PDB Chemical Component SUR
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SUR
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
P |
OP1 |
1.491 |
1.617 |
P |
OP2 |
1.491 |
1.501 |
P |
OP3 |
1.602 |
1.618 |
P |
O5' |
1.596 |
1.619 |
OP1 |
HOP1 |
0.950 |
0.980 |
OP3 |
HOP3 |
0.950 |
0.980 |
O5' |
C5' |
1.426 |
1.416 |
C5' |
C4' |
1.515 |
1.523 |
C5' |
H5'1 |
1.115 |
1.092 |
C5' |
H5'2 |
1.115 |
1.091 |
C4' |
O4' |
1.457 |
1.444 |
C4' |
C3' |
1.530 |
1.523 |
C4' |
H4' |
1.115 |
1.095 |
O4' |
C1' |
1.416 |
1.437 |
C3' |
C2' |
1.526 |
1.514 |
C3' |
O3' |
1.426 |
1.427 |
C3' |
H3' |
1.115 |
1.093 |
C1' |
N1 |
1.470 |
1.435 |
C1' |
C2' |
1.528 |
1.519 |
C1' |
H1' |
1.116 |
1.094 |
N1 |
C6 |
1.387 |
1.401 |
N1 |
C2 |
1.371 |
1.423 |
C2' |
O2' |
1.414 |
1.413 |
C2' |
H2' |
1.115 |
1.097 |
C6 |
C5 |
1.342 |
1.334 |
C6 |
HC6 |
1.102 |
1.086 |
C2 |
S2 |
1.682 |
1.682 |
C2 |
N3 |
1.363 |
1.397 |
C5 |
C4 |
1.440 |
1.475 |
C5 |
HC5 |
1.103 |
1.084 |
N3 |
C4 |
1.391 |
1.385 |
N3 |
HN3 |
1.021 |
1.016 |
C4 |
O4 |
1.234 |
1.227 |
O2' |
HO2 |
0.950 |
0.973 |
O3' |
HO3 |
0.950 |
0.969 |
Bond Angles for SUR
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
OP1 |
P |
OP2 |
119.6 |
115.3 |
OP1 |
P |
OP3 |
107.6 |
103.3 |
OP1 |
P |
O5' |
109.0 |
103.8 |
P |
OP1 |
HOP1 |
119.5 |
119.0 |
OP2 |
P |
OP3 |
107.5 |
114.9 |
OP2 |
P |
O5' |
108.5 |
115.0 |
OP3 |
P |
O5' |
103.4 |
102.9 |
P |
OP3 |
HOP3 |
109.5 |
119.0 |
P |
O5' |
C5' |
119.8 |
118.5 |
O5' |
C5' |
C4' |
111.3 |
108.6 |
O5' |
C5' |
H5'1 |
111.6 |
109.2 |
O5' |
C5' |
H5'2 |
111.6 |
109.3 |
C4' |
C5' |
H5'1 |
111.5 |
110.1 |
C4' |
C5' |
H5'2 |
111.5 |
110.1 |
C5' |
C4' |
O4' |
107.7 |
108.2 |
C5' |
C4' |
C3' |
116.9 |
113.3 |
C5' |
C4' |
H4' |
104.4 |
109.3 |
H5'1 |
C5' |
H5'2 |
98.8 |
109.6 |
O4' |
C4' |
C3' |
105.4 |
105.9 |
O4' |
C4' |
H4' |
116.1 |
107.7 |
C4' |
O4' |
C1' |
109.6 |
109.2 |
C3' |
C4' |
H4' |
106.8 |
112.2 |
C4' |
C3' |
C2' |
102.2 |
102.1 |
C4' |
