Atom Nomenclature for SUZ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for SUZ

Atom Name (V3) Atom Name (V2)
C20 C20
C19 C19
C5 C5
C6 C6
C7 C7
C18 C18
C17 C17
C16 C16
C15 C15
F F
C14 C14
C13 C13
C10 C10
C11 C11
C12 C12
O3 O3
O2 O2
C8 C8
C9 C9
C4 C4
C3 C3
C2 C2
S S
O1 O1
C1 C1
H20 H20
H19 H19
H6 H6
H17 H17
H16 H16
H14 H14
H11 H11
H11A H11A
H9 H9
H9A H9A
H9B H9B
H4 H4
H3 H3
H1 H1
H1A H1A
H1B H1B
HO2 HO2