PDB Chemical Component SVW
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SVW
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N |
HN1 |
1.000 |
1.006 |
N |
HN2 |
1.001 |
1.006 |
CA |
HC |
1.100 |
1.095 |
N |
CA |
1.477 |
1.442 |
CA |
C |
1.558 |
1.515 |
C |
O |
1.249 |
1.224 |
CA |
CB |
1.533 |
1.522 |
CB |
OG |
1.428 |
1.422 |
OG |
P1 |
1.564 |
1.623 |
O3 |
P1 |
1.513 |
1.506 |
P1 |
O4 |
1.518 |
1.625 |
P1 |
N2 |
1.745 |
1.653 |
C |
OXT |
1.343 |
1.358 |
CB |
HBC1 |
1.115 |
1.094 |
CB |
HBC2 |
1.115 |
1.097 |
O4 |
H4 |
0.950 |
0.981 |
N2 |
H2N1 |
1.020 |
1.020 |
N2 |
H2N2 |
1.020 |
1.019 |
OXT |
HXT |
4.103 |
0.981 |
Bond Angles for SVW
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
HN1 |
N |
HN2 |
109.4 |
120.7 |
CA |
N |
HN1 |
109.5 |
118.9 |
CA |
N |
HN2 |
109.5 |
119.0 |
N |
CA |
HC |
108.0 |
105.3 |
C |
CA |
HC |
104.9 |
110.0 |
CB |
CA |
HC |
106.3 |
111.8 |
N |
CA |
C |
112.3 |
107.4 |
N |
CA |
CB |
111.0 |
111.6 |
CA |
C |
O |
118.9 |
125.1 |
C |
CA |
CB |
113.8 |
110.5 |
CA |
C |
OXT |
118.6 |
111.9 |
O |
C |
OXT |
122.5 |
122.9 |
CA |
CB |
OG |
111.3 |
109.2 |
CA |
CB |
HBC1 |
111.6 |
111.0 |
CA |
CB |
HBC2 |
111.5 |
111.5 |
CB |
OG |
P1 |
121.8 |
120.1 |
OG |
CB |
HBC1 |
111.5 |
107.9 |
OG |
CB |
HBC2 |
111.6 |
108.7 |
OG |
P1 |
O3 |
92.9 |
111.6 |
OG |
P1 |
O4 |
103.8 |
101.9 |
OG |
P1 |
N2 |
132.9 |
107.8 |
O3 |
P1 |
O4 |
118.8 |
111.5 |
O3 |
P1 |
N2 |
103.8 |
116.4 |
O4 |
P1 |
N2 |
105.7 |
106.5 |
P1 |
O4 |
H4 |
103.8 |
118.7 |
P1 |
N2 |
H2N1 |
104.1 |
117.1 |
P1 |
N2 |
H2N2 |
132.9 |
117.1 |
C |
OXT |
HXT |
27.4 |
115.2 |
HBC1 |
CB |
HBC2 |
98.8 |
108.5 |
H2N1 |
N2 |
H2N2 |
104.1 |
105.7 |
Torsion Angles for SVW
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
CA |
N |
HN1 |
HN2 |
120.0 |
193.7 |
HN1 |
N |
CA |
HC |
160.9 |
176.0 |
HN1 |
N |
CA |
C |
45.7 |
58.7 |
HN1 |
N |
CA |
CB |
277.1 |
297.5 |
CA |
N |
HN2 |
HN1 |
240.0 |
166.3 |
HN2 |
N |
CA |
HC |
280.9 |
9.4 |
HN2 |
N |
CA |
C |
165.7 |
252.2 |
HN2 |
N |
CA |
CB |
37.1 |
130.9 |
HC |
CA |
N |
HN1 |
160.9 |
176.0 |
HC |
CA |
N |
HN2 |
280.9 |
9.4 |
N |
CA |
HC |
C |
240.0 |
244.6 |
N |
CA |
HC |
CB |
119.2 |
121.4 |
HC |
CA |
C |
O |
308.9 |
210.1 |
C |
CA |
HC |
CB |
239.2 |
236.8 |
HC |
CA |
C |
OXT |
129.0 |
32.2 |
HC |
CA |
CB |
OG |
314.6 |
295.9 |
HC |
CA |
CB |
HBC1 |
189.3 |
177.1 |
HC |
CA |
CB |
HBC2 |
79.9 |
56.0 |
HN1 |
N |
CA |
HN2 |
240.0 |
166.6 |
C |
CA |
N |
HC |
244.8 |
242.8 |
CB |
CA |
N |
HC |
116.2 |
121.5 |
N |
CA |
C |
O |
66.0 |
324.2 |
C |
CA |
N |
CB |
128.7 |
121.3 |
N |
CA |
C |
OXT |
246.1 |
146.3 |
N |
CA |
CB |
OG |
197.4 |
178.2 |
N |
CA |
CB |
HBC1 |
72.1 |
59.4 |
N |
CA |
