PDB Chemical Component SWE

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for SWE

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 O1 1.407 1.429
C1 C2 1.513 1.530
C1 O5 1.421 1.429
O1 C2' 1.409 1.428
C2 C3 1.516 1.532
C2 O2 1.403 1.429
C3 C4 1.524 1.532
C3 O3 1.408 1.429
C4 O4 1.407 1.429
C4 C5 1.532 1.531
C5 C6 1.522 1.531
C5 O5 1.411 1.429
C6 O6 1.413 1.429
C1' C2' 1.509 1.529
C1' O1' 1.410 1.429
C2' O2' 1.414 1.445
C2' C3' 1.519 1.545
O2' C5' 1.425 1.445
C3' C4' 1.511 1.546
C3' O3' 1.416 1.429
C4' C5' 1.525 1.549
C4' O4' 1.419 1.428
C5' C6' 1.522 1.529
C6' O6' 1.400 1.429
C1 H1 1.100 1.090
C2 H2 1.100 1.090
O2 HO2 0.950 0.968
C3 H3 1.100 1.090
O3 HO3 0.950 0.967
C4 H4 1.100 1.089
O4 HO4 0.950 0.967
C5 H5 1.100 1.090
C6 H6A 1.100 1.090
C6 H6 1.100 1.090
O6 HO6 0.950 0.967
C1' H1' 1.100 1.091
C1' H1'A 1.101 1.090
O1' HO1' 0.950 0.967
C3' H3' 1.100 1.089
O3' HO3' 0.950 0.967
C4' H4' 1.100 1.090
O4' HO4' 0.950 0.967
C5' H5' 1.100 1.090
C6' H6' 1.100 1.090
C6' H6'A 1.100 1.090
O6' HO6' 0.950 0.967

Bond Angles for SWE

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 O1 106.1 109.5
O5 C1 O1 110.2 109.5
C1 O1 C2' 118.0 114.0
O1 C1 H1 109.9 109.5
C2 C1 O5 112.5 109.4
C1 C2 C3 109.2 109.2
C1 C2 O2 108.0 109.5
C2 C1 H1 108.4 109.5
C1 C2 H2 109.3 109.5
C1 O5 C5 116.4 114.1
O5 C1 H1 109.7 109.5
O1 C2' C1' 109.7 110.4
O1 C2' O2' 106.2 110.4
O1 C2' C3' 116.5 110.3
C3 C2 O2 110.3 109.5
C2 C3 C4 106.3 109.0
C2 C3 O3 109.4 109.5
C3 C2 H2 109.2 109.5
C2 C3 H3 109.2 109.5
O2 C2 H2 110.8 109.6
C2 O2 HO2 109.5 114.0
C4 C3 O3 111.9 109.6
C3 C4 O4 109.1 109.5
C3 C4 C5 110.3 109.2
C4 C3 H3 109.1 109.6
C3 C4 H4 108.5 109.5
O3 C3 H3 110.8 109.7
C3 O3 HO3 109.5 114.0
C5 C4 O4 110.3 109.5
O4 C4 H4 110.1 109.5
C4 O4 HO4 109.5 114.0
C4 C5 C6 111.4 109.5
C4 C5 O5 110.8 109.4
C5 C4 H4 108.4 109.6
C4 C5 H5 108.4 109.5
C6 C5 O5 107.5 109.5
C5 C6 O6 110.4 109.5
C6 C5 H5 108.6 109.5
C5 C6 H6A 109.2 109.4
C5 C6 H6 109.2 109.5
O5 C5 H5 110.1 109.5
O6 C6 H6A 109.3 109.5
