PDB Chemical Component SV1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for SV1

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O1	C8	1.208	1.208
C8	C7	1.507	1.507
C8	O2	1.343	1.342
C7	C6	1.509	1.507
C6	C5	1.399	1.380
C6	C1	1.413	1.399
C5	C4	1.382	1.382
C4	C3	1.392	1.391
C3	N	1.371	1.397
C3	C2	1.394	1.385
C2	C1	1.400	1.398
C1	C	1.512	1.472
C	O	1.215	1.213
O2	C9	1.455	1.452
C9	C10	1.512	1.529
C10	C11	1.511	1.508
C11	C16	1.388	1.383
C11	C12	1.388	1.382
C16	C15	1.386	1.382
C15	C14	1.376	1.382
C14	C13	1.377	1.383
C13	C12	1.388	1.382
C	H	1.080	1.080
C7	H71	1.100	1.090
C7	H72	1.100	1.090
C5	H5	1.080	1.080
C4	H4	1.080	1.080
N	HN1	0.999	0.971
N	HN2	1.000	0.970
C2	H2	1.080	1.080
C9	H91C	1.100	1.090
C9	H92C	1.100	1.090
C10	H101	1.100	1.090
C10	H102	1.100	1.089
C16	H16	1.080	1.080
C12	H12	1.080	1.080
C15	H15	1.080	1.080
C14	H14	1.080	1.080
C13	H13	1.080	1.079

Bond Angles for SV1

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1	C8	C7	124.8	120.0
O1	C8	O2	123.9	120.0
C7	C8	O2	111.3	120.0
C8	C7	C6	110.3	109.5
C8	C7	H71	109.3	109.4
C8	C7	H72	109.3	109.5
C8	O2	C9	118.4	117.1
C7	C6	C5	118.3	120.0
C7	C6	C1	123.6	120.0
C6	C7	H71	109.3	109.5
C6	C7	H72	109.2	109.5
C5	C6	C1	118.1	120.0
C6	C5	C4	122.2	120.2
C6	C5	H5	118.9	119.9
C6	C1	C2	118.9	119.7
C6	C1	C	124.2	120.2
C5	C4	C3	120.3	120.3
C4	C5	H5	118.9	119.9
C5	C4	H4	119.8	119.8
C4	C3	N	120.9	120.0
C4	C3	C2	118.1	120.0
C3	C4	H4	119.8	119.9
N	C3	C2	121.0	120.0
C3	N	HN1	109.5	120.0
C3	N	HN2	109.5	120.0
C3	C2	C1	122.4	119.8
C3	C2	H2	118.8	120.1
C2	C1	C	116.9	120.2
C1	C2	H2	118.8	120.1
C1	C	O	124.4	120.0
C1	C	H	117.8	120.0
O	C	H	117.8	120.0
O2	C9	C10	109.2	109.5
O2	C9	H91C	109.5	109.5
O2	C9	H92C	109.5	109.4
C9	C10	C11	114.2	109.5
C10	C9	H91C	109.5	109.5
C10	C9	H92C	109.6	109.5
C9	C10	H101	108.3	109.5
C9	C10	H102	108.3	109.5
C10	C11	C16	120.8	120.0
C10	C11	C12	120.9	120.0
C11	C10	H101	108.3	109.4
C11	C10	H102	108.3	109.4
C16	C11	C12	118.3	120.0
C11	C16	C15	120.8	119.9
C11	C16	H16	119.6	120.0
C11	C12	C13	120.8	120.0
C11	C12	H12	119.6	119.9
C16	C15	C14	120.2	120.1
C15	C16	H16	119.6	120.1
C16	C15	H15	119.9	120.0
C15	C14	C13	119.7	120.0
C14	C15	H15	119.9	119.9
C15	C14	H14	120.2	120.1
C14	C13	C12	120.2	120.0
C13	C14	H14	120.2	120.0
C14	C13	H13	119.9	120.0
C13	C12	H12	119.6	120.0
C12	C13	H13	119.9	120.0
H72	C7	H71	109.5	109.5
HN1	N	HN2	109.5	120.0
H91C	C9	H92C	109.5	109.4
H101	C10	H102	109.5	109.5

