PDB Chemical Component SX5

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for SX5

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O3	C18	1.218	1.209
C18	O4	1.352	1.342
C18	C17	1.503	1.507
O4	HO4	0.950	0.966
C16	C17	1.527	1.529
C17	H17	1.100	1.090
C17	H17A	1.100	1.090
C15	C16	1.518	1.507
C16	H16	1.100	1.090
C16	H16A	1.100	1.090
O2	C15	1.230	1.214
N2	C15	1.381	1.347
C14	N2	1.415	1.393
N2	HN2	1.000	0.971
C13	C14	1.404	1.388
C9	C14	1.424	1.403
C12	C13	1.399	1.381
C13	H13	1.079	1.080
C11	C12	1.402	1.385
C12	H12	1.080	1.080
BR1	C11	1.894	1.891
C11	C10	1.389	1.380
C10	C9	1.400	1.397
C10	H10	1.080	1.080
C9	C8	1.490	1.475
C8	N1	1.401	1.348
C8	O1	1.234	1.216
C6	N1	1.482	1.469
N1	C7	1.479	1.469
C4	C6	1.531	1.532
C6	H6	1.100	1.091
C6	H6A	1.100	1.090
C5	C4	1.520	1.530
C4	C3	1.527	1.531
C4	H4	1.100	1.089
C5	H5	1.100	1.091
C5	H5A	1.100	1.090
C5	H5B	1.100	1.090
C3	C2	1.518	1.530
C3	H3	1.100	1.090
C3	H3A	1.100	1.091
C2	C7	1.530	1.528
C7	H7	1.100	1.091
C7	H7A	1.100	1.090
C2	C1	1.523	1.530
C2	H2	1.100	1.090
C1	H1	1.100	1.090
C1	H1A	1.100	1.089
C1	H1B	1.100	1.090

Bond Angles for SX5

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O3	C18	O4	120.4	120.0
O3	C18	C17	126.4	120.0
O4	C18	C17	113.2	120.1
C18	O4	HO4	109.5	117.0
C18	C17	H17	108.6	109.4
C18	C17	H17A	108.0	109.4
C16	C17	H17	108.6	109.5
C16	C17	H17A	108.0	109.5
H17	C17	H17A	111.5	109.5
C15	C16	H16	108.0	109.4
C15	C16	H16A	107.0	109.4
H16	C16	H16A	113.1	109.5
C14	N2	HN2	117.3	120.0
C12	C13	H13	119.9	120.0
C11	C12	H12	120.1	119.8
BR1	C11	C10	118.2	119.8
C11	C10	C9	119.8	119.9
C11	C10	H10	120.1	120.1
C9	C10	H10	120.1	120.1
C10	C9	C8	117.3	120.2
C9	C8	N1	121.8	120.0
C9	C8	O1	116.2	119.9
O1	C8	N1	122.0	120.1
C8	N1	C7	115.8	120.6
C6	N1	C7	116.7	118.8
N1	C7	H7	107.4	109.6
N1	C7	H7A	105.9	109.6
C4	C6	H6	107.2	109.6
C4	C6	H6A	105.5	109.7
H6	C6	H6A	115.3	109.6
C5	C4	C3	108.6	109.5
C5	C4	H4	111.3	109.5
C3	C4	H4	107.6	109.5
C4	C3	C2	110.0	109.5
C4	C3	H3	109.3	109.5
C4	C3	H3A	109.2	109.4
H5	C5	H5A	109.4	109.5
H5	C5	H5B	109.4	109.4
H5A	C5	H5B	109.5	109.5
C2	C3	H3	109.3	109.5
C2	C3	H3A	109.2	109.5
C3	C2	C7	110.0	109.3
C3	C2	C1	109.4	109.5
C3	C2	H2	110.0	109.5
H3	C3	H3A	109.9	109.4
C2	C7	H7	107.4	109.5
C2	C7	H7A	106.0	109.6
H7	C7	H7A	114.6	109.6
C1	C2	H2	108.1	109.5
C2	C1	H1	109.5	109.4
C2	C1	H1A	109.5	109.5
C2	C1	H1B	109.5	109.5
H1	C1	H1A	109.5	109.5
H1	C1	H1B	109.4	109.5
H1A	C1	H1B	109.5	109.5

