PDB Chemical Component SUR

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for SUR

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.491 1.617
P OP2 1.491 1.501
P OP3 1.602 1.618
P O5' 1.596 1.619
OP1 HOP1 0.950 0.980
OP3 HOP3 0.950 0.980
O5' C5' 1.426 1.416
C5' C4' 1.515 1.523
C5' H5'1 1.115 1.092
C5' H5'2 1.115 1.091
C4' O4' 1.457 1.444
C4' C3' 1.530 1.523
C4' H4' 1.115 1.095
O4' C1' 1.416 1.437
C3' C2' 1.526 1.514
C3' O3' 1.426 1.427
C3' H3' 1.115 1.093
C1' N1 1.470 1.435
C1' C2' 1.528 1.519
C1' H1' 1.116 1.094
N1 C6 1.387 1.401
N1 C2 1.371 1.423
C2' O2' 1.414 1.413
C2' H2' 1.115 1.097
C6 C5 1.342 1.334
C6 HC6 1.102 1.086
C2 S2 1.682 1.682
C2 N3 1.363 1.397
C5 C4 1.440 1.475
C5 HC5 1.103 1.084
N3 C4 1.391 1.385
N3 HN3 1.021 1.016
C4 O4 1.234 1.227
O2' HO2 0.950 0.973
O3' HO3 0.950 0.969

Bond Angles for SUR

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 119.6 115.3
OP1 P OP3 107.6 103.3
OP1 P O5' 109.0 103.8
P OP1 HOP1 119.5 119.0
OP2 P OP3 107.5 114.9
OP2 P O5' 108.5 115.0
OP3 P O5' 103.4 102.9
P OP3 HOP3 109.5 119.0
P O5' C5' 119.8 118.5
O5' C5' C4' 111.3 108.6
O5' C5' H5'1 111.6 109.2
O5' C5' H5'2 111.6 109.3
C4' C5' H5'1 111.5 110.1
C4' C5' H5'2 111.5 110.1
C5' C4' O4' 107.7 108.2
C5' C4' C3' 116.9 113.3
C5' C4' H4' 104.4 109.3
H5'1 C5' H5'2 98.8 109.6
O4' C4' C3' 105.4 105.9
O4' C4' H4' 116.1 107.7
C4' O4' C1' 109.6 109.2
C3' C4' H4' 106.8 112.2
C4' C3' C2' 102.2 102.1
C4' C3' O3' 106.8 107.9
C4' C3' H3' 115.4 114.5
O4' C1' N1 108.4 109.0
O4' C1' C2' 106.1 106.5
O4' C1' H1' 115.8 108.9
C2' C3' O3' 108.5 110.3
C2' C3' H3' 113.8 114.0
C3' C2' C1' 100.4 102.0
C3' C2' O2' 113.1 112.3
C3' C2' H2' 113.6 110.1
O3' C3' H3' 109.7 107.8
C3' O3' HO3 106.9 106.4
N1 C1' C2' 117.9 112.5
N1 C1' H1' 103.4 107.3
C1' N1 C6 122.8 116.8
C1' N1 C2 116.6 125.1
C2' C1' H1' 105.8 112.6
C1' C2' O2' 110.9 112.6
C1' C2' H2' 115.7 111.1
C6 N1 C2 120.6 118.1
N1 C6 C5 122.5 125.1
N1 C6 HC6 120.5 114.9
N1 C2 S2 122.9 125.9
N1 C2 N3 116.3 116.2
O2' C2' H2' 103.5 108.6
C2' O2' HO2 113.2 107.1
C5 C6 HC6 117.0 120.0