O6 C6 H6 109.2 109.5
C6 O6 HO6 109.5 114.0
O1' C1' C2' 106.4 109.5
C1' C2' O2' 109.3 110.3
C1' C2' C3' 107.7 110.4
C2' C1' H1' 110.2 109.4
C2' C1' H1'A 110.2 109.5
O1' C1' H1' 110.3 109.5
O1' C1' H1'A 110.2 109.5
C1' O1' HO1' 109.5 114.0
O2' C2' C3' 107.2 104.9
C2' O2' C5' 108.4 105.3
C2' C3' C4' 105.5 104.1
C2' C3' O3' 110.5 110.5
C2' C3' H3' 109.5 110.5
O2' C5' C4' 105.5 104.7
O2' C5' C6' 112.0 110.4
O2' C5' H5' 110.3 110.3
O3' C3' C4' 110.5 110.5
C3' C4' C5' 103.8 104.0
C3' C4' O4' 111.2 110.5
C4' C3' H3' 109.6 110.5
C3' C4' H4' 108.1 110.5
O3' C3' H3' 111.0 110.6
C3' O3' HO3' 109.5 114.0
O4' C4' C5' 116.0 110.6
C4' C5' C6' 111.0 110.5
C5' C4' H4' 107.9 110.5
C4' C5' H5' 109.0 110.3
O4' C4' H4' 109.3 110.6
C4' O4' HO4' 109.5 114.0
C5' C6' O6' 113.9 109.5
C6' C5' H5' 109.0 110.5
C5' C6' H6' 108.3 109.5
C5' C6' H6'A 108.4 109.5
O6' C6' H6' 108.4 109.5
O6' C6' H6'A 108.4 109.4
C6' O6' HO6' 109.5 114.0
H6 C6 H6A 109.5 109.5
H1'A C1' H1' 109.5 109.4
H6' C6' H6'A 109.5 109.4

Torsion Angles for SWE

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 C1 O1 O5 122.0 119.9
O1 C1 C2 C3 295.5 297.7
O1 C1 C2 O2 55.5 57.5
C2 C1 O1 H1 243.0 239.9
O1 C1 C2 H2 176.1 177.7
O1 C1 O5 C5 66.1 58.8
O5 C1 O1 H1 121.0 120.0
C1 O1 C2' C1' 109.7 53.5
C1 O1 C2' O2' 227.7 175.8
C1 O1 C2' C3' 347.0 291.2
O5 C1 C2 O1 120.6 120.0
C2 C1 O1 C2' 197.4 197.0
O1 C1 C2 H1 118.0 120.1
C2 C1 O5 C5 307.9 298.8
O5 C1 C2 H1 238.6 240.0
C3 C2 C1 O2 240.1 240.1
C1 C2 C3 C4 299.8 303.0
C1 C2 C3 O3 178.8 183.1
C3 C2 C1 H2 119.4 119.9
C1 C2 C3 H3 57.4 62.8
O2 C2 C1 H2 239.4 239.8
C1 C2 O2 HO2 180.0 60.1
C2 C1 O5 O1 241.8 240.0
O5 C1 O1 C2' 75.4 77.1
O1 C1 O5 H1 238.9 240.0
O5 C1 C2 C3 56.1 57.6
O5 C1 C2 O2 176.1 177.5
C2 C1 O5 H1 120.7 120.0
O5 C1 C2 H2 296.7 297.7
C4 C5 O5 C1 50.9 61.2
C6 C5 O5 C1 172.8 181.1
C1 O5 C5 H5 290.9 301.2
C2' O1 C1 H1 314.4 317.1
O1' C1' C2' O1 158.4 54.2
C1' C2' O1 O2' 242.0 237.7
C1' C2' O1 C3' 122.7 122.3
O1 C2' C1' H1' 278.0 294.2
O1 C2' C1' H1'A 38.9 174.3