Torsion Angles for SX5

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O4	C18	O3	C17	179.8	180.3
O3	C18	O4	HO4	360.0	360.0
O3	C18	C17	H17	264.6	120.0
O3	C18	C17	H17A	25.8	240.0
O3	C18	O4	C17	180.2	179.7
O4	C18	C17	H17	84.8	299.7
O4	C18	C17	H17A	205.9	59.7
O3	C18	C17	O4	179.8	180.3
C17	C18	O4	HO4	179.8	180.3
C16	C17	C18	H17	240.0	240.0
C16	C17	C18	H17A	118.9	120.0
H17	C17	C18	H17A	238.9	240.1
HO4	O4	C18	C17	179.8	180.3
C18	C17	C16	H17	120.0	120.0
C18	C17	C16	H17A	241.1	240.0
H17	C17	C16	H17A	121.1	120.0
C18	C17	H17	H17A	119.0	119.9
C16	C17	H17	H17A	241.1	239.9
C18	C17	H17A	H17	240.7	240.1
C16	C17	H17A	H17	119.3	120.0
C15	C16	C17	H17	181.0	60.0
C15	C16	C17	H17A	59.9	300.0
H16	C16	C15	H16A	122.0	119.9
H16	C16	C17	H17	301.0	180.0
H16	C16	C17	H17A	179.9	60.0
C15	C16	H16	H16A	241.8	240.1
H16A	C16	C17	H17	63.0	300.0
H16A	C16	C17	H17A	301.9	180.0
C15	C16	H16A	H16	118.8	119.9
O2	C15	C16	H16	230.0	240.0
O2	C15	C16	H16A	108.0	120.0
N2	C15	C16	H16	49.6	60.0
N2	C15	C16	H16A	287.5	300.0
C13	C14	N2	HN2	225.9	155.2
C9	C14	N2	HN2	48.4	334.9
C11	C12	C13	H13	180.6	180.0
H12	C12	C13	H13	0.5	359.9
BR1	C11	C12	H12	359.8	0.1
BR1	C11	C10	C9	180.5	179.8
BR1	C11	C10	H10	0.5	360.0
C10	C11	C12	H12	179.9	180.0
C9	C10	C11	H10	180.0	179.8
C11	C10	C9	C8	180.6	180.0
C11	C10	C9	H10	180.0	180.2
C10	C9	C8	N1	245.4	63.8
C10	C9	C8	O1	66.5	243.8
C11	C10	H10	C9	180.0	179.8
H10	C10	C9	C8	0.5	359.8
C8	C9	C10	H10	0.5	359.8
O1	C8	C9	N1	181.1	180.0
C9	C8	N1	C7	177.8	175.3
C9	C8	N1	O1	181.2	180.0
C6	N1	C8	C7	201.6	180.3
C8	N1	C7	H7	357.7	353.4
C8	N1	C7	H7A	120.6	113.7
C9	C8	O1	N1	178.9	180.0
O1	C8	N1	C7	356.6	355.2
C8	N1	C6	C7	158.2	179.7
C6	N1	C7	H7	157.7	173.1
C6	N1	C7	H7A	280.6	293.4
C3	C2	C7	N1	308.2	305.6
C2	C7	N1	H7	240.0	240.2
C2	C7	N1	H7A	117.1	119.9
H7	C7	N1	H7A	237.1	239.7
C4	C6	N1	C7	328.6	306.7
H6	C6	C4	H6A	123.3	120.3
H6	C6	N1	C7	88.6	66.5
C4	C6	H6	H6A	242.9	239.6
H6A	C6	N1	C7	211.9	186.7
C4	C6	H6A	H6	118.0	120.4
C5	C4	C6	H6	41.4	54.8
C5	C4	C6	H6A	278.1	294.4
C3	C4	C5	H4	241.8	239.9
C5	C4	C3	C2	184.0	178.7
C5	C4	C3	H3	304.0	298.7
C5	C4	C3	H3A	64.2	58.7
C3	C4	C6	H6	279.9	294.9
C3	C4	C6	H6A	156.6	174.5