C6 C5 C4 119.6 119.3
C6 C5 HC5 116.7 121.9
S2 C2 N3 120.7 117.9
C2 N3 C4 126.5 126.9
C2 N3 HN3 115.6 116.5
C4 C5 HC5 123.6 118.8
C5 C4 N3 114.4 114.5
C5 C4 O4 126.4 120.9
C4 N3 HN3 117.9 116.6
N3 C4 O4 119.1 124.6

Torsion Angles for SUR

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 OP3 237.1 126.2
OP2 P OP1 O5' 125.6 233.4
OP3 P OP1 O5' 248.5 107.1
OP1 P OP3 HOP3 163.0 78.5
OP1 P O5' C5' 204.6 53.2
OP1 P OP2 OP3 122.9 240.0
OP1 P OP2 O5' 234.1 120.7
OP2 P OP1 HOP1 180.0 48.7
OP3 P OP2 O5' 111.2 240.7
OP2 P OP3 HOP3 293.0 312.0
OP2 P O5' C5' 72.8 180.1
OP1 P OP3 OP2 230.0 126.5
OP1 P OP3 O5' 115.3 252.3
OP3 P OP1 HOP1 302.9 282.5
OP2 P OP3 O5' 245.3 125.8
OP3 P O5' C5' 318.8 305.8
OP1 P O5' OP2 131.8 233.1
OP1 P O5' OP3 245.7 107.4
O5' P OP1 HOP1 54.4 175.4
OP2 P O5' OP3 114.0 234.2
O5' P OP3 HOP3 47.7 186.2
P O5' C5' C4' 182.5 180.0
P O5' C5' H5'1 307.8 300.1
P O5' C5' H5'2 57.3 59.9
HOP1 OP1 P OP2 180.0 48.7
HOP1 OP1 P OP3 302.9 282.5
HOP1 OP1 P O5' 54.4 175.4
HOP3 OP3 P O5' 47.7 186.2
C4' C5' O5' H5'1 234.7 239.9
C4' C5' O5' H5'2 125.2 120.1
O5' C5' C4' O4' 179.3 62.4
O5' C5' C4' C3' 297.7 179.5
O5' C5' C4' H4' 55.4 305.4
H5'1 C5' O5' H5'2 250.5 240.2
O5' C5' C4' H5'1 125.3 119.5
O5' C5' C4' H5'2 234.7 240.4
H5'1 C5' C4' H5'2 109.4 120.9
O4' C4' C5' C3' 241.6 242.9
O4' C4' C5' H4' 124.0 117.0
C5' C4' O4' C1' 119.4 109.0
C3' C4' C5' H4' 242.3 234.1
C5' C4' C3' C2' 269.2 273.1
C5' C4' C3' O3' 155.3 156.8
C5' C4' C3' H3' 33.2 36.8
O5' C5' H5'1 C4' 234.8 240.8
O5' C5' H5'1 H5'2 117.5 119.6
C4' C5' H5'1 H5'2 242.7 238.8
H5'1 C5' C4' O4' 54.0 302.9
H5'1 C5' C4' C3' 172.3 60.0
H5'1 C5' C4' H4' 290.0 185.9
O5' C5' H5'2 C4' 125.1 119.2
O5' C5' H5'2 H5'1 242.5 240.4
C4' C5' H5'2 H5'1 117.4 121.2
H5'2 C5' C4' O4' 304.6 182.0
H5'2 C5' C4' C3' 63.0 299.1
H5'2 C5' C4' H4' 180.6 65.0
O4' C4' C5' H5'1 54.0 302.9
O4' C4' C5' H5'2 304.6 182.0
C5' C4' O4' C3' 125.5 121.7
C5' C4' O4' H4' 243.4 241.9
C3' C4' O4' H4' 117.9 120.2
O4' C4' C3' C2' 28.8 31.5
O4' C4' C3' O3' 275.0 275.3
O4' C4' C3' H3' 152.8 155.2
