PDB Chemical Component SVZ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for SVZ

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N	CA	1.475	1.443
CA	C	1.540	1.515
C	O	1.223	1.225
CA	CB	1.533	1.522
CB	OG	1.429	1.418
OG	P1	1.609	1.626
O4	P1	1.516	1.507
P1	O2	1.523	1.625
P1	N3	1.745	1.658
N3	C5	1.454	1.455
C5	C7	1.519	1.521
C5	C6	1.528	1.522
C	OXT	1.331	1.358
N	HN1	1.020	1.005
N	HN2	1.020	1.006
CA	HA	1.115	1.095
CB	HBC1	1.115	1.095
CB	HBC2	1.115	1.095
OXT	HOT	0.950	0.982
O2	H2	0.950	0.981
N3	H3	1.020	1.020
C5	H5	1.115	1.096
C7	H7C1	1.115	1.094
C7	H7C2	1.115	1.097
C7	H7C3	1.115	1.096
C6	H6C1	1.115	1.096
C6	H6C2	1.115	1.095
C6	H6C3	1.115	1.096

Bond Angles for SVZ

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N	CA	C	111.8	107.3
N	CA	CB	111.5	111.7
CA	N	HN1	111.3	119.0
CA	N	HN2	111.8	118.9
N	CA	HA	107.7	105.3
CA	C	O	119.3	125.1
C	CA	CB	113.1	110.6
CA	C	OXT	119.3	111.9
C	CA	HA	105.9	110.0
O	C	OXT	121.5	122.9
CA	CB	OG	111.5	109.1
CB	CA	HA	106.3	111.7
CA	CB	HBC1	111.4	111.0
CA	CB	HBC2	111.5	111.6
CB	OG	P1	108.8	120.3
OG	CB	HBC1	111.5	107.8
OG	CB	HBC2	111.5	108.7
OG	P1	O4	102.5	111.7
OG	P1	O2	135.8	102.0
OG	P1	N3	66.4	108.0
O4	P1	O2	119.2	111.3
O4	P1	N3	107.7	116.4
O2	P1	N3	110.0	106.3
P1	O2	H2	135.8	118.6
P1	N3	C5	117.3	118.7
P1	N3	H3	109.4	115.5
N3	C5	C7	109.5	109.1
N3	C5	C6	111.7	108.9
C5	N3	H3	109.4	108.2
N3	C5	H5	108.7	108.0
C7	C5	C6	111.8	111.7
C7	C5	H5	108.7	109.6
C5	C7	H7C1	112.2	110.9
C5	C7	H7C2	112.2	111.4
C5	C7	H7C3	109.5	110.8
C6	C5	H5	106.4	109.4
C5	C6	H6C1	111.4	110.7
C5	C6	H6C2	111.4	110.9
C5	C6	H6C3	111.7	111.4
C	OXT	HOT	119.2	115.2
HN1	N	HN2	111.3	120.7
HBC1	CB	HBC2	98.9	108.5
H7C1	C7	H7C2	98.2	108.1
H7C1	C7	H7C3	112.2	108.0
H7C2	C7	H7C3	112.2	107.5
H6C1	C6	H6C2	99.0	108.1
H6C1	C6	H6C3	111.4	107.5
H6C2	C6	H6C3	111.3	108.2