C3' |
O3' |
106.8 |
107.9 |
C4' |
C3' |
H3' |
115.4 |
114.5 |
O4' |
C1' |
N1 |
108.4 |
109.0 |
O4' |
C1' |
C2' |
106.1 |
106.5 |
O4' |
C1' |
H1' |
115.8 |
108.9 |
C2' |
C3' |
O3' |
108.5 |
110.3 |
C2' |
C3' |
H3' |
113.8 |
114.0 |
C3' |
C2' |
C1' |
100.4 |
102.0 |
C3' |
C2' |
O2' |
113.1 |
112.3 |
C3' |
C2' |
H2' |
113.6 |
110.1 |
O3' |
C3' |
H3' |
109.7 |
107.8 |
C3' |
O3' |
HO3 |
106.9 |
106.4 |
N1 |
C1' |
C2' |
117.9 |
112.5 |
N1 |
C1' |
H1' |
103.4 |
107.3 |
C1' |
N1 |
C6 |
122.8 |
116.8 |
C1' |
N1 |
C2 |
116.6 |
125.1 |
C2' |
C1' |
H1' |
105.8 |
112.6 |
C1' |
C2' |
O2' |
110.9 |
112.6 |
C1' |
C2' |
H2' |
115.7 |
111.1 |
C6 |
N1 |
C2 |
120.6 |
118.1 |
N1 |
C6 |
C5 |
122.5 |
125.1 |
N1 |
C6 |
HC6 |
120.5 |
114.9 |
N1 |
C2 |
S2 |
122.9 |
125.9 |
N1 |
C2 |
N3 |
116.3 |
116.2 |
O2' |
C2' |
H2' |
103.5 |
108.6 |
C2' |
O2' |
HO2 |
113.2 |
107.1 |
C5 |
C6 |
HC6 |
117.0 |
120.0 |
C6 |
C5 |
C4 |
119.6 |
119.3 |
C6 |
C5 |
HC5 |
116.7 |
121.9 |
S2 |
C2 |
N3 |
120.7 |
117.9 |
C2 |
N3 |
C4 |
126.5 |
126.9 |
C2 |
N3 |
HN3 |
115.6 |
116.5 |
C4 |
C5 |
HC5 |
123.6 |
118.8 |
C5 |
C4 |
N3 |
114.4 |
114.5 |
C5 |
C4 |
O4 |
126.4 |
120.9 |
C4 |
N3 |
HN3 |
117.9 |
116.6 |
N3 |
C4 |
O4 |
119.1 |
124.6 |
Torsion Angles for SUR
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
OP2 |
P |
OP1 |
OP3 |
237.1 |
126.2 |
OP2 |
P |
OP1 |
O5' |
125.6 |
233.4 |
OP3 |
P |
OP1 |
O5' |
248.5 |
107.1 |
OP1 |
P |
OP3 |
HOP3 |
163.0 |
78.5 |
OP1 |
P |
O5' |
C5' |
204.6 |
53.2 |
OP1 |
P |
OP2 |
OP3 |
122.9 |
240.0 |
OP1 |
P |
OP2 |
O5' |
234.1 |
120.7 |
OP2 |
P |
OP1 |
HOP1 |
180.0 |
48.7 |
OP3 |
P |
OP2 |
O5' |
111.2 |
240.7 |
OP2 |
P |
OP3 |
HOP3 |
293.0 |
312.0 |
OP2 |
P |
O5' |
C5' |
72.8 |
180.1 |
OP1 |
P |
OP3 |
OP2 |
230.0 |
126.5 |
OP1 |
P |
OP3 |
O5' |
115.3 |
252.3 |
OP3 |
P |
OP1 |
HOP1 |
302.9 |
282.5 |
OP2 |
P |
OP3 |
O5' |
245.3 |
125.8 |
OP3 |
P |
O5' |
C5' |
318.8 |
305.8 |
OP1 |
P |
O5' |
OP2 |
131.8 |
233.1 |
OP1 |
P |
O5' |
OP3 |
