PDB Chemical Component SUC
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SUC
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O6' |
C6' |
1.361 |
1.428 |
| C6' |
C5' |
1.442 |
1.530 |
| O2' |
C5' |
1.444 |
1.448 |
| O2' |
C2' |
1.457 |
1.438 |
| O1' |
C1' |
1.324 |
1.429 |
| C5' |
C4' |
1.487 |
1.550 |
| O6 |
C6 |
1.401 |
1.429 |
| O5 |
C1 |
1.406 |
1.429 |
| O5 |
C5 |
1.458 |
1.430 |
| C1' |
C2' |
1.489 |
1.530 |
| C1 |
C2 |
1.531 |
1.531 |
| C1 |
O1 |
1.424 |
1.429 |
| C2' |
O1 |
1.438 |
1.429 |
| C2' |
C3' |
1.503 |
1.540 |
| C6 |
C5 |
1.483 |
1.530 |
| C2 |
O2 |
1.401 |
1.428 |
| C2 |
C3 |
1.462 |
1.531 |
| C4' |
C3' |
1.499 |
1.548 |
| C4' |
O4' |
1.420 |
1.429 |
| C5 |
C4 |
1.521 |
1.531 |
| C3' |
O3' |
1.406 |
1.429 |
| C4 |
C3 |
1.405 |
1.532 |
| C4 |
O4 |
1.439 |
1.430 |
| C3 |
O3 |
1.499 |
1.429 |
| C1 |
H1 |
1.100 |
1.090 |
| C2 |
H2 |
1.100 |
1.090 |
| C3 |
H3 |
1.100 |
1.090 |
| C4 |
H4 |
1.100 |
1.089 |
| C5 |
H5 |
1.100 |
1.090 |
| C6 |
H61 |
1.100 |
1.090 |
| C6 |
H62 |
1.100 |
1.090 |
| O2 |
HO2 |
0.950 |
0.967 |
| O3 |
HO3 |
0.950 |
0.967 |
| O4 |
HO4 |
0.950 |
0.967 |
| O6 |
HO6 |
0.950 |
0.966 |
| C1' |
H1'1 |
1.101 |
1.090 |
| C1' |
H1'2 |
1.100 |
1.090 |
| C3' |
H3' |
1.100 |
1.089 |
| C4' |
H4' |
1.100 |
1.091 |
| C5' |
H5' |
1.100 |
1.090 |
| C6' |
H6'1 |
1.100 |
1.090 |
| C6' |
H6'2 |
1.100 |
1.090 |
| O1' |
HO1' |
0.950 |
0.967 |
| O3' |
HO3' |
0.950 |
0.967 |
| O4' |
HO4' |
0.950 |
0.967 |
| O6' |
HO6' |
0.950 |
0.968 |
Bond Angles for SUC
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O6' |
C6' |
H6'1 |
109.2 |
109.5 |
| O6' |
C6' |
H6'2 |
109.1 |
109.5 |
| C6' |
C5' |
H5' |
109.7 |
110.6 |
| O2' |
C5' |
H5' |
109.7 |
110.6 |
| O1' |
C1' |
H1'1 |
108.7 |
109.5 |
| O1' |
C1' |
H1'2 |
108.6 |
109.4 |
| C5' |
C4' |
O4' |
110.4 |
110.9 |
| C5' |
C4' |
H4' |
109.8 |
110.9 |
| O6 |
C6 |
H61 |
108.0 |
109.5 |
| O6 |
C6 |
H62 |
108.0 |
109.5 |
| O5 |
C1 |
O1 |
109.6 |
109.5 |
| O5 |
C1 |
H1 |
110.0 |
109.5 |
| O5 |
C5 |
H5 |
109.7 |
109.5 |
| C1' |