C5	C4	C3	H4	120.5	120.1
C2	C3	C4	H3	240.0	239.9
C2	C3	C4	H3A	119.8	120.0
C4	C3	C2	C7	58.9	61.3
C4	C3	C2	C1	182.1	181.3
C4	C3	C2	H2	300.7	301.4
H3	C3	C4	H3A	239.8	240.1
H4	C4	C6	H6	161.9	174.9
H4	C4	C6	H6A	38.6	54.5
C5	C4	H4	C3	241.1	239.9
H4	C4	C3	C2	63.4	58.6
H4	C4	C3	H3	183.5	178.6
H4	C4	C3	H3A	303.7	298.6
H5	C5	C4	C3	35.1	179.8
H5	C5	C4	H4	153.3	299.9
H5A	C5	H5	H5B	120.0	120.0
H5A	C5	C4	C3	155.1	299.8
H5A	C5	C4	H4	273.3	59.9
H5	C5	H5A	H5B	240.1	240.0
H5B	C5	C4	C3	275.1	59.8
H5B	C5	C4	H4	33.3	180.0
H5	C5	H5B	H5A	119.9	120.0
C2	C3	C4	H4	63.4	58.6
C4	C3	C2	H3	120.0	120.1
C4	C3	C2	H3A	240.2	240.1
H3	C3	C2	H3A	120.2	120.0
C3	C2	C7	H7	188.2	185.7
C3	C2	C7	H7A	65.4	65.5
C1	C2	C3	H2	241.4	239.9
C3	C2	C1	H1	100.8	60.0
C3	C2	C1	H1A	220.8	180.0
C3	C2	C1	H1B	340.8	300.1
H3	C3	C4	H4	183.5	178.6
C4	C3	H3	C2	239.6	239.9
C4	C3	H3	H3A	119.8	119.9
C2	C3	H3	H3A	240.2	240.0
H3	C3	C2	C7	299.0	301.2
H3	C3	C2	C1	62.1	61.2
H3	C3	C2	H2	180.7	181.4
H3A	C3	C4	H4	303.7	298.6
C4	C3	H3A	C2	120.3	120.0
C4	C3	H3A	H3	240.1	240.0
C2	C3	H3A	H3	119.9	120.0
H3A	C3	C2	C7	178.7	181.2
H3A	C3	C2	C1	301.9	301.3
H3A	C3	C2	H2	60.5	61.4
N1	C7	C2	H7	120.0	119.9
N1	C7	C2	H7A	242.9	240.1
C7	C2	C3	H3	299.0	301.2
C7	C2	C3	H3A	178.7	181.2
C3	C2	C7	C1	121.7	120.0
C3	C2	C7	H2	240.3	240.1
H7	C7	C2	H7A	122.9	120.2
N1	C7	H7	H7A	117.4	120.3
C2	C7	H7	H7A	242.6	239.8
N1	C7	H7A	H7	241.8	239.7
C2	C7	H7A	H7	118.2	120.2
C1	C2	C3	H3	62.1	61.2
C1	C2	C3	H3A	301.9	301.3
C3	C2	C1	C7	237.9	240.1
C3	C2	C1	H2	119.8	120.1
C1	C2	C7	H7	66.5	65.7
C1	C2	C7	H7A	303.6	305.5
H1	C1	C2	H1A	239.9	240.0
H1	C1	C2	H1B	120.0	120.0
H1A	C1	C2	H1B	240.0	240.0
H2	C2	C3	H3	180.7	181.4
H2	C2	C3	H3A	60.5	61.4
C3	C2	H2	C7	119.8	119.8
C3	C2	H2	C1	240.6	239.9
H2	C2	C7	H7	308.0	305.6
H2	C2	C7	H7A	185.1	185.4
H2	C2	C1	H1	341.0	299.9
H2	C2	C1	H1A	101.0	59.9
H2	C2	C1	H1B	221.0	179.9
H1	C1	C2	H2	341.0	299.9
C2	C1	H1	H1A	120.0	120.0
C2	C1	H1	H1B	240.0	240.0
H1A	C1	H1	H1B	120.0	120.0
H1A	C1	C2	H2	101.0	59.9
C2	C1	H1A	H1	240.0	240.0
C2	C1	H1A	H1B	120.0	120.0
H1	C1	H1A	H1B	240.0	240.0
H1B	C1	C2	H2	221.0	179.9
C2	C1	H1B	H1	120.0	120.0
C2	C1	H1B	H1A	240.0	240.0
H1	C1	H1B	H1A	120.0	120.0