O2' C2' O1 C3' 240.6 244.5
O1 C2' O2' C5' 101.1 78.3
O1 C2' C3' C4' 247.5 265.2
O1 C2' C3' O3' 128.0 146.5
O1 C2' C3' H3' 5.4 23.8
C3 C2 C1 O1 295.5 297.7
C3 C2 C1 O5 56.1 57.6
C1 C2 C3 O2 118.5 119.9
C3 C2 C1 H1 177.6 177.6
C1 C2 C3 H2 240.6 240.1
O2 C2 C3 H2 122.0 120.2
C3 C2 O2 HO2 299.3 179.7
C4 C3 C2 O3 121.0 119.9
C2 C3 C4 O4 181.9 176.9
C2 C3 C4 C5 60.5 57.0
C4 C3 C2 H3 242.4 240.2
C2 C3 C4 H4 301.9 297.0
O3 C3 C2 H3 121.4 120.3
C2 C3 O3 HO3 180.0 300.0
O2 C2 C1 O1 55.5 57.5
O2 C2 C1 O5 176.1 177.5
C1 C2 O2 C3 240.8 240.3
O2 C2 C1 H1 297.5 297.5
C1 C2 O2 H2 119.7 120.1
O2 C2 C3 C4 181.3 183.1
O2 C2 C3 O3 60.2 63.3
C3 C2 O2 H2 238.9 239.8
O2 C2 C3 H3 298.9 303.0
C4 C3 C2 O2 181.3 183.1
C2 C3 C4 O3 240.6 240.2
C4 C3 C2 H2 59.2 62.9
C2 C3 C4 H3 117.7 119.8
O3 C3 C4 H3 237.1 239.6
C4 C3 O3 HO3 62.4 180.5
C5 C4 C3 O4 238.6 240.1
O4 C4 C3 H4 240.0 239.9
C3 C4 O4 HO4 180.0 60.0
C3 C4 C5 C6 185.0 182.4
C3 C4 C5 O5 304.6 302.3
C5 C4 C3 H4 118.7 120.0
C3 C4 C5 H5 65.6 62.4
O3 C3 C2 O2 60.2 63.3
C2 C3 O3 C4 117.6 119.5
O3 C3 C2 H2 298.2 303.1
C2 C3 O3 H3 239.6 239.8
O3 C3 C4 O4 301.3 296.7
O3 C3 C4 C5 179.9 176.8
C4 C3 O3 H3 122.0 120.3
O3 C3 C4 H4 61.2 56.8
O4 C4 C3 O3 301.3 296.7
C3 C4 O4 C5 238.6 240.3
O4 C4 C3 H3 64.2 57.1
C3 C4 O4 H4 119.0 120.1
O4 C4 C5 C6 64.4 62.5
O4 C4 C5 O5 184.0 182.5
C5 C4 O4 H4 240.3 239.7
O4 C4 C5 H5 305.0 302.5
C1 O5 C5 C4 50.9 61.2
C5 C4 C3 O3 179.9 176.8
C3 C4 C5 O4 120.6 119.9
C5 C4 C3 H3 302.9 297.2
C3 C4 C5 H4 241.3 240.1
O4 C4 C5 H4 120.7 120.2
C5 C4 O4 HO4 301.4 179.6
C6 C5 C4 O5 240.4 240.1
C4 C5 C6 O6 31.8 185.0
C6 C5 C4 H5 119.4 120.0
C4 C5 C6 H6A 152.0 305.0
C4 C5 C6 H6 271.7 65.0
O5 C5 C4 H5 239.0 239.9
C1 O5 C5 C6 172.8 181.1
C6 C5 C4 O4 64.4 62.5
C4 C5 C6 O5 121.5 119.9
C6 C5 C4 H4 303.8 302.3
C4 C5 C6 H5 240.7 240.0
O5 C5 C6 H5 119.1 120.0
O6 C6 C5 H6A 239.8 240.0
O6 C6 C5 H6 120.1 120.0
C5 C6 O6 HO6 180.0 180.0
H6 C6 C5 H6A 119.7 120.0
C5 O5 C1 O1 66.1 58.8
C5 O5 C1 H1 187.2 178.8
O5 C5 C4 O4 184.0 182.5