245.7 |
107.4 |
O5' |
P |
OP1 |
HOP1 |
54.4 |
175.4 |
OP2 |
P |
O5' |
OP3 |
114.0 |
234.2 |
O5' |
P |
OP3 |
HOP3 |
47.7 |
186.2 |
P |
O5' |
C5' |
C4' |
182.5 |
180.0 |
P |
O5' |
C5' |
H5'1 |
307.8 |
300.1 |
P |
O5' |
C5' |
H5'2 |
57.3 |
59.9 |
HOP1 |
OP1 |
P |
OP2 |
180.0 |
48.7 |
HOP1 |
OP1 |
P |
OP3 |
302.9 |
282.5 |
HOP1 |
OP1 |
P |
O5' |
54.4 |
175.4 |
HOP3 |
OP3 |
P |
O5' |
47.7 |
186.2 |
C4' |
C5' |
O5' |
H5'1 |
234.7 |
239.9 |
C4' |
C5' |
O5' |
H5'2 |
125.2 |
120.1 |
O5' |
C5' |
C4' |
O4' |
179.3 |
62.4 |
O5' |
C5' |
C4' |
C3' |
297.7 |
179.5 |
O5' |
C5' |
C4' |
H4' |
55.4 |
305.4 |
H5'1 |
C5' |
O5' |
H5'2 |
250.5 |
240.2 |
O5' |
C5' |
C4' |
H5'1 |
125.3 |
119.5 |
O5' |
C5' |
C4' |
H5'2 |
234.7 |
240.4 |
H5'1 |
C5' |
C4' |
H5'2 |
109.4 |
120.9 |
O4' |
C4' |
C5' |
C3' |
241.6 |
242.9 |
O4' |
C4' |
C5' |
H4' |
124.0 |
117.0 |
C5' |
C4' |
O4' |
C1' |
119.4 |
109.0 |
C3' |
C4' |
C5' |
H4' |
242.3 |
234.1 |
C5' |
C4' |
C3' |
C2' |
269.2 |
273.1 |
C5' |
C4' |
C3' |
O3' |
155.3 |
156.8 |
C5' |
C4' |
C3' |
H3' |
33.2 |
36.8 |
O5' |
C5' |
H5'1 |
C4' |
234.8 |
240.8 |
O5' |
C5' |
H5'1 |
H5'2 |
117.5 |
119.6 |
C4' |
C5' |
H5'1 |
H5'2 |
242.7 |
238.8 |
H5'1 |
C5' |
C4' |
O4' |
54.0 |
302.9 |
H5'1 |
C5' |
C4' |
C3' |
172.3 |
60.0 |
H5'1 |
C5' |
C4' |
H4' |
290.0 |
185.9 |
O5' |
C5' |
H5'2 |
C4' |
125.1 |
119.2 |
O5' |
C5' |
H5'2 |
H5'1 |
242.5 |
240.4 |
C4' |
C5' |
H5'2 |
H5'1 |
117.4 |
121.2 |
H5'2 |
C5' |
C4' |
O4' |
304.6 |
182.0 |
H5'2 |
C5' |
C4' |
C3' |
63.0 |
299.1 |
H5'2 |
C5' |
C4' |
H4' |
180.6 |
65.0 |
O4' |
C4' |
C5' |
H5'1 |
54.0 |
302.9 |
O4' |
C4' |
C5' |
H5'2 |
304.6 |
182.0 |
C5' |
C4' |
O4' |
C3' |
125.5 |
121.7 |
C5' |
C4' |
O4' |
H4' |
243.4 |
241.9 |
C3' |
C4' |
O4' |
H4' |
117.9 |
120.2 |
O4' |
C4' |
C3' |
C2' |
28.8 |
31.5 |
O4' |
C4' |
C3' |
O3' |
275.0 |
275.3 |
O4' |
C4' |
C3' |
H3' |
152.8 |
155.2 |
C4' |
O4' |
C1' |
N1 |
213.1 |
227.1 |
C4' |
O4' |
C1' |
C2' |
340.6 |
348.7 |
C4' |
O4' |
C1' |