Torsion Angles for SV1

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C7	C8	O1	O2	182.1	180.3
O1	C8	C7	C6	75.0	360.0
O1	C8	C7	H71	195.2	239.9
O1	C8	C7	H72	314.9	120.0
O1	C8	O2	C9	354.3	0.0
O1	C8	C7	O2	178.1	179.7
C7	C8	O2	C9	172.5	179.7
C8	C7	C6	C5	27.5	265.0
C8	C7	C6	C1	210.4	84.7
C6	C7	C8	H71	239.9	120.0
C6	C7	C8	H72	120.1	240.0
H72	C7	C8	H71	119.8	240.1
O1	C8	O2	C7	181.9	180.3
O2	C8	C7	C6	256.9	180.3
O2	C8	C7	H71	17.0	60.2
O2	C8	C7	H72	136.8	300.3
C8	O2	C9	C10	272.1	180.0
C8	O2	C9	H91C	32.1	300.1
C8	O2	C9	H92C	152.2	60.0
C6	C7	C8	O2	256.9	180.3
C8	C7	C6	H71	120.1	240.0
C8	C7	C6	H72	239.9	120.0
C5	C6	C7	C1	177.1	180.3
C7	C6	C5	C4	181.9	180.0
C7	C6	C5	H5	1.9	359.9
C7	C6	C1	C2	177.9	179.8
C7	C6	C1	C	359.9	0.0
H72	C7	C6	H71	240.2	120.0
C7	C6	C5	C1	182.8	179.7
C5	C6	C7	H71	267.3	25.0
C5	C6	C7	H72	147.6	145.0
C5	C6	C1	C2	0.8	359.5
C5	C6	C1	C	182.8	179.7
C6	C5	C4	C3	0.8	0.0
C4	C5	C6	H5	180.0	180.0
C6	C5	C4	H4	180.8	179.9
C7	C6	C1	C5	177.1	180.3
C1	C6	C7	H71	90.2	204.7
C1	C6	C7	H72	330.5	324.7
C1	C6	C5	C4	359.1	0.3
C1	C6	C5	H5	179.1	180.2
C3	C2	C1	C6	359.2	0.5
C2	C1	C6	C	178.0	179.7
C6	C1	C2	H2	179.2	180.3
C6	C1	C	O	354.5	180.0
C6	C1	C	H	174.5	360.0
C4	C5	C6	C1	359.1	0.3
C6	C5	C4	H5	180.0	180.0
C5	C4	C3	N	179.7	180.0
C5	C4	C3	C2	359.3	360.0
C3	C4	C5	H4	180.0	180.1
C3	C4	C5	H5	180.8	180.0
C5	C4	C3	H4	180.0	179.9
N	C3	C4	C2	180.4	180.0
C4	C3	N	HN1	180.0	360.0
C4	C3	N	HN2	300.0	180.0
C4	C3	C2	C1	0.7	359.7
C4	C3	C2	H2	180.7	180.0
C4	C3	N	C2	179.6	180.0
N	C3	C4	H4	359.7	0.1
N	C3	C2	C1	180.3	179.7
N	C3	C2	H2	0.3	0.0
HN1	N	C3	HN2	240.0	180.0
C6	C1	C2	C3	359.2	0.5
C4	C3	C2	N	180.4	180.0
C2	C3	C4	H4	179.3	180.1
C2	C3	N	HN1	0.4	180.0
C2	C3	N	HN2	120.4	360.0
C3	C2	C1	C	177.4	180.3
C1	C2	C3	H2	180.0	179.7
C6	C1	C2	C	181.8	180.3
C3	C2	C1	H2	180.0	180.3
C2	C1	C	O	176.5	0.3
C2	C1	C	H	356.4	180.3
C6	C1	C	C2	178.1	179.7
C	C1	C2	H2	357.4	360.0
O	C	C1	H	180.0	180.0
C1	C	O	H	180.0	180.0
O2	C9	C10	C11	185.2	180.0
C10	C9	O2	H91C	240.1	239.9
C10	C9	O2	H92C	119.9	120.0
O2	C9	C10	H101	305.9	300.0
O2	C9	C10	H102	64.5	60.1
H91C	C9	O2	H92C	239.9	240.1
O2	C9	C10	H91C	119.9	120.0
O2	C9	C10	H92C	240.1	240.0
C9	C10	C11	C16	276.4	90.0
C9	C10	C11	C12	96.9	269.8
C11	C10	C9	H101	239.3	240.0
C11	C10	C9	H102	120.7	119.9
H91C	C9	C10	H92C	120.1	120.0
H101	C10	C9	H102	241.4	239.9
C11	C10	C9	H91C	65.3	60.0
C11	C10	C9	H92C	305.1	300.0
C9	C10	C11	H101	120.7	120.0
C9	C10	C11	H102	239.3	240.0
C16	C11	C10	C12	179.4	180.2
C10	C11	C16	C15	180.2	180.1
C10	C11	C16	H16	0.2	360.0
C10	C11	C12	C13	179.6	179.8
C10	C11	C12	H12	359.6	359.9
H101	C10	C11	H102	118.6	120.0
C10	C11	C16	C12	180.5	179.8
C16	C11	C10	H101	155.7	330.0
C16	C11	C10	H102	37.0	210.0
C16	C11	C12	C13	0.1	359.6
