PDB Chemical Component SXC

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for SXC

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
BR1 PD1 2.435 2.240
PD1 C1 2.024 1.930
PD1 S2 2.259 2.163
S1 C7 1.812 1.855
S1 PD1 2.295 2.163
S2 C12 1.758 1.814
S2 C10 1.852 1.856
O3 P1 1.587 1.610
P1 O1 1.532 1.610
O1 C16 1.455 1.429
O2 P1 1.498 1.480
C1 C6 1.413 1.338
C2 C1 1.393 1.337
C2 C3 1.403 1.417
C3 C4 1.367 1.383
C3 H3 1.080 1.080
C4 C5 1.379 1.384
C4 C13 1.526 1.506
C5 H5 1.080 1.079
C6 C10 1.501 1.515
C6 C5 1.405 1.420
C7 C2 1.530 1.520
C7 H17 1.100 1.090
C7 H27 1.100 1.090
C9 S1 1.805 1.814
C9 H19 1.099 1.091
C9 H29 1.100 1.090
C9 H39 1.100 1.090
C10 H110 1.100 1.091
C10 H210 1.100 1.090
C12 H112 1.100 1.090
C12 H212 1.100 1.090
C12 H312 1.100 1.090
C13 C14 1.564 1.530
C13 H113 1.100 1.090
C13 H213 1.100 1.090
C14 C15 1.536 1.530
C14 H114 1.101 1.090
C14 H214 1.099 1.091
C15 P1 1.792 1.823
C15 H115 1.100 1.091
C15 H215 1.100 1.090
C16 C17 1.561 1.531
C16 H116 1.100 1.090
C16 H216 1.100 1.090
C17 H117 1.100 1.090
C17 H217 1.100 1.091
C17 H317 1.100 1.089
O3 C161 1.430 1.359
C19 C161 1.540 1.387
C161 C20 1.540 1.387
C171 C18 1.540 1.383
C18 C19 1.541 1.382
C20 C21 1.541 1.381
C171 C21 1.540 1.382
C171 N1 1.470 1.480
N1 O4 1.361 1.218
N1 O5 1.170 1.218
C18 H24 1.080 1.080
C19 H25 1.080 1.081
C20 H26 1.080 1.080
C21 H271 1.080 1.080

Bond Angles for SXC

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
BR1 PD1 C1 179.5 118.6
BR1 PD1 S2 96.6 116.5
S2 PD1 C1 83.1 94.4
S1 PD1 C1 84.6 94.1
PD1 C1 C6 123.4 110.1
S1 PD1 S2 167.7 112.7
PD1 S2 C12 103.4 103.0
PD1 S2 C10 104.3 91.8
S1 C7 C2 110.7 111.4
S1 C7 H17 109.0 109.1
S1 C7 H27 108.8 109.1
C10 S2 C12 102.3 103.0
S2 C12 H112 109.5 109.5
S2 C12 H212 109.5 109.5
S2 C12 H312 109.4 109.5
S2 C10 C6 110.6 110.6
S2 C10 H110 109.1 109.2
S2 C10 H210 108.9 109.2
P1 O1 C16 122.5 123.0
O1 C16 C17 110.7 109.5
O1 C16 H116 109.0 109.5
O1 C16 H216 108.8 109.5
C2 C1 C6 115.7 135.7
C1 C6 C10 117.5 123.6
C1 C6 C5 123.4 109.0
C2 C3 C4 121.2 117.4
C2 C3 H3 119.4 121.3
C4 C3 H3 119.4 121.3
C3 C4 C5 120.4 125.6
C3 C4 C13 121.1 117.2
C5 C4 C13 118.4 117.2
C4 C5 H5 121.0 121.2
C4 C13 C14 112.1 109.5