H1' |
97.6 |
110.3 |
C3' |
C4' |
C5' |
H5'1 |
172.3 |
60.0 |
C3' |
C4' |
C5' |
H5'2 |
63.0 |
299.1 |
C5' |
C4' |
C3' |
O4' |
240.4 |
241.6 |
C5' |
C4' |
C3' |
H4' |
116.4 |
124.4 |
O4' |
C4' |
C3' |
H4' |
236.0 |
242.8 |
C3' |
C4' |
O4' |
C1' |
353.9 |
347.2 |
C2' |
C3' |
C4' |
O3' |
113.9 |
116.3 |
C2' |
C3' |
C4' |
H3' |
236.0 |
236.3 |
C4' |
C3' |
C2' |
C1' |
321.1 |
322.9 |
C4' |
C3' |
C2' |
O2' |
203.0 |
202.0 |
C4' |
C3' |
C2' |
H2' |
85.3 |
80.9 |
O3' |
C3' |
C4' |
H3' |
122.1 |
120.1 |
C4' |
C3' |
O3' |
HO3 |
179.9 |
15.2 |
H4' |
C4' |
C5' |
H5'1 |
290.0 |
185.9 |
H4' |
C4' |
C5' |
H5'2 |
180.6 |
65.0 |
C5' |
C4' |
H4' |
O4' |
118.4 |
117.3 |
C5' |
C4' |
H4' |
C3' |
235.6 |
233.5 |
O4' |
C4' |
H4' |
C3' |
117.1 |
116.2 |
H4' |
C4' |
O4' |
C1' |
236.0 |
227.0 |
H4' |
C4' |
C3' |
C2' |
152.8 |
148.7 |
H4' |
C4' |
C3' |
O3' |
38.9 |
32.5 |
H4' |
C4' |
C3' |
H3' |
276.8 |
272.4 |
C1' |
O4' |
C4' |
C3' |
353.9 |
347.2 |
C1' |
O4' |
C4' |
H4' |
236.0 |
227.0 |
C3' |
C2' |
C1' |
O4' |
36.6 |
30.7 |
N1 |
C1' |
O4' |
C2' |
232.5 |
238.4 |
N1 |
C1' |
O4' |
H1' |
115.5 |
116.8 |
O4' |
C1' |
N1 |
C6 |
87.8 |
32.3 |
O4' |
C1' |
N1 |
C2 |
268.3 |
212.4 |
C2' |
C1' |
O4' |
H1' |
243.0 |
238.4 |
O4' |
C1' |
C2' |
O2' |
156.4 |
151.3 |
O4' |
C1' |
C2' |
H2' |
273.9 |
273.4 |
C2' |
C3' |
C4' |
H4' |
152.8 |
148.7 |
C4' |
C3' |
C2' |
O3' |
247.4 |
245.5 |
C4' |
C3' |
C2' |
H3' |
125.0 |
124.0 |
O4' |
C1' |
C2' |
C3' |
36.6 |
30.7 |
O3' |
C3' |
C2' |
H3' |
237.6 |
238.5 |
C2' |
C3' |
O3' |
HO3 |
70.4 |
264.4 |
N1 |
C1' |
C2' |
C3' |
158.2 |
150.0 |
C3' |
C2' |
C1' |
H1' |
273.1 |
271.5 |
C1' |
C2' |
C3' |
O2' |
118.2 |
120.8 |
C1' |
C2' |
C3' |
H2' |
235.9 |
242.0 |
O2' |
C2' |
C3' |
H2' |
117.7 |
121.1 |
C3' |
C2' |
O2' |
HO2 |
179.9 |
168.8 |
O3' |
C3' |
C4' |
H4' |
38.9 |
32.5 |
C4' |
C3' |
O3' |
C2' |
109.5 |
110.7 |
C4' |
C3' |
O3' |
H3' |
234.3 |
235.8 |
C2' |
C3' |
O3' |
H3' |
124.8 |
125.1 |
O3' |
C3' |
C2' |
C1' |