Torsion Angles for SVZ

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N	CA	C	O	60.1	324.1
C	CA	N	CB	127.8	121.3
N	CA	C	OXT	240.9	146.4
C	CA	N	HA	244.0	242.8
N	CA	CB	OG	192.6	178.1
CB	CA	N	HA	116.3	121.5
N	CA	CB	HBC1	67.3	59.5
N	CA	CB	HBC2	317.8	298.3
HN1	N	CA	HN2	234.7	166.7
N	CA	C	CB	233.1	238.0
C	CA	N	HN1	54.7	7.2
C	CA	N	HN2	180.0	200.5
N	CA	C	HA	117.1	114.1
O	C	CA	OXT	179.2	177.7
C	CA	CB	OG	65.5	58.7
CB	CA	C	HA	243.9	236.1
C	CA	CB	HBC1	300.2	300.1
C	CA	CB	HBC2	190.8	178.9
CA	C	OXT	HOT	180.0	177.8
O	C	CA	CB	186.9	86.1
CA	C	O	OXT	180.8	182.5
O	C	CA	HA	303.0	210.0
O	C	OXT	HOT	0.8	0.0
N	CA	CB	C	127.1	119.4
CB	CA	N	HN1	287.0	245.9
CB	CA	N	HN2	52.2	79.2
N	CA	CB	HA	242.9	242.3
CB	CA	C	O	186.9	86.1
CB	CA	C	OXT	7.7	268.4
C	CA	CB	HA	115.8	122.9
CA	CB	OG	P1	208.4	180.0
OG	CB	CA	HBC1	125.3	118.7
OG	CB	CA	HBC2	234.7	239.8
HBC1	CB	CA	HBC2	109.4	121.1
OG	CB	CA	HA	309.7	295.8
CA	CB	OG	HBC1	234.7	239.3
CA	CB	OG	HBC2	125.3	122.0
CB	OG	P1	O4	66.5	170.7
CB	OG	P1	O2	265.6	51.8
CB	OG	P1	N3	170.6	300.0
HBC1	CB	OG	HBC2	250.5	242.6
P1	OG	CB	HBC1	333.6	300.7
P1	OG	CB	HBC2	83.1	58.0
O4	P1	OG	O2	160.9	118.9
O4	P1	OG	N3	255.9	230.7
O2	P1	OG	N3	95.0	111.7
OG	P1	O2	H2	180.0	72.7
OG	P1	N3	C5	118.6	293.4
OG	P1	N3	H3	353.3	162.3
OG	P1	O4	O2	195.1	246.8
OG	P1	O4	N3	68.9	124.8
O2	P1	O4	N3	233.8	238.0
O4	P1	O2	H2	21.4	313.5
O4	P1	N3	C5	214.8	60.0
O4	P1	N3	H3	89.5	288.9
OG	P1	O2	O4	158.6	119.2
OG	P1	O2	N3	283.7	246.9
O4	P1	O2	N3	125.1	127.7
O2	P1	N3	C5	346.2	184.6
O2	P1	N3	H3	220.9	53.5
OG	P1	N3	O4	263.8	233.4
OG	P1	N3	O2	132.4	108.8
O4	P1	N3	O2	228.6	235.4
N3	P1	O2	H2	256.3	185.8
P1	N3	C5	C7	112.3	271.0
P1	N3	C5	C6	236.7	148.7
C5	N3	P1	H3	125.3	131.1
P1	N3	C5	H5	353.7	30.0
P1	N3	C5	H3	234.7	225.8
C7	C5	N3	C6	235.6	122.2
C7	C5	N3	H5	118.6	241.0
N3	C5	C7	H7C1	54.7	179.1
N3	C5	C7	H7C2	305.3	299.5
N3	C5	C7	H7C3	180.0	59.1
C6	C5	N3	H5	242.9	118.8
N3	C5	C6	H6C1	54.7	301.1
N3	C5	C6	H6C2	305.2	181.1
N3	C5	C6	H6C3	180.0	60.6
N3	C5	C7	C6	124.4	239.5
C7	C5	N3	H3	237.6	45.2
N3	C5	C7	H5	241.4	118.0
C6	C5	C7	H5	117.0	238.5
C7	C5	C6	H6C1	177.8	180.5
C7	C5	C6	H6C2	68.4	60.5
C7	C5	C6	H6C3	303.1	300.0
H7C1	C7	C5	H7C2	109.4	239.5
H7C1	C7	C5	H7C3	234.7	120.0
