PDB Chemical Component SV2
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SV2
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O6 |
C6 |
1.384 |
1.221 |
| N7 |
C8 |
1.354 |
1.302 |
| N7 |
C5 |
1.393 |
1.354 |
| OAD |
PBA |
1.508 |
1.480 |
| OAG |
PBA |
1.570 |
1.610 |
| C8 |
N9 |
1.349 |
1.364 |
| C6 |
C5 |
1.415 |
1.465 |
| C6 |
N1 |
1.334 |
1.342 |
| C5 |
C4 |
1.369 |
1.390 |
| PBA |
OAH |
1.566 |
1.611 |
| PBA |
CAM |
1.827 |
1.823 |
| OAS |
CAM |
1.398 |
1.429 |
| OAS |
CAK |
1.385 |
1.429 |
| N1 |
C2 |
1.345 |
1.316 |
| N9 |
C4 |
1.383 |
1.361 |
| N9 |
CAN |
1.458 |
1.465 |
| C4 |
N3 |
1.376 |
1.371 |
| CAK |
CAX |
1.504 |
1.530 |
| CAN |
CAX |
1.558 |
1.531 |
| C2 |
N3 |
1.347 |
1.359 |
| C2 |
N2 |
1.422 |
1.369 |
| CAX |
CAJ |
1.500 |
1.531 |
| CAJ |
OAR |
1.369 |
1.429 |
| OAR |
CAL |
1.385 |
1.429 |
| CAL |
PAZ |
1.833 |
1.823 |
| OAC |
PAZ |
1.514 |
1.480 |
| PAZ |
OAE |
1.568 |
1.609 |
| PAZ |
OAF |
1.566 |
1.611 |
| OAE |
H1 |
0.950 |
0.967 |
| OAF |
H2 |
0.950 |
0.967 |
| CAL |
H3 |
1.100 |
1.090 |
| CAL |
H4 |
1.100 |
1.090 |
| CAJ |
H5 |
1.100 |
1.090 |
| CAJ |
H6 |
1.100 |
1.090 |
| CAX |
H7 |
1.100 |
1.090 |
| CAK |
H8 |
1.100 |
1.090 |
| CAK |
H9 |
1.100 |
1.089 |
| CAM |
H10 |
1.100 |
1.090 |
| CAM |
H11 |
1.100 |
1.090 |
| OAG |
H12 |
0.950 |
0.967 |
| OAH |
H13 |
0.949 |
0.967 |
| CAN |
H14 |
1.100 |
1.090 |
| CAN |
H15 |
1.099 |
1.090 |
| C8 |
H16 |
1.080 |
1.080 |
| N3 |
H17 |
1.000 |
0.970 |
| N2 |
H18 |
1.000 |
0.970 |
| N2 |
H19 |
1.000 |
0.970 |
Bond Angles for SV2
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N7 |
C8 |
H16 |
126.2 |
125.2 |
| N7 |
C5 |
C4 |
109.0 |
107.4 |
| OAG |
PBA |
OAH |
111.6 |
109.4 |
| C8 |
N9 |
C4 |
110.7 |
107.6 |
| N9 |
C4 |
C5 |
105.0 |
106.4 |
| C5 |
C4 |
N3 |
120.0 |
118.9 |
| PBA |
OAH |
H13 |
109.5 |
114.0 |
| PBA |
CAM |
H10 |
107.6 |
109.5 |
| PBA |
CAM |
H11 |
107.6 |
109.5 |
| OAS |
CAM |
H10 |
107.6 |
109.5 |
| OAS |
CAM |
H11 |
107.6 |
109.5 |
| OAS |
CAK |
H8 |
107.3 |
109.5 |
| OAS |
CAK |