C4 C13 H113 108.6 109.5
C4 C13 H213 108.0 109.5
C6 C5 H5 121.0 121.3
C6 C10 H110 109.1 108.7
C6 C10 H210 108.9 110.0
H17 C7 H27 110.4 109.0
H19 C9 H29 109.5 109.5
H19 C9 H39 109.4 109.4
H29 C9 H39 109.5 109.5
H110 C10 H210 110.3 109.1
H112 C12 H212 109.5 109.5
H112 C12 H312 109.4 109.4
H212 C12 H312 109.5 109.5
C14 C13 H113 108.6 109.5
C14 C13 H213 108.0 109.4
C13 C14 C15 108.9 109.5
C13 C14 H114 109.7 109.5
C13 C14 H214 109.8 109.4
H113 C13 H213 111.6 109.5
C15 C14 H114 109.7 109.5
C15 C14 H214 109.8 109.5
C14 C15 H115 106.3 109.5
C14 C15 H215 104.1 109.5
H114 C14 H214 109.0 109.5
H115 C15 H215 117.4 109.4
C17 C16 H116 109.1 109.4
C17 C16 H216 108.8 109.4
C16 C17 H117 109.5 109.5
C16 C17 H217 109.5 109.4
C16 C17 H317 109.5 109.5
H116 C16 H216 110.4 109.5
H117 C17 H217 109.5 109.5
H117 C17 H317 109.4 109.5
H217 C17 H317 109.5 109.5
O3 C161 C20 150.0 120.1
C19 C161 C20 120.0 119.9
C161 C20 C21 120.0 119.9
C161 C20 H26 120.0 120.0
C171 C18 C19 120.0 120.0
C18 C171 C21 120.1 120.1
C18 C171 N1 120.0 119.9
C171 C18 H24 120.0 120.0
C19 C18 H24 120.0 120.0
C18 C19 H25 120.0 120.0
C171 C21 C20 120.0 120.1
C21 C20 H26 120.0 120.1
C20 C21 H271 120.0 119.9
C21 C171 N1 120.0 120.0
C171 C21 H271 120.0 120.0
C171 N1 O4 120.0 120.0
C171 N1 O5 120.0 120.0
O4 N1 O5 120.0 120.0

Torsion Angles for SXC

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
S2 PD1 BR1 C1 313.7 248.3
S1 PD1 BR1 C1 133.2 111.3
BR1 PD1 C1 C6 302.5 258.2
S1 PD1 BR1 S2 179.5 223.0
BR1 PD1 S2 C12 293.0 203.2
BR1 PD1 S2 C10 186.3 99.4
BR1 PD1 C1 S2 313.7 236.5
S1 PD1 C1 S2 180.4 113.1
C1 PD1 S2 C12 113.3 78.1
C1 PD1 S2 C10 6.7 334.3
C2 C1 PD1 C6 183.6 199.4
PD1 C1 C6 C10 12.0 354.5
PD1 C1 C6 C5 188.0 176.3
BR1 PD1 S2 C1 179.7 125.1
S1 PD1 S2 C1 1.9 263.7
S2 PD1 C1 C6 348.8 21.7
C10 S2 PD1 C12 253.3 256.2
PD1 S2 C12 H112 39.6 60.0
PD1 S2 C12 H212 159.6 180.0
PD1 S2 C12 H312 279.7 300.0
PD1 S2 C10 C6 356.8 27.4
PD1 S2 C10 H110 116.8 147.0
PD1 S2 C10 H210 237.3 266.2
C7 S1 PD1 C1 16.7 26.2
C7 S1 PD1 S2 14.8 122.7
H17 C7 S1 H27 239.5 241.0
BR1 PD1 S1 C1 180.3 235.1
BR1 PD1 S1 S2 182.2 138.6
S2 PD1 S1 C1 358.1 96.5
S1 PD1 C1 C6 169.2 134.9
S1 PD1 S2 C12 115.2 341.8