C4 C5 O5 C6 238.1 240.1
O5 C5 C4 H4 63.4 62.3
C4 C5 O5 H5 120.0 120.0
O5 C5 C6 O6 270.3 65.1
C6 C5 O5 H5 241.9 240.0
O5 C5 C6 H6A 30.5 185.1
O5 C5 C6 H6 150.2 305.1
O6 C6 C5 O5 270.3 65.1
O6 C6 C5 H5 151.2 305.0
C5 C6 O6 H6A 120.2 120.0
C5 C6 O6 H6 239.9 240.0
H6 C6 O6 H6A 240.3 239.9
O1 C2' C1' O2' 116.1 122.3
O1 C2' C1' C3' 232.3 237.7
O1' C1' C2' H1' 240.5 120.0
O1' C1' C2' H1'A 119.5 239.9
C2' C1' O1' HO1' 180.0 180.1
O2' C2' C1' C3' 116.2 115.5
C1' C2' O2' C5' 219.3 200.6
C1' C2' C3' C4' 123.8 142.9
C1' C2' C3' O3' 4.3 24.2
C1' C2' C3' H3' 241.7 261.5
H1'A C1' C2' H1' 121.0 240.0
O1 C2' C1' O1' 158.4 54.2
O1' C1' C2' O2' 42.4 291.9
O1' C1' C2' C3' 286.2 176.5
C2' C1' O1' H1' 119.5 240.0
C2' C1' O1' H1'A 240.5 120.1
H1'A C1' O1' H1' 239.0 120.0
O1 C2' O2' C1' 241.7 237.7
O1 C2' O2' C3' 125.2 118.8
C1' C2' O2' C3' 243.5 241.1
O2' C2' C1' H1' 161.9 172.0
O2' C2' C1' H1'A 282.9 52.0
O2' C2' C3' C4' 6.3 24.0
O2' C2' C3' O3' 246.8 265.4
O2' C2' C3' H3' 124.2 142.6
C2' O2' C5' C4' 32.1 40.4
C2' O2' C5' C6' 153.0 159.4
C2' O2' C5' H5' 274.5 281.7
O1 C2' C3' C1' 123.7 122.3
O1 C2' C3' O2' 241.2 241.1
C1' C2' C3' O2' 117.5 118.9
C3' C2' C1' H1' 45.7 56.5
C3' C2' C1' H1'A 166.7 296.5
C3' C2' O2' C5' 335.8 319.5
O3' C3' C2' C4' 240.5 241.4
C2' C3' C4' C5' 12.2 359.9
C2' C3' C4' O4' 137.7 118.7
C4' C3' C2' H3' 242.1 241.4
C2' C3' C4' H4' 257.7 241.4
O3' C3' C2' H3' 122.6 122.7
C2' C3' O3' HO3' 180.0 180.0
C5' O2' C2' C3' 335.8 319.5
C3' C4' C5' O2' 333.3 336.1
O4' C4' C5' O2' 211.0 217.5
C4' C5' O2' C6' 239.1 241.1
O2' C5' C4' H4' 87.9 94.7
C4' C5' O2' H5' 117.5 118.7
O2' C5' C6' O6' 355.7 66.4
C6' C5' O2' H5' 238.4 237.6
O2' C5' C6' H6' 116.3 186.4
O2' C5' C6' H6'A 235.0 306.4
C2' C3' C4' O3' 240.6 241.3
C2' C3' C4' H3' 117.8 118.6
O2' C5' C4' C3' 333.3 336.1
O3' C3' C4' H3' 237.3 237.3
C4' C3' O3' HO3' 63.6 65.4
O4' C4' C3' C5' 125.5 118.7
C3' C4' C5' C6' 211.8 217.3
C5' C4' C3' H4' 114.5 118.6
C3' C4' C5' H5' 91.8 94.8
O4' C4' C3' H4' 239.9 237.3