H9 |
107.3 |
109.5 |
| N9 |
C4 |
N3 |
134.9 |
134.7 |
| N9 |
CAN |
H14 |
111.6 |
109.5 |
| N9 |
CAN |
H15 |
111.6 |
109.5 |
| C4 |
N3 |
H17 |
120.2 |
119.8 |
| CAK |
CAX |
H7 |
100.8 |
109.5 |
| CAN |
CAX |
H7 |
100.4 |
109.5 |
| C2 |
N3 |
H17 |
120.2 |
119.7 |
| C2 |
N2 |
H18 |
120.0 |
120.0 |
| C2 |
N2 |
H19 |
120.0 |
120.0 |
| CAX |
CAJ |
H5 |
107.5 |
109.5 |
| CAX |
CAJ |
H6 |
107.5 |
109.4 |
| OAR |
CAL |
H3 |
107.8 |
109.5 |
| OAR |
CAL |
H4 |
107.8 |
109.5 |
| PAZ |
OAE |
H1 |
109.5 |
114.0 |
| PAZ |
OAF |
H2 |
109.5 |
114.0 |
| H3 |
CAL |
H4 |
109.5 |
109.5 |
| H5 |
CAJ |
H6 |
109.5 |
109.5 |
| H8 |
CAK |
H9 |
109.5 |
109.5 |
| H10 |
CAM |
H11 |
109.5 |
109.4 |
| H14 |
CAN |
H15 |
109.5 |
109.5 |
| H18 |
N2 |
H19 |
120.0 |
120.0 |
Torsion Angles for SV2
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N7 |
C8 |
N9 |
C4 |
2.8 |
0.1 |
| C5 |
N7 |
C8 |
H16 |
178.3 |
180.0 |
| N9 |
C4 |
C5 |
N7 |
1.7 |
0.0 |
| N7 |
C5 |
C4 |
N3 |
178.9 |
180.2 |
| OAD |
PBA |
OAH |
H13 |
360.0 |
60.0 |
| OAD |
PBA |
CAM |
H10 |
66.7 |
174.4 |
| OAD |
PBA |
CAM |
H11 |
184.6 |
54.4 |
| OAG |
PBA |
OAH |
H13 |
237.1 |
300.1 |
| OAG |
PBA |
CAM |
H10 |
188.7 |
294.4 |
| OAG |
PBA |
CAM |
H11 |
306.6 |
174.4 |
| C8 |
N9 |
C4 |
C5 |
357.2 |
359.9 |
| C8 |
N9 |
C4 |
N3 |
180.6 |
179.8 |
| C8 |
N9 |
CAN |
H14 |
16.3 |
144.5 |
| C8 |
N9 |
CAN |
H15 |
139.2 |
24.4 |
| N9 |
C4 |
C5 |
N3 |
182.8 |
179.9 |
| C5 |
C4 |
N3 |
H17 |
181.4 |
179.8 |
| OAH |
PBA |
CAM |
H10 |
306.9 |
54.4 |
| OAH |
PBA |
CAM |
H11 |
64.7 |
294.4 |
| OAS |
CAM |
PBA |
H10 |
238.9 |
120.0 |
| OAS |
CAM |
PBA |
H11 |
121.1 |
240.0 |
| H10 |
CAM |
PBA |
H11 |
242.2 |
120.0 |
| PBA |
CAM |
OAS |
H10 |
121.1 |
240.0 |
| PBA |
CAM |
OAS |
H11 |
238.9 |
120.0 |
| CAM |
OAS |
CAK |
H8 |
230.8 |
56.4 |
| CAM |
OAS |
CAK |
H9 |
348.4 |
296.4 |
| H10 |
CAM |
OAS |
H11 |
117.8 |
240.0 |
| OAS |
CAK |
CAX |
H7 |
108.2 |
305.9 |
| H8 |
CAK |
OAS |
H9 |
242.4 |
120.0 |
| N1 |
C2 |
N3 |
H17 |
179.6 |
179.9 |
| N1 |
C2 |
N2 |
H18 |