S1 PD1 S2 C10 8.5 238.0
C12 S2 PD1 C1 113.3 78.1
PD1 S2 C12 C10 251.8 265.0
C12 S2 C10 C6 249.3 283.6
C12 S2 C10 H110 9.3 43.2
C12 S2 C10 H210 129.7 162.4
H112 C12 S2 H212 240.0 240.0
H112 C12 S2 H312 120.0 119.9
H212 C12 S2 H312 239.9 240.0
C10 S2 PD1 C1 6.7 334.3
PD1 S2 C10 C12 107.5 103.8
C10 S2 C12 H112 147.8 154.9
C10 S2 C12 H212 267.8 275.0
C10 S2 C12 H312 27.8 35.0
C1 C6 C10 S2 355.6 341.8
C6 C10 S2 H110 240.0 240.4
C6 C10 S2 H210 119.5 121.2
H110 C10 S2 H210 239.5 240.8
P1 O1 C16 C17 163.1 175.5
P1 O1 C16 H116 283.2 295.5
P1 O1 C16 H216 43.6 55.5
C17 C16 O1 H116 240.0 240.0
C17 C16 O1 H216 119.5 120.0
O1 C16 C17 H117 307.4 180.0
O1 C16 C17 H217 67.5 300.0
O1 C16 C17 H317 187.5 60.0
H116 C16 O1 H216 239.5 240.0
O2 P1 O1 C16 293.3 32.8
S2 C10 C6 C1 355.6 341.8
C1 C6 C5 H5 176.6 188.5
C1 C6 C10 H110 235.6 222.0
C1 C6 C10 H210 115.2 102.5
PD1 C1 C2 C6 176.6 153.5
S1 C7 C2 C1 23.9 11.5
C2 C1 C6 C10 188.6 148.0
C2 C1 C6 C5 4.5 329.8
S1 C7 C2 C3 199.3 201.6
C3 C2 C1 C6 359.3 30.6
C4 C3 C2 H3 180.0 180.0
C2 C3 C4 C5 5.6 355.3
C2 C3 C4 C13 187.9 175.2
C2 C3 C4 H3 180.0 180.0
C5 C4 C3 C13 177.7 180.1
C3 C4 C5 H5 178.3 185.1
C3 C4 C13 C14 99.1 90.0
C3 C4 C13 H113 219.1 210.0
C3 C4 C13 H213 340.3 330.0
C2 C3 H3 C4 180.0 180.0
H3 C3 C4 C5 185.6 175.3
H3 C3 C4 C13 7.9 355.2
C1 C6 C5 C4 356.6 8.5
C5 C4 C3 H3 185.6 175.3
C3 C4 C5 C13 182.3 179.9
C5 C4 C13 C14 281.4 270.0
C5 C4 C13 H113 41.4 30.0
C5 C4 C13 H213 162.5 150.0
C6 C5 C4 H5 180.0 180.0
C13 C4 C3 H3 7.9 355.2
C3 C4 C13 C5 177.7 180.0
C13 C4 C5 H5 356.0 5.1
C14 C13 C4 H113 240.0 240.0
C14 C13 C4 H213 118.8 120.0
C4 C13 C14 C15 193.2 180.0
C4 C13 C14 H114 313.2 300.0
C4 C13 C14 H214 73.0 60.0
H113 C13 C4 H213 238.8 240.0
H5 C5 C4 C13 356.0 5.1
C6 C10 S2 C12 249.3 283.6
S2 C10 C6 H110 120.0 119.9
S2 C10 C6 H210 240.5 239.3
C1 C6 C10 C5 176.1 182.2
C10 C6 C5 H5 352.5 10.4
H110 C10 C6 H210 120.5 119.4
S2 C10 C6 C5 179.5 159.7
C1 C6 C5 C10 184.1 178.1
C6 C5 C4 C13 176.0 185.1
C4 C5 C6 H5 180.0 180.0
S1 C7 C2 H17 120.0 120.5
S1 C7 C2 H27 240.5 239.5
C7 C2 C3 H3 0.4 342.0
S1 C7 H17 C2 239.0 238.1
S1 C7 H17 H27 119.5 119.1
S1 C7 H27 C2 120.7 121.9
S1 C7 H27 H17 240.4 240.9
C9 S1 C7 H17 345.4 351.8
