PDB Chemical Component SYC
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SYC
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
N2 |
1.335 |
1.318 |
| C1 |
C6 |
1.380 |
1.382 |
| N2 |
C3 |
1.351 |
1.318 |
| C3 |
C4 |
1.406 |
1.382 |
| C3 |
C11 |
1.494 |
1.508 |
| C4 |
C5 |
1.394 |
1.386 |
| C5 |
C6 |
1.396 |
1.386 |
| C11 |
P12 |
1.837 |
1.823 |
| P12 |
O15 |
1.537 |
1.480 |
| P12 |
O16 |
1.615 |
1.610 |
| P12 |
O17 |
1.569 |
1.610 |
| C1 |
H1 |
1.080 |
1.080 |
| C4 |
H4 |
1.080 |
1.080 |
| C5 |
H5 |
1.080 |
1.080 |
| C6 |
H6 |
1.080 |
1.080 |
| C11 |
H11 |
1.100 |
1.089 |
| C11 |
H11A |
1.100 |
1.090 |
| O16 |
HO16 |
0.950 |
0.967 |
| O17 |
HO17 |
0.950 |
0.967 |
Bond Angles for SYC
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N2 |
C1 |
C6 |
119.6 |
120.8 |
| C1 |
N2 |
C3 |
121.3 |
121.7 |
| N2 |
C1 |
H1 |
120.2 |
119.6 |
| C1 |
C6 |
C5 |
120.7 |
119.1 |
| C6 |
C1 |
H1 |
120.2 |
119.6 |
| C1 |
C6 |
H6 |
119.7 |
120.4 |
| N2 |
C3 |
C4 |
121.8 |
120.8 |
| N2 |
C3 |
C11 |
118.3 |
119.6 |
| C4 |
C3 |
C11 |
119.9 |
119.6 |
| C3 |
C4 |
C5 |
117.0 |
119.1 |
| C3 |
C4 |
H4 |
121.5 |
120.4 |
| C3 |
C11 |
P12 |
112.5 |
109.4 |
| C3 |
C11 |
H11 |
108.5 |
109.5 |
| C3 |
C11 |
H11A |
108.5 |
109.5 |
| C4 |
C5 |
C6 |
119.5 |
118.4 |
| C5 |
C4 |
H4 |
121.5 |
120.5 |
| C4 |
C5 |
H5 |
120.2 |
120.8 |
| C6 |
C5 |
H5 |
120.3 |
120.8 |
| C5 |
C6 |
H6 |
119.6 |
120.4 |
| C11 |
P12 |
O15 |
109.9 |
109.5 |
| C11 |
P12 |
O16 |
107.8 |
109.5 |
| C11 |
P12 |
O17 |
115.7 |
109.4 |
| P12 |
C11 |
H11 |
108.5 |
109.5 |
| P12 |
C11 |
H11A |
108.5 |
109.5 |
| O15 |
P12 |
O16 |
109.8 |
109.5 |
| O15 |
P12 |
O17 |
114.6 |
109.4 |
| O16 |
P12 |
O17 |
98.2 |
109.5 |
| P12 |
O16 |
HO16 |
109.5 |
114.0 |
| P12 |
O17 |
HO17 |
109.5 |
114.0 |
| H11 |
C11 |
H11A |
110.4 |
109.4 |
Torsion Angles for SYC
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N2 |
C1 |
C6 |
C5 |
359.6 |
360.0 |
| C6 |
C1 |
N2 |
H1 |
180.0 |
180.3 |
| N2 |
C1 |
C6 |
H6 |
179.6 |
180.0 |
| C1 |
N2 |
C3 |
C4 |
2.5 |
0.0 |
| C1 |
N2 |
C3 |
C11 |
181.4 |
180.0 |
| C6 |
C1 |
N2 |
C3 |
358.6 |
360.0 |
| N2 |
C1 |
C6 |
H1 |
180.0 |
179.7 |
| C4 |
C5 |
C6 |
C1 |
0.9 |
0.1 |
| C1 |
C6 |
C5 |
H5 |
180.9 |
180.0 |
| C5 |
C6 |
C1 |
H6 |
180.0 |
180.0 |
| C3 |
N2 |
C1 |
C6 |
358.6 |
360.0 |
| C3 |
N2 |
C1 |
H1 |
178.6 |
179.7 |
| C4 |
C3 |
N2 |
C11 |
181.1 |
180.1 |
| N2 |
C3 |
C4 |
C5 |
358.1 |
360.0 |
| N2 |
C3 |
C4 |
H4 |
178.1 |
179.9 |
| N2 |
C3 |
C11 |
P12 |
102.6 |
90.0 |
| N2 |
C3 |
C11 |
H11 |
222.7 |
210.0 |
| N2 |
C3 |
C11 |
H11A |
342.6 |
330.0 |
| N2 |
C3 |
C4 |
C11 |
178.9 |
179.9 |
| C4 |
C3 |
C11 |
P12 |
281.6 |
270.0 |
| C4 |
C3 |
C11 |
H11 |
41.6 |
30.0 |
| C4 |
C3 |
C11 |
H11A |
161.6 |
150.0 |
| C3 |
C4 |
C5 |
C6 |
0.2 |
360.0 |
| C5 |
C4 |
C3 |
H4 |
180.0 |
180.0 |
| C3 |
C4 |
C5 |
H5 |
180.2 |
180.0 |
| N2 |
C3 |
C11 |
C4 |
181.1 |
180.1 |
| C11 |
C3 |
C4 |
C5 |