73.8 |
77.4 |
O3' |
C3' |
C2' |
O2' |
315.6 |
316.5 |
O3' |
C3' |
C2' |
H2' |
197.9 |
195.4 |
H3' |
C3' |
C4' |
H4' |
276.8 |
272.4 |
C4' |
C3' |
H3' |
C2' |
242.3 |
243.0 |
C4' |
C3' |
H3' |
O3' |
120.6 |
120.1 |
C2' |
C3' |
H3' |
O3' |
238.3 |
237.2 |
H3' |
C3' |
C2' |
C1' |
196.1 |
198.9 |
H3' |
C3' |
C2' |
O2' |
77.9 |
78.0 |
H3' |
C3' |
C2' |
H2' |
320.2 |
316.9 |
H3' |
C3' |
O3' |
HO3 |
305.6 |
139.4 |
O4' |
C1' |
N1 |
C2' |
120.4 |
117.9 |
O4' |
C1' |
N1 |
H1' |
236.6 |
242.3 |
C3' |
C2' |
C1' |
N1 |
158.2 |
150.0 |
C2' |
C1' |
N1 |
H1' |
116.2 |
124.4 |
N1 |
C1' |
C2' |
O2' |
278.0 |
270.6 |
N1 |
C1' |
C2' |
H2' |
35.5 |
32.7 |
C6 |
N1 |
C1' |
C2 |
179.5 |
179.9 |
C1' |
N1 |
C6 |
C5 |
180.6 |
180.1 |
C1' |
N1 |
C6 |
HC6 |
0.6 |
0.0 |
C1' |
N1 |
C2 |
S2 |
359.7 |
359.9 |
C1' |
N1 |
C2 |
N3 |
179.5 |
180.0 |
O4' |
C1' |
C2' |
N1 |
238.4 |
240.7 |
O4' |
C1' |
C2' |
H1' |
123.5 |
119.3 |
C1' |
C2' |
C3' |
O3' |
73.8 |
77.4 |
C1' |
C2' |
C3' |
H3' |
196.1 |
198.9 |
C3' |
C2' |
C1' |
O2' |
240.2 |
239.4 |
C3' |
C2' |
C1' |
H2' |
122.7 |
117.3 |
N1 |
C1' |
C2' |
H1' |
245.1 |
238.6 |
C2' |
C1' |
N1 |
C6 |
327.4 |
274.4 |
C2' |
C1' |
N1 |
C2 |
147.9 |
94.5 |
O2' |
C2' |
C1' |
H2' |
242.5 |
237.9 |
C1' |
C2' |
O2' |
HO2 |
68.1 |
54.3 |
O4' |
C1' |
H1' |
N1 |
118.3 |
117.8 |
O4' |
C1' |
H1' |
C2' |
242.8 |
242.1 |
N1 |
C1' |
H1' |
C2' |
124.5 |
124.3 |
H1' |
C1' |
N1 |
C6 |
211.2 |
150.0 |
H1' |
C1' |
N1 |
C2 |
31.7 |
330.1 |
H1' |
C1' |
C2' |
O2' |
32.9 |
32.1 |
H1' |
C1' |
C2' |
H2' |
150.4 |
154.2 |
C6 |
N1 |
C1' |
C2' |
327.4 |
274.4 |
C6 |
N1 |
C1' |
H1' |
211.2 |
150.0 |
C1' |
N1 |
C6 |
C2 |
180.5 |
180.1 |
C6 |
N1 |
C2 |
S2 |
180.2 |
180.1 |
C6 |
N1 |
C2 |
N3 |
360.0 |
0.1 |
C5 |
C6 |
N1 |
HC6 |
180.0 |
180.0 |
N1 |
C6 |
C5 |
C4 |
359.8 |
360.0 |
N1 |
C6 |
C5 |
HC5 |
179.8 |
180.0 |
C2 |
N1 |
C1' |
C2' |
147.9 |
94.5 |
C2 |
N1 |
C1' |
H1' |
31.7 |
330.1 |
C1' |
N1 |
C2 |
C6 |
179.5 |
179.9 |
C2 |
N1 |
C6 |
C5 |