C4' O4' C1' N1 213.1 227.1
C4' O4' C1' C2' 340.6 348.7
C4' O4' C1' H1' 97.6 110.3
C3' C4' C5' H5'1 172.3 60.0
C3' C4' C5' H5'2 63.0 299.1
C5' C4' C3' O4' 240.4 241.6
C5' C4' C3' H4' 116.4 124.4
O4' C4' C3' H4' 236.0 242.8
C3' C4' O4' C1' 353.9 347.2
C2' C3' C4' O3' 113.9 116.3
C2' C3' C4' H3' 236.0 236.3
C4' C3' C2' C1' 321.1 322.9
C4' C3' C2' O2' 203.0 202.0
C4' C3' C2' H2' 85.3 80.9
O3' C3' C4' H3' 122.1 120.1
C4' C3' O3' HO3 179.9 15.2
H4' C4' C5' H5'1 290.0 185.9
H4' C4' C5' H5'2 180.6 65.0
C5' C4' H4' O4' 118.4 117.3
C5' C4' H4' C3' 235.6 233.5
O4' C4' H4' C3' 117.1 116.2
H4' C4' O4' C1' 236.0 227.0
H4' C4' C3' C2' 152.8 148.7
H4' C4' C3' O3' 38.9 32.5
H4' C4' C3' H3' 276.8 272.4
C1' O4' C4' C3' 353.9 347.2
C1' O4' C4' H4' 236.0 227.0
C3' C2' C1' O4' 36.6 30.7
N1 C1' O4' C2' 232.5 238.4
N1 C1' O4' H1' 115.5 116.8
O4' C1' N1 C6 87.8 32.3
O4' C1' N1 C2 268.3 212.4
C2' C1' O4' H1' 243.0 238.4
O4' C1' C2' O2' 156.4 151.3
O4' C1' C2' H2' 273.9 273.4
C2' C3' C4' H4' 152.8 148.7
C4' C3' C2' O3' 247.4 245.5
C4' C3' C2' H3' 125.0 124.0
O4' C1' C2' C3' 36.6 30.7
O3' C3' C2' H3' 237.6 238.5
C2' C3' O3' HO3 70.4 264.4
N1 C1' C2' C3' 158.2 150.0
C3' C2' C1' H1' 273.1 271.5
C1' C2' C3' O2' 118.2 120.8
C1' C2' C3' H2' 235.9 242.0
O2' C2' C3' H2' 117.7 121.1
C3' C2' O2' HO2 179.9 168.8
O3' C3' C4' H4' 38.9 32.5
C4' C3' O3' C2' 109.5 110.7
C4' C3' O3' H3' 234.3 235.8
C2' C3' O3' H3' 124.8 125.1
O3' C3' C2' C1' 73.8 77.4
O3' C3' C2' O2' 315.6 316.5
O3' C3' C2' H2' 197.9 195.4
H3' C3' C4' H4' 276.8 272.4
C4' C3' H3' C2' 242.3 243.0
C4' C3' H3' O3' 120.6 120.1
C2' C3' H3' O3' 238.3 237.2
H3' C3' C2' C1' 196.1 198.9
H3' C3' C2' O2' 77.9 78.0
H3' C3' C2' H2' 320.2 316.9
H3' C3' O3' HO3 305.6 139.4
O4' C1' N1 C2' 120.4 117.9
O4' C1' N1 H1' 236.6 242.3
C3' C2' C1' N1 158.2 150.0
C2' C1' N1 H1' 116.2 124.4
N1 C1' C2' O2' 278.0 270.6
N1 C1' C2' H2' 35.5 32.7
C6 N1 C1' C2 179.5 179.9
C1' N1 C6 C5 180.6 180.1
C1' N1 C6 HC6 0.6 0.0
C1' N1 C2 S2 359.7 359.9
C1' N1 C2 N3 179.5 180.0
O4' C1' C2' N1 238.4 240.7
O4' C1' C2' H1' 123.5 119.3