H7C2	C7	C5	H7C3	125.3	240.4
N3	C5	C6	C7	236.9	120.6
C6	C5	N3	H3	1.9	283.0
N3	C5	C6	H5	118.5	242.2
C7	C5	C6	H5	241.6	121.5
C6	C5	C7	H7C1	290.4	299.6
C6	C5	C7	H7C2	180.9	60.1
C6	C5	C7	H7C3	55.6	179.6
H6C1	C6	C5	H6C2	109.5	120.0
H6C1	C6	C5	H6C3	234.7	240.5
H6C2	C6	C5	H6C3	125.2	120.5
CA	C	OXT	O	179.2	177.8
OXT	C	CA	CB	7.7	268.4
OXT	C	CA	HA	123.8	32.3
HN1	N	CA	C	54.7	7.2
HN1	N	CA	CB	287.0	245.9
CA	N	HN1	HN2	125.5	193.6
HN1	N	CA	HA	170.7	124.4
HN2	N	CA	C	180.0	200.5
HN2	N	CA	CB	52.2	79.2
CA	N	HN2	HN1	234.7	166.4
HN2	N	CA	HA	296.0	317.7
N	CA	HA	C	240.2	244.7
N	CA	HA	CB	119.6	121.4
HA	CA	N	HN1	170.7	124.4
HA	CA	N	HN2	296.0	317.7
HA	CA	C	O	303.0	210.0
C	CA	HA	CB	239.4	236.7
HA	CA	C	OXT	123.8	32.3
HA	CA	CB	OG	309.7	295.8
HA	CA	CB	HBC1	184.4	177.1
HA	CA	CB	HBC2	75.0	56.0
CA	CB	HBC1	OG	125.3	119.5
HBC1	CB	CA	HA	184.4	177.1
CA	CB	HBC1	HBC2	242.7	237.0
HBC1	CB	OG	P1	333.6	300.7
OG	CB	HBC1	HBC2	117.4	117.5
CA	CB	HBC2	OG	234.7	239.6
HBC2	CB	CA	HA	75.0	56.0
CA	CB	HBC2	HBC1	117.3	122.6
HBC2	CB	OG	P1	83.1	58.0
OG	CB	HBC2	HBC1	242.6	243.1
H2	O2	P1	N3	256.3	185.8
P1	N3	H3	C5	129.7	135.9
H3	N3	C5	C7	237.6	45.2
H3	N3	C5	C6	1.9	283.0
H3	N3	C5	H5	119.0	164.2
N3	C5	H5	C7	119.1	241.3
N3	C5	H5	C6	239.6	118.4
H5	C5	N3	H3	119.0	164.2
C7	C5	H5	C6	120.4	237.2
H5	C5	C7	H7C1	173.3	61.1
H5	C5	C7	H7C2	63.9	181.5
H5	C5	C7	H7C3	298.6	301.1
H5	C5	C6	H6C1	296.3	58.9
H5	C5	C6	H6C2	186.8	299.0
H5	C5	C6	H6C3	61.5	178.4
H7C1	C7	C5	C6	290.4	299.6
H7C1	C7	C5	H5	173.3	61.1
C5	C7	H7C1	H7C2	241.9	122.4
C5	C7	H7C1	H7C3	123.8	238.4
H7C2	C7	H7C1	H7C3	241.9	116.0
H7C2	C7	C5	C6	180.9	60.1
H7C2	C7	C5	H5	63.9	181.5
C5	C7	H7C2	H7C1	118.1	237.9
C5	C7	H7C2	H7C3	236.2	121.5
H7C1	C7	H7C2	H7C3	118.1	243.6
H7C3	C7	C5	C6	55.6	179.6
H7C3	C7	C5	H5	298.6	301.1
C5	C7	H7C3	H7C1	234.7	121.6
C5	C7	H7C3	H7C2	125.3	238.1
H7C1	C7	H7C3	H7C2	250.5	116.4
H6C1	C6	C5	H5	296.3	58.9
C5	C6	H6C1	H6C2	242.7	238.4
C5	C6	H6C1	H6C3	125.5	121.8
H6C2	C6	H6C1	H6C3	242.8	243.5
H6C2	C6	C5	H5	186.8	299.0
C5	C6	H6C2	H6C1	117.3	121.5
C5	C6	H6C2	H6C3	234.5	237.6
H6C1	C6	H6C2	H6C3	117.3	116.1
H6C3	C6	C5	H5	61.5	178.4
C5	C6	H6C3	H6C1	234.7	238.6
C5	C6	H6C3	H6C2	125.3	122.1
H6C1	C6	H6C3	H6C2	250.5	243.5