360.0 |
185.2 |
| N1 |
C2 |
N2 |
H19 |
180.0 |
5.3 |
| N7 |
C5 |
C4 |
N9 |
1.7 |
0.0 |
| C5 |
C4 |
N9 |
N3 |
176.6 |
180.2 |
| C4 |
N9 |
CAN |
H14 |
188.9 |
324.1 |
| C4 |
N9 |
CAN |
H15 |
311.9 |
204.1 |
| N9 |
C4 |
N3 |
H17 |
357.6 |
360.0 |
| N9 |
CAN |
CAX |
H7 |
346.8 |
304.7 |
| H14 |
CAN |
N9 |
H15 |
237.1 |
120.1 |
| N9 |
C4 |
N3 |
C5 |
176.2 |
180.2 |
| C2 |
N3 |
C4 |
H17 |
180.0 |
180.0 |
| CAN |
CAX |
CAK |
H7 |
251.8 |
120.1 |
| CAK |
CAX |
CAJ |
H5 |
272.9 |
305.0 |
| CAK |
CAX |
CAJ |
H6 |
30.7 |
185.0 |
| CAK |
CAX |
CAN |
H7 |
108.5 |
239.9 |
| CAN |
CAX |
CAJ |
H5 |
128.3 |
65.0 |
| CAN |
CAX |
CAJ |
H6 |
246.0 |
305.0 |
| C4 |
N3 |
C2 |
H17 |
180.0 |
180.0 |
| N2 |
C2 |
N3 |
H17 |
359.8 |
360.0 |
| H18 |
N2 |
C2 |
H19 |
180.0 |
180.0 |
| H5 |
CAJ |
CAX |
H6 |
242.3 |
120.0 |
| CAJ |
OAR |
CAL |
H3 |
283.6 |
315.0 |
| CAJ |
OAR |
CAL |
H4 |
41.6 |
195.0 |
| H3 |
CAL |
OAR |
H4 |
242.0 |
120.0 |
| CAL |
PAZ |
OAE |
H1 |
240.4 |
300.0 |
| CAL |
PAZ |
OAF |
H2 |
120.1 |
180.0 |
| OAC |
PAZ |
OAE |
H1 |
0.0 |
180.0 |
| OAC |
PAZ |
OAF |
H2 |
0.0 |
300.0 |
| OAF |
PAZ |
OAE |
H1 |
123.3 |
60.0 |
| OAR |
CAL |
H3 |
H4 |
116.9 |
240.0 |
| OAR |
CAL |
H4 |
H3 |
243.1 |
120.0 |
| CAX |
CAJ |
H5 |
H6 |
116.4 |
240.0 |
| CAX |
CAJ |
H6 |
H5 |
243.6 |
120.0 |
| H7 |
CAX |
CAJ |
H5 |
18.9 |
185.0 |
| H7 |
CAX |
CAJ |
H6 |
136.6 |
65.0 |
| OAS |
CAK |
H8 |
H9 |
116.2 |
240.0 |
| H8 |
CAK |
CAX |
H7 |
347.0 |
65.9 |
| OAS |
CAK |
H9 |
H8 |
243.8 |
120.0 |
| H9 |
CAK |
CAX |
H7 |
229.4 |
185.9 |
| PBA |
CAM |
H10 |
H11 |
116.6 |
240.0 |
| OAS |
CAM |
H10 |
H11 |
243.4 |
120.0 |
| PBA |
CAM |
H11 |
H10 |
243.4 |
120.0 |
| OAS |
CAM |
H11 |
H10 |
116.6 |
240.0 |
| H12 |
OAG |
PBA |
OAH |
122.5 |
304.9 |
| N9 |
CAN |
H14 |
H15 |
124.1 |
239.9 |
| H14 |
CAN |
CAX |
H7 |
228.2 |
64.7 |
| N9 |
CAN |
H15 |
H14 |
235.9 |
120.1 |
| H15 |
CAN |
CAX |
H7 |
105.3 |
184.7 |
| H16 |
C8 |
N9 |
C4 |
182.8 |
180.0 |
| C2 |
N2 |
H18 |
H19 |
180.0 |
180.0 |
| C2 |
N2 |
H19 |
H18 |
180.0 |
180.0 |