C3' C4' O4' HO4' 180.0 180.0
C2' C3' O3' C4' 116.4 114.7
C2' C3' O3' H3' 238.3 237.3
O3' C3' C4' C5' 131.7 118.6
O3' C3' C4' O4' 257.1 237.3
C4' C3' O3' H3' 121.9 122.6
O3' C3' C4' H4' 17.2 0.0
O2' C5' C4' C6' 121.6 118.9
O2' C5' C4' H5' 241.6 241.3
C3' C4' C5' O4' 122.4 118.7
C5' C4' C3' H3' 254.4 241.3
C3' C4' C5' H4' 245.4 241.4
O4' C4' C5' H4' 123.0 122.7
C5' C4' O4' HO4' 298.4 294.7
C4' C5' C6' O6' 113.3 181.8
C6' C5' C4' H5' 120.0 122.4
C4' C5' C6' H6' 234.0 301.8
C4' C5' C6' H6'A 352.7 61.8
O2' C5' C4' O4' 211.0 217.5
C3' C4' O4' C5' 241.6 245.3
O4' C4' C3' H3' 19.8 0.0
C3' C4' O4' H4' 119.3 122.7
O4' C4' C5' C6' 89.4 98.6
C5' C4' O4' H4' 237.7 237.3
O4' C4' C5' H5' 329.4 336.2
O2' C5' C6' C4' 242.4 244.6
O2' C5' C6' H5' 122.4 122.3
C6' C5' C4' H4' 326.4 335.8
C4' C5' C6' H5' 240.0 237.7
O6' C6' C5' H6' 239.4 240.0
O6' C6' C5' H6'A 120.6 120.0
C5' C6' O6' HO6' 180.0 179.9
H6' C6' C5' H6'A 241.3 240.0
O6' C6' C5' H5' 233.3 304.1
C5' C6' O6' H6' 120.6 120.1
C5' C6' O6' H6'A 239.4 240.0
H6' C6' O6' H6'A 118.7 119.9
C2 C1 H1 O1 115.6 120.1
O5 C1 H1 O1 238.7 240.0
H1 C1 O1 C2' 314.4 317.1
C2 C1 H1 O5 236.9 240.1
H1 C1 C2 C3 177.6 177.6
H1 C1 C2 O2 297.5 297.5
H1 C1 C2 H2 58.1 57.7
H1 C1 O5 C5 187.2 178.8
H2 C2 C1 O1 176.1 177.7
H2 C2 C1 O5 296.7 297.7
C1 C2 H2 C3 119.4 119.7
C1 C2 H2 O2 241.1 239.9
H2 C2 C1 H1 58.1 57.7
C3 C2 H2 O2 121.7 120.2
H2 C2 C3 C4 59.2 62.9
H2 C2 C3 O3 298.2 303.1
H2 C2 C3 H3 176.8 182.8
H2 C2 O2 HO2 60.4 299.9
HO2 O2 C2 H2 60.4 299.9
H3 C3 C2 O2 298.9 303.0
C2 C3 H3 C4 244.2 240.5
C2 C3 H3 O3 120.5 120.2
H3 C3 C2 H2 176.8 182.8
C4 C3 H3 O3 236.4 239.7
H3 C3 C4 O4 64.2 57.1
H3 C3 C4 C5 302.9 297.2
H3 C3 C4 H4 184.2 177.2
H3 C3 O3 HO3 300.4 60.2
HO3 O3 C3 H3 300.4 60.2
H4 C4 C3 O3 61.2 56.8
C3 C4 H4 O4 240.7 239.9
C3 C4 H4 C5 119.9 119.7
H4 C4 C3 H3 184.2 177.2
C5 C4 H4 O4 120.8 120.2
H4 C4 O4 HO4 61.0 299.9
H4 C4 C5 C6 303.8 302.3
H4 C4 C5 O5 63.4 62.3
H4 C4 C5 H5 184.3 182.3
HO4 O4 C4 H4 61.0 299.9
H5 C5 C4 O4 305.0 302.5