C9 S1 C7 H27 105.9 110.8
H29 C9 H19 H39 120.0 120.0
H19 C9 H29 H39 240.0 240.0
H19 C9 H39 H29 120.0 120.0
H110 C10 S2 C12 9.3 43.2
S2 C10 H110 C6 239.1 239.2
S2 C10 H110 H210 119.6 119.2
C6 C10 H110 H210 240.5 240.0
H210 C10 S2 C12 129.7 162.4
S2 C10 H210 C6 120.6 121.6
S2 C10 H210 H110 240.3 240.8
C6 C10 H210 H110 119.7 119.2
S2 C12 H112 H212 120.0 120.0
S2 C12 H112 H312 240.0 240.0
H212 C12 H112 H312 120.0 120.0
S2 C12 H212 H112 240.0 240.0
S2 C12 H212 H312 120.0 120.0
H112 C12 H212 H312 240.0 240.0
S2 C12 H312 H112 120.0 120.0
S2 C12 H312 H212 240.0 240.0
H112 C12 H312 H212 120.0 120.0
C4 C13 C14 H113 120.0 120.0
C4 C13 C14 H213 241.2 240.0
H113 C13 C14 H213 121.2 120.0
C15 C14 C13 H114 240.0 240.0
C15 C14 C13 H214 120.2 120.0
C13 C14 C15 H115 307.9 54.7
C13 C14 C15 H215 72.6 294.7
H114 C14 C13 H214 240.2 240.0
C4 C13 H113 C14 237.8 240.0
C4 C13 H113 H213 118.9 120.0
C14 C13 H113 H213 241.1 240.0
H113 C13 C14 C15 73.2 60.0
H113 C13 C14 H114 193.2 180.0
H113 C13 C14 H214 313.0 300.0
C4 C13 H213 C14 121.4 120.0
C4 C13 H213 H113 240.7 240.0
C14 C13 H213 H113 119.3 120.0
H213 C13 C14 C15 312.0 300.0
H213 C13 C14 H114 72.0 60.0
H213 C13 C14 H214 191.8 180.0
C15 C14 C13 H113 73.2 60.0
C15 C14 C13 H213 312.0 300.0
C13 C14 C15 H114 120.0 120.0
C13 C14 C15 H214 239.8 240.0
H114 C14 C15 H214 119.8 120.0
H115 C15 C14 H215 235.4 120.0
H114 C14 C13 H113 193.2 180.0
H114 C14 C13 H213 72.0 60.0
C13 C14 H114 C15 240.5 240.0
C13 C14 H114 H214 120.2 120.0
C15 C14 H114 H214 239.8 240.0
H114 C14 C15 H115 187.9 294.7
H114 C14 C15 H215 312.6 174.7
H214 C14 C13 H113 313.0 300.0
H214 C14 C13 H213 191.8 180.0
C13 C14 H214 C15 119.7 120.0
C13 C14 H214 H114 239.9 240.0
C15 C14 H214 H114 120.2 120.0
H214 C14 C15 H115 68.2 174.7
H214 C14 C15 H215 192.8 54.7
C15 P1 O1 C16 168.6 272.9
H115 C15 C14 H114 187.9 294.7
H115 C15 C14 H214 68.2 174.7
C14 C15 H115 H215 116.0 240.0
H215 C15 C14 H114 312.6 174.7
H215 C15 C14 H214 192.8 54.7
C14 C15 H215 H115 242.8 120.0
O1 C16 C17 H116 120.0 120.0
O1 C16 C17 H216 240.5 240.0
H116 C16 C17 H216 120.5 119.9
H117 C17 C16 H217 240.0 240.0
H117 C17 C16 H317 120.0 120.0
H217 C17 C16 H317 240.0 240.0
O1 C16 H116 C17 239.0 240.0