CB |
HBC2 |
322.7 |
298.3 |
C |
CA |
N |
HN1 |
45.7 |
58.7 |
C |
CA |
N |
HN2 |
165.7 |
252.2 |
N |
CA |
C |
HC |
117.0 |
114.1 |
CB |
CA |
C |
HC |
244.2 |
236.1 |
N |
CA |
C |
CB |
232.8 |
238.0 |
O |
C |
CA |
OXT |
179.9 |
177.8 |
C |
CA |
CB |
OG |
69.5 |
58.8 |
C |
CA |
CB |
HBC1 |
304.2 |
300.0 |
C |
CA |
CB |
HBC2 |
194.8 |
178.9 |
CA |
C |
OXT |
HXT |
52.7 |
177.8 |
O |
C |
CA |
HC |
308.9 |
210.1 |
O |
C |
CA |
CB |
193.2 |
86.2 |
CA |
C |
O |
OXT |
180.1 |
182.4 |
O |
C |
OXT |
HXT |
232.8 |
359.9 |
CB |
CA |
N |
HN1 |
277.1 |
297.5 |
CB |
CA |
N |
HN2 |
37.1 |
130.9 |
N |
CA |
CB |
HC |
242.8 |
242.3 |
C |
CA |
CB |
HC |
114.9 |
122.9 |
N |
CA |
CB |
C |
127.9 |
119.4 |
CB |
CA |
C |
O |
193.2 |
86.2 |
CB |
CA |
C |
OXT |
13.3 |
268.3 |
CA |
CB |
OG |
P1 |
217.0 |
180.0 |
OG |
CB |
CA |
HBC1 |
125.3 |
118.8 |
OG |
CB |
CA |
HBC2 |
234.7 |
239.9 |
HBC1 |
CB |
CA |
HBC2 |
109.4 |
121.1 |
OG |
CB |
CA |
HC |
314.6 |
295.9 |
CA |
CB |
OG |
HBC1 |
234.7 |
239.2 |
CA |
CB |
OG |
HBC2 |
125.3 |
121.9 |
CB |
OG |
P1 |
O3 |
156.4 |
171.0 |
CB |
OG |
P1 |
O4 |
35.8 |
51.9 |
CB |
OG |
P1 |
N2 |
268.4 |
300.0 |
HBC1 |
CB |
OG |
HBC2 |
250.6 |
242.6 |
P1 |
OG |
CB |
HBC1 |
342.3 |
300.7 |
P1 |
OG |
CB |
HBC2 |
91.7 |
58.1 |
O3 |
P1 |
OG |
O4 |
120.6 |
119.1 |
O3 |
P1 |
OG |
N2 |
248.0 |
231.0 |
O4 |
P1 |
OG |
N2 |
127.4 |
111.9 |
OG |
P1 |
O4 |
H4 |
180.0 |
112.8 |
OG |
P1 |
N2 |
H2N1 |
54.7 |
169.7 |
OG |
P1 |
N2 |
H2N2 |
180.0 |
296.8 |
OG |
P1 |
O3 |
O4 |
252.6 |
246.8 |
OG |
P1 |
O3 |
N2 |
135.6 |
124.3 |
O4 |
P1 |
O3 |
N2 |
243.1 |
237.5 |
O3 |
P1 |
O4 |
H4 |
78.8 |
353.7 |
O3 |
P1 |
N2 |
H2N1 |
162.3 |
295.9 |
O3 |
P1 |
N2 |
H2N2 |
287.5 |
63.1 |
OG |
P1 |
O4 |
O3 |
101.2 |
119.2 |
OG |
P1 |
O4 |
N2 |
217.2 |
247.1 |
O3 |
P1 |
O4 |
N2 |
116.0 |
127.9 |
O4 |
P1 |
N2 |
H2N1 |
288.0 |
60.9 |
O4 |
P1 |
N2 |
H2N2 |
53.3 |
188.1 |
OG |
P1 |
N2 |
O3 |
252.5 |
233.8 |
OG |
P1 |
N2 |
O4 |
126.7 |
108.8 |
O3 |
P1 |
N2 |
O4 |
234.2 |
235.0 |
N2 |
P1 |
O4 |
H4 |
322.8 |
225.7 |
H2N1 |
N2 |
P1 |
H2N2 |
234.7 |
232.8 |
OXT |
C |
CA |
HC |
129.0 |
32.2 |
CA |
C |
OXT |
O |
179.9 |
177.9 |
OXT |
C |
CA |
CB |
13.3 |
268.3 |
HBC1 |
CB |
CA |
HC |
189.3 |
177.1 |
CA |
CB |
HBC1 |
OG |
125.1 |
119.6 |
CA |
CB |
HBC1 |
HBC2 |
242.6 |
237.1 |
HBC1 |
CB |
OG |
P1 |
342.3 |
300.7 |
OG |
CB |
HBC1 |
HBC2 |
117.4 |
117.5 |
HBC2 |
CB |
CA |
HC |
79.9 |
56.0 |
CA |
CB |
HBC2 |
OG |
234.9 |
239.6 |
CA |
CB |
HBC2 |
HBC1 |
117.5 |
122.6 |
HBC2 |
CB |
OG |
P1 |
91.7 |
58.1 |
OG |
CB |
HBC2 |
HBC1 |
242.6 |
243.0 |
H4 |
O4 |
P1 |
N2 |
322.8 |
225.7 |
P1 |
N2 |
H2N1 |
H2N2 |
141.9 |
132.5 |
P1 |
N2 |
H2N2 |
H2N1 |
234.7 |
227.5 |