0.1 |
359.9 |
C2 |
N1 |
C6 |
HC6 |
180.1 |
179.9 |
S2 |
C2 |
N1 |
N3 |
180.2 |
180.0 |
N1 |
C2 |
N3 |
C4 |
0.0 |
359.9 |
N1 |
C2 |
N3 |
HN3 |
180.0 |
180.0 |
O2' |
C2' |
C3' |
O3' |
315.6 |
316.5 |
O2' |
C2' |
C3' |
H3' |
77.9 |
78.0 |
C3' |
C2' |
O2' |
C1' |
111.9 |
114.5 |
C3' |
C2' |
O2' |
H2' |
236.6 |
238.0 |
O2' |
C2' |
C1' |
H1' |
32.9 |
32.1 |
C1' |
C2' |
O2' |
H2' |
124.7 |
123.5 |
H2' |
C2' |
C3' |
O3' |
197.9 |
195.4 |
H2' |
C2' |
C3' |
H3' |
320.2 |
316.9 |
C3' |
C2' |
H2' |
C1' |
244.6 |
247.7 |
C3' |
C2' |
H2' |
O2' |
123.1 |
123.3 |
H2' |
C2' |
C1' |
H1' |
150.4 |
154.2 |
C1' |
C2' |
H2' |
O2' |
238.5 |
235.6 |
H2' |
C2' |
O2' |
HO2 |
303.4 |
290.8 |
C5 |
C6 |
N1 |
C2 |
0.1 |
359.9 |
N1 |
C6 |
C5 |
HC6 |
180.0 |
180.0 |
C4 |
C5 |
C6 |
HC5 |
180.0 |
180.0 |
C6 |
C5 |
C4 |
N3 |
0.2 |
0.0 |
C6 |
C5 |
C4 |
O4 |
182.0 |
180.0 |
HC6 |
C6 |
N1 |
C2 |
180.1 |
179.9 |
N1 |
C6 |
HC6 |
C5 |
180.0 |
180.0 |
HC6 |
C6 |
C5 |
C4 |
179.8 |
180.0 |
HC6 |
C6 |
C5 |
HC5 |
359.8 |
0.1 |
N1 |
C2 |
S2 |
N3 |
179.8 |
180.0 |
S2 |
C2 |
N3 |
C4 |
179.9 |
180.0 |
S2 |
C2 |
N3 |
HN3 |
359.9 |
360.0 |
N1 |
C2 |
N3 |
S2 |
180.1 |
180.0 |
C5 |
C4 |
N3 |
C2 |
359.8 |
0.0 |
C4 |
N3 |
C2 |
HN3 |
180.0 |
180.0 |
C2 |
N3 |
C4 |
O4 |
178.2 |
180.0 |
C4 |
C5 |
C6 |
HC6 |
179.8 |
180.0 |
C6 |
C5 |
C4 |
HC5 |
180.0 |
180.0 |
C2 |
N3 |
C4 |
C5 |
359.8 |
0.0 |
C5 |
C4 |
N3 |
HN3 |
179.9 |
180.0 |
N3 |
C4 |
C5 |
O4 |
178.2 |
180.0 |
HC5 |
C5 |
C6 |
HC6 |
359.8 |
0.1 |
C6 |
C5 |
HC5 |
C4 |
180.0 |
180.0 |
HC5 |
C5 |
C4 |
N3 |
180.2 |
180.0 |
HC5 |
C5 |
C4 |
O4 |
2.0 |
360.0 |
C2 |
N3 |
C4 |
HN3 |
180.0 |
180.0 |
N3 |
C4 |
C5 |
HC5 |
180.2 |
180.0 |
C5 |
C4 |
N3 |
O4 |
181.6 |
180.0 |
C2 |
N3 |
HN3 |
C4 |
180.0 |
180.0 |
HN3 |
N3 |
C4 |
O4 |
358.3 |
360.0 |
O4 |
C4 |
C5 |
HC5 |
2.0 |
360.0 |
C5 |
C4 |
O4 |
N3 |
178.2 |
180.0 |
O4 |
C4 |
N3 |
HN3 |
358.3 |
360.0 |
HO2 |
O2' |
C2' |
H2' |
303.4 |
290.8 |
HO3 |
O3' |
C3' |
H3' |
305.6 |
139.4 |