C1' C2' C3' O3' 73.8 77.4
C1' C2' C3' H3' 196.1 198.9
C3' C2' C1' O2' 240.2 239.4
C3' C2' C1' H2' 122.7 117.3
N1 C1' C2' H1' 245.1 238.6
C2' C1' N1 C6 327.4 274.4
C2' C1' N1 C2 147.9 94.5
O2' C2' C1' H2' 242.5 237.9
C1' C2' O2' HO2 68.1 54.3
O4' C1' H1' N1 118.3 117.8
O4' C1' H1' C2' 242.8 242.1
N1 C1' H1' C2' 124.5 124.3
H1' C1' N1 C6 211.2 150.0
H1' C1' N1 C2 31.7 330.1
H1' C1' C2' O2' 32.9 32.1
H1' C1' C2' H2' 150.4 154.2
C6 N1 C1' C2' 327.4 274.4
C6 N1 C1' H1' 211.2 150.0
C1' N1 C6 C2 180.5 180.1
C6 N1 C2 S2 180.2 180.1
C6 N1 C2 N3 360.0 0.1
C5 C6 N1 HC6 180.0 180.0
N1 C6 C5 C4 359.8 360.0
N1 C6 C5 HC5 179.8 180.0
C2 N1 C1' C2' 147.9 94.5
C2 N1 C1' H1' 31.7 330.1
C1' N1 C2 C6 179.5 179.9
C2 N1 C6 C5 0.1 359.9
C2 N1 C6 HC6 180.1 179.9
S2 C2 N1 N3 180.2 180.0
N1 C2 N3 C4 0.0 359.9
N1 C2 N3 HN3 180.0 180.0
O2' C2' C3' O3' 315.6 316.5
O2' C2' C3' H3' 77.9 78.0
C3' C2' O2' C1' 111.9 114.5
C3' C2' O2' H2' 236.6 238.0
O2' C2' C1' H1' 32.9 32.1
C1' C2' O2' H2' 124.7 123.5
H2' C2' C3' O3' 197.9 195.4
H2' C2' C3' H3' 320.2 316.9
C3' C2' H2' C1' 244.6 247.7
C3' C2' H2' O2' 123.1 123.3
H2' C2' C1' H1' 150.4 154.2
C1' C2' H2' O2' 238.5 235.6
H2' C2' O2' HO2 303.4 290.8
C5 C6 N1 C2 0.1 359.9
N1 C6 C5 HC6 180.0 180.0
C4 C5 C6 HC5 180.0 180.0
C6 C5 C4 N3 0.2 0.0
C6 C5 C4 O4 182.0 180.0
HC6 C6 N1 C2 180.1 179.9
N1 C6 HC6 C5 180.0 180.0
HC6 C6 C5 C4 179.8 180.0
HC6 C6 C5 HC5 359.8 0.1
N1 C2 S2 N3 179.8 180.0
S2 C2 N3 C4 179.9 180.0
S2 C2 N3 HN3 359.9 360.0
N1 C2 N3 S2 180.1 180.0
C5 C4 N3 C2 359.8 0.0
C4 N3 C2 HN3 180.0 180.0
C2 N3 C4 O4 178.2 180.0
C4 C5 C6 HC6 179.8 180.0
C6 C5 C4 HC5 180.0 180.0
C2 N3 C4 C5 359.8 0.0
C5 C4 N3 HN3 179.9 180.0
N3 C4 C5 O4 178.2 180.0
HC5 C5 C6 HC6 359.8 0.1
C6 C5 HC5 C4 180.0 180.0
HC5 C5 C4 N3 180.2 180.0
HC5 C5 C4 O4 2.0 360.0
C2 N3 C4 HN3 180.0 180.0
N3 C4 C5 HC5 180.2 180.0
C5 C4 N3 O4 181.6 180.0
C2 N3 HN3 C4 180.0 180.0
HN3 N3 C4 O4 358.3 360.0
O4 C4 C5 HC5 2.0 360.0
C5 C4 O4 N3 178.2 180.0
O4 C4 N3 HN3 358.3 360.0
HO2 O2' C2' H2' 303.4 290.8
HO3 O3' C3' H3' 305.6 139.4