C16	C11	C12	H12	180.1	179.7
C11	C16	C15	C14	0.5	360.0
C15	C16	C11	H16	180.0	180.1
C11	C16	C15	H15	180.5	180.0
C10	C11	C12	C16	179.5	180.2
C12	C11	C10	H101	336.2	149.8
C12	C11	C10	H102	217.6	29.8
C12	C11	C16	C15	359.7	0.3
C12	C11	C16	H16	179.6	180.2
C14	C13	C12	C11	360.0	0.4
C13	C12	C11	H12	180.0	179.9
C11	C12	C13	H13	180.0	180.2
C15	C16	C11	C12	359.7	0.3
C11	C16	C15	H16	180.0	179.9
C16	C15	C14	C13	359.6	360.0
C14	C15	C16	H15	180.0	180.0
C16	C15	C14	H14	179.6	180.0
C14	C15	C16	H16	180.5	180.0
C16	C15	C14	H15	180.0	180.0
C15	C14	C13	C12	0.2	359.9
C13	C14	C15	H14	180.0	180.0
C15	C14	C13	H13	180.2	180.0
C11	C12	C13	C14	360.0	0.4
C13	C14	C15	H15	179.6	180.0
C15	C14	C13	H14	180.0	180.0
C14	C13	C12	H12	180.0	180.2
C12	C13	C14	H13	180.0	179.9
C11	C12	C13	H12	180.0	180.1
C12	C13	C14	H14	180.2	179.8
C14	C13	C12	H13	180.0	180.1
C1	C	H	O	180.0	180.0
H71	C7	C8	O2	17.0	60.2
C8	C7	H71	C6	239.3	120.0
C8	C7	H71	H72	119.6	240.1
H71	C7	C6	C5	267.3	25.0
H71	C7	C6	C1	90.2	204.7
C6	C7	H71	H72	240.4	120.0
H72	C7	C8	O2	136.8	300.3
C8	C7	H72	C6	120.7	240.0
C8	C7	H72	H71	240.4	119.9
H72	C7	C6	C5	147.6	145.0
H72	C7	C6	C1	330.5	324.7
C6	C7	H72	H71	119.6	239.9
H5	C5	C6	C1	179.1	180.2
C6	C5	H5	C4	180.0	180.0
H5	C5	C4	C3	180.8	180.0
H5	C5	C4	H4	0.8	360.0
C5	C4	H4	C3	180.0	180.1
H4	C4	C5	H5	0.8	360.0
H4	C4	C3	N	359.7	0.1
H4	C4	C3	C2	179.3	180.1
HN1	N	C3	C2	0.4	180.0
C3	N	HN1	HN2	120.0	180.0
HN2	N	C3	C2	120.4	360.0
C3	N	HN2	HN1	240.0	180.0
C3	C2	H2	C1	180.0	179.7
H2	C2	C1	C	357.4	360.0
O2	C9	H91C	C10	240.3	240.0
O2	C9	H91C	H92C	120.1	119.9
H91C	C9	C10	C11	65.3	60.0
C10	C9	H91C	H92C	239.8	239.9
H91C	C9	C10	H101	186.0	180.0
H91C	C9	C10	H102	304.6	300.0
O2	C9	H92C	C10	119.7	120.0
O2	C9	H92C	H91C	239.9	240.1
H92C	C9	C10	C11	305.1	300.0
C10	C9	H92C	H91C	120.1	120.1
H92C	C9	C10	H101	65.8	60.0
H92C	C9	C10	H102	184.4	180.0
C9	C10	H101	C11	235.7	240.0
H101	C10	C9	H91C	186.0	180.0
H101	C10	C9	H92C	65.8	60.0
C9	C10	H101	H102	117.8	120.1
H101	C10	C11	C16	155.7	330.0
H101	C10	C11	C12	336.2	149.8
C11	C10	H101	H102	242.1	240.1
C9	C10	H102	C11	124.3	120.0
H102	C10	C9	H91C	304.6	300.0
H102	C10	C9	H92C	184.4	180.0
C9	C10	H102	H101	242.1	239.9
H102	C10	C11	C16	37.0	210.0
H102	C10	C11	C12	217.6	29.8
C11	C10	H102	H101	117.9	119.9
H16	C16	C11	C12	179.6	180.2
C11	C16	H16	C15	180.0	180.1
H16	C16	C15	C14	180.5	180.0
H16	C16	C15	H15	0.5	0.0
C11	C12	H12	C13	180.0	179.9
H12	C12	C13	H13	360.0	0.1
C16	C15	H15	C14	180.0	180.0
H15	C15	C16	H16	0.5	0.0
H15	C15	C14	C13	179.6	180.0
H15	C15	C14	H14	359.6	0.0
C15	C14	H14	C13	180.0	180.0
H14	C14	C15	H15	359.6	0.0
H14	C14	C13	C12	180.2	179.8
H14	C14	C13	H13	0.2	360.0
C14	C13	H13	C12	180.0	179.9
H13	C13	C14	H14	0.2	360.0
H13	C13	C12	H12	360.0	0.1