| HA |
CA |
CB |
HB1 |
169.0 |
294.6 |
| HA |
CA |
CB |
HB2 |
278.5 |
174.6 |
| CB |
CA |
HA |
C |
120.2 |
120.0 |
| CB |
CA |
HA |
N |
240.7 |
240.0 |
| C |
CA |
HA |
N |
120.5 |
120.0 |
| HA |
CA |
N |
HN1 |
295.1 |
66.2 |
| HA |
CA |
N |
HN2 |
60.4 |
179.9 |