179.2 |
180.0 |
| C11 |
C3 |
C4 |
H4 |
359.3 |
360.0 |
| C3 |
C11 |
P12 |
O15 |
175.9 |
305.0 |
| C3 |
C11 |
P12 |
O16 |
56.2 |
65.0 |
| C3 |
C11 |
P12 |
O17 |
307.5 |
185.0 |
| P12 |
C11 |
C3 |
H11 |
240.0 |
240.0 |
| P12 |
C11 |
C3 |
H11A |
120.0 |
120.0 |
| H11 |
C11 |
C3 |
H11A |
240.0 |
240.0 |
| C1 |
C6 |
C5 |
C4 |
0.9 |
0.1 |
| C5 |
C4 |
C3 |
C11 |
179.2 |
180.0 |
| C3 |
C4 |
C5 |
H4 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
H6 |
180.9 |
180.0 |
| C5 |
C6 |
C1 |
H1 |
179.6 |
180.2 |
| C1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
H4 |
180.2 |
180.0 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.0 |
| C3 |
C11 |
P12 |
H11 |
120.0 |
120.0 |
| C3 |
C11 |
P12 |
H11A |
240.0 |
240.0 |
| O15 |
P12 |
C11 |
O16 |
119.7 |
240.0 |
| O15 |
P12 |
C11 |
O17 |
228.3 |
119.9 |
| O16 |
P12 |
C11 |
O17 |
108.7 |
240.0 |
| C11 |
P12 |
O16 |
HO16 |
119.8 |
60.0 |
| C11 |
P12 |
O17 |
HO17 |
230.6 |
180.1 |
| H11 |
C11 |
P12 |
H11A |
120.0 |
120.0 |
| C11 |
P12 |
O15 |
O16 |
241.5 |
120.0 |
| C11 |
P12 |
O15 |
O17 |
132.2 |
240.1 |
| O15 |
P12 |
C11 |
H11 |
55.8 |
185.0 |
| O15 |
P12 |
C11 |
H11A |
295.9 |
65.0 |
| O16 |
P12 |
O15 |
O17 |
250.7 |
120.0 |
| O15 |
P12 |
O16 |
HO16 |
0.0 |
180.0 |
| O15 |
P12 |
O17 |
HO17 |
360.0 |
60.1 |
| C11 |
P12 |
O16 |
O15 |
119.7 |
240.0 |
| C11 |
P12 |
O16 |
O17 |
239.6 |
120.0 |
| O16 |
P12 |
C11 |
H11 |
296.2 |
305.0 |
| O16 |
P12 |
C11 |
H11A |
176.2 |
185.0 |
| O15 |
P12 |
O16 |
O17 |
119.9 |
240.0 |
| O16 |
P12 |
O17 |
HO17 |
116.2 |
300.1 |
| C11 |
P12 |
O17 |
O15 |
230.6 |
119.9 |
| C11 |
P12 |
O17 |
O16 |
114.3 |
240.0 |
| O17 |
P12 |
C11 |
H11 |
187.5 |
65.0 |
| O17 |
P12 |
C11 |
H11A |
67.5 |
305.1 |
| O15 |
P12 |
O17 |
O16 |
243.8 |
120.0 |
| O17 |
P12 |
O16 |
HO16 |
240.2 |
300.0 |
| N2 |
C1 |
H1 |
C6 |
180.0 |
180.3 |
| H1 |
C1 |
N2 |
C3 |
178.6 |
179.7 |
| H1 |
C1 |
C6 |
C5 |
179.6 |
180.2 |
| H1 |
C1 |
C6 |
H6 |
359.6 |
0.3 |
| H4 |
C4 |
C3 |
C11 |
359.3 |
360.0 |
| C3 |
C4 |
H4 |
C5 |
180.0 |
180.0 |
| H4 |
C4 |
C5 |
C6 |
180.2 |
180.0 |
| H4 |
C4 |
C5 |
H5 |
0.2 |
0.0 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
180.0 |
| H5 |
C5 |
C4 |
H4 |
0.2 |
0.0 |
| H5 |
C5 |
C6 |
H6 |
0.9 |
360.0 |
| C1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
| H6 |
C6 |
C1 |
H1 |
359.6 |
0.3 |
| H6 |
C6 |
C5 |
H5 |
0.9 |
360.0 |
| C3 |
C11 |
H11 |
P12 |
237.5 |
240.0 |
| C3 |
C11 |
H11 |
H11A |
118.8 |
120.0 |
| H11 |
C11 |
P12 |
O15 |
55.8 |
185.0 |
| H11 |
C11 |
P12 |
O16 |
296.2 |
305.0 |
| H11 |
C11 |
P12 |
O17 |
187.5 |
65.0 |
| P12 |
C11 |
H11 |
H11A |
241.3 |
240.0 |
| C3 |
C11 |
H11A |
P12 |
122.5 |
120.0 |
| C3 |
C11 |
H11A |
H11 |
241.2 |
240.0 |
| H11A |
C11 |
P12 |
O15 |
295.9 |
65.0 |
| H11A |
C11 |
P12 |
O16 |
176.2 |
185.0 |
| H11A |
C11 |
P12 |
O17 |
67.5 |
305.1 |
| P12 |
C11 |
H11A |
H11 |
118.7 |
120.0 |
| HO16 |
O16 |
P12 |
O17 |
240.2 |
300.0 |