C4 C5 H5 C6 121.2 120.0
C4 C5 H5 O5 238.6 240.0
H5 C5 C4 H4 184.3 182.3
C6 C5 H5 O5 117.5 120.0
H5 C5 C6 O6 151.2 305.0
H5 C5 C6 H6A 271.3 65.0
H5 C5 C6 H6 31.0 185.0
H6A C6 C5 O5 30.5 185.1
C5 C6 H6A O6 239.1 240.0
H6A C6 C5 H5 271.3 65.0
C5 C6 H6A H6 119.6 120.0
O6 C6 H6A H6 240.4 240.0
H6A C6 O6 HO6 59.9 60.1
H6 C6 C5 O5 150.2 305.1
C5 C6 H6 O6 120.8 120.0
H6 C6 C5 H5 31.0 185.0
C5 C6 H6 H6A 240.4 240.0
O6 C6 H6 H6A 119.6 120.1
H6 C6 O6 HO6 300.2 300.0
HO6 O6 C6 H6A 59.9 60.1
HO6 O6 C6 H6 300.2 300.0
O1' C1' H1' C2' 117.1 240.0
H1' C1' C2' O2' 161.9 172.0
H1' C1' C2' C3' 45.7 56.5
C2' C1' H1' H1'A 121.4 240.0
O1' C1' H1' H1'A 238.6 120.0
H1' C1' O1' HO1' 60.5 300.1
O1' C1' H1'A C2' 242.9 120.1
H1'A C1' C2' O2' 282.9 52.0
H1'A C1' C2' C3' 166.7 296.5
C2' C1' H1'A H1' 238.6 120.0
O1' C1' H1'A H1' 121.5 240.0
H1'A C1' O1' HO1' 299.5 60.0
HO1' O1' C1' C2' 180.0 180.1
HO1' O1' C1' H1' 60.5 300.1
HO1' O1' C1' H1'A 299.5 60.0
C2' C3' H3' C4' 244.7 245.4
C2' C3' H3' O3' 122.3 122.7
O3' C3' H3' C4' 122.4 122.6
H3' C3' C4' C5' 254.4 241.3
H3' C3' C4' O4' 19.8 0.0
H3' C3' C4' H4' 139.9 122.7
H3' C3' O3' HO3' 301.8 302.7
HO3' O3' C3' C4' 63.6 65.4
HO3' O3' C3' H3' 301.8 302.7
C3' C4' H4' C5' 111.7 114.6
C3' C4' H4' O4' 238.7 237.3
H4' C4' C3' H3' 139.9 122.7
O4' C4' H4' C5' 233.0 237.2
H4' C4' C5' C6' 326.4 335.8
H4' C4' C5' H5' 206.4 213.4
H4' C4' O4' HO4' 60.7 57.3
HO4' O4' C4' C5' 298.4 294.7
HO4' O4' C4' H4' 60.7 57.3
O2' C5' H5' C4' 115.4 115.2
O2' C5' H5' C6' 236.6 237.7
C4' C5' H5' C6' 121.2 122.4
H5' C5' C4' H4' 206.4 213.4
H5' C5' C6' O6' 233.3 304.1
H5' C5' C6' H6' 354.0 64.2
H5' C5' C6' H6'A 112.7 184.1
C5' C6' H6' O6' 236.0 239.9
H6' C6' C5' H5' 354.0 64.2
C5' C6' H6' H6'A 118.0 120.0
O6' C6' H6' H6'A 242.0 240.1
H6' C6' O6' HO6' 59.4 59.9
C5' C6' H6'A O6' 124.0 120.0
H6'A C6' C5' H5' 112.7 184.1
C5' C6' H6'A H6' 242.0 240.0
O6' C6' H6'A H6' 118.0 120.0
H6'A C6' O6' HO6' 300.6 300.0
HO6' O6' C6' H6' 59.4 59.9
HO6' O6' C6' H6'A 300.6 300.0