O1 C16 H116 H216 119.4 120.1
C17 C16 H116 H216 240.5 240.1
H116 C16 C17 H117 187.4 60.0
H116 C16 C17 H217 307.5 179.9
H116 C16 C17 H317 67.5 299.9
O1 C16 H216 C17 120.7 120.0
O1 C16 H216 H116 240.4 239.9
C17 C16 H216 H116 119.7 119.9
H216 C16 C17 H117 66.9 300.1
H216 C16 C17 H217 186.9 60.0
H216 C16 C17 H317 307.0 180.0
H117 C17 C16 H116 187.4 60.0
H117 C17 C16 H216 66.9 300.1
C16 C17 H117 H217 120.0 119.9
C16 C17 H117 H317 240.0 240.0
H217 C17 H117 H317 120.0 120.0
H217 C17 C16 H116 307.5 179.9
H217 C17 C16 H216 186.9 60.0
C16 C17 H217 H117 240.0 240.1
C16 C17 H217 H317 120.0 120.0
H117 C17 H217 H317 240.1 239.9
H317 C17 C16 H116 67.5 299.9
H317 C17 C16 H216 307.0 180.0
C16 C17 H317 H117 120.0 120.0
C16 C17 H317 H217 240.0 240.0
H117 C17 H317 H217 120.0 120.0
C19 C161 O3 C20 180.0 180.4
O3 C161 C20 C21 180.0 180.0
O3 C161 C20 H26 -0.0 0.0
O3 C161 C19 C20 180.0 179.6
C19 C161 C20 C21 -0.0 359.7
C19 C161 C20 H26 180.0 179.7
C171 C21 C20 C161 -0.0 0.0
C21 C20 C161 H26 180.0 180.0
C161 C20 C21 H271 180.0 180.3
C19 C18 C171 H24 180.0 179.7
C171 C18 C19 H25 180.0 180.1
C18 C171 C21 C20 -0.0 0.3
C21 C171 C18 N1 180.0 179.7
C18 C171 C21 H271 180.0 180.0
C18 C171 N1 O4 180.0 0.0
C18 C171 N1 O5 -0.0 180.0
C18 C19 C161 C20 -0.0 0.3
C19 C18 C171 C21 -0.0 359.7
C19 C18 C171 N1 180.0 180.0
C171 C18 C19 H24 180.0 180.3
C161 C20 C21 H26 180.0 180.0
C20 C21 C171 N1 180.0 180.0
C171 C21 C20 H271 180.0 179.7
C161 C20 C21 C171 -0.0 0.0
C21 C171 C18 C19 -0.0 359.7
C18 C171 C21 N1 180.0 180.3
C21 C171 C18 H24 180.0 180.0
C171 C21 C20 H26 180.0 180.0
C20 C21 C171 H271 180.0 180.3
C21 C171 N1 O4 -0.0 180.3
C21 C171 N1 O5 180.0 0.2
N1 C171 C18 C19 180.0 180.0
C18 C171 N1 C21 180.0 179.7
N1 C171 C18 H24 -0.0 0.2
N1 C171 C21 C20 180.0 180.0
N1 C171 C21 H271 -0.0 359.7
O4 N1 C171 O5 180.0 180.0
C171 N1 O4 O5 180.0 180.0
C171 N1 O5 O4 180.0 180.0
C171 C18 H24 C19 180.0 179.7
H24 C18 C171 C21 180.0 180.0
H24 C18 C171 N1 -0.0 0.2
H24 C18 C19 H25 360.0 359.8
H25 C19 C161 C20 180.0 180.3
H25 C19 C18 H24 360.0 359.8
C161 C20 H26 C21 180.0 180.0
H26 C20 C21 H271 -0.0 0.3
C171 C21 H271 C20 180.0 180.3
H271 C21 C20 H26 -0.0 0.3
H271 C21 C171 N1 -0.0 359.7