C2' |
O1 |
113.7 |
109.9 |
| C1' |
C2' |
C3' |
110.6 |
109.9 |
| C2' |
C1' |
H1'1 |
108.7 |
109.5 |
| C2' |
C1' |
H1'2 |
108.7 |
109.5 |
| C2 |
C1 |
O1 |
108.9 |
109.5 |
| C1 |
C2 |
O2 |
108.5 |
109.6 |
| C1 |
C2 |
C3 |
109.9 |
109.1 |
| C2 |
C1 |
H1 |
108.3 |
109.5 |
| C1 |
C2 |
H2 |
108.6 |
109.5 |
| C1 |
O1 |
C2' |
113.9 |
114.0 |
| O1 |
C1 |
H1 |
109.7 |
109.5 |
| C3' |
C2' |
O1 |
109.0 |
109.9 |
| C2' |
C3' |
O3' |
110.2 |
110.5 |
| C2' |
C3' |
H3' |
109.7 |
110.5 |
| C6 |
C5 |
H5 |
109.3 |
109.5 |
| C3 |
C2 |
O2 |
109.9 |
109.5 |
| O2 |
C2 |
H2 |
110.4 |
109.6 |
| C2 |
O2 |
HO2 |
109.5 |
114.1 |
| C2 |
C3 |
O3 |
110.0 |
109.6 |
| C3 |
C2 |
H2 |
109.5 |
109.5 |
| C2 |
C3 |
H3 |
108.6 |
109.6 |
| C4' |
C3' |
O3' |
114.1 |
110.5 |
| C4' |
C3' |
H3' |
109.8 |
110.6 |
| O4' |
C4' |
H4' |
110.8 |
110.9 |
| C4' |
O4' |
HO4' |
109.5 |
114.0 |
| C5 |
C4 |
O4 |
107.1 |
109.5 |
| C5 |
C4 |
H4 |
107.9 |
109.6 |
| O3' |
C3' |
H3' |
111.2 |
110.5 |
| C3' |
O3' |
HO3' |
109.5 |
114.0 |
| C4 |
C3 |
O3 |
109.0 |
109.5 |
| C4 |
C3 |
H3 |
109.4 |
109.6 |
| O4 |
C4 |
H4 |
109.0 |
109.5 |
| C4 |
O4 |
HO4 |
109.5 |
114.0 |
| O3 |
C3 |
H3 |
108.1 |
109.5 |
| C3 |
O3 |
HO3 |
109.5 |
114.0 |
| H61 |
C6 |
H62 |
109.5 |
109.4 |
| H1'1 |
C1' |
H1'2 |
109.5 |
109.5 |
| H6'1 |
C6' |
H6'2 |
109.5 |
109.4 |
Torsion Angles for SUC
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O6' |
C6' |
C5' |
H5' |
298.9 |
307.9 |
| H6'1 |
C6' |
O6' |
H6'2 |
240.4 |
120.0 |
| O2' |
C5' |
C6' |
H5' |
118.0 |
122.9 |
| C6' |
C5' |
C4' |
O4' |
96.4 |
86.1 |
| C6' |
C5' |
C4' |
H4' |
334.0 |
322.5 |
| C6' |
C5' |
O2' |
H5' |
241.9 |
237.1 |
| O2' |
C5' |
C4' |
H4' |
91.2 |
81.1 |
| O2' |
C2' |
C1' |
H1'1 |
186.7 |
173.2 |
| O2' |
C2' |
C1' |
H1'2 |
67.6 |
293.3 |
| O2' |
C2' |
C3' |
H3' |
77.6 |
120.9 |
| O1' |
C1' |
C2' |
O1 |
183.4 |
292.3 |
| C2' |
C1' |
O1' |
H1'1 |
239.5 |
120.0 |
| C2' |
C1' |
O1' |
H1'2 |
120.5 |
240.0 |
| H1'1 |
C1' |
O1' |
H1'2 |
241.0 |
120.0 |
| C5' |
C4' |
C3' |
O3' |
157.0 |
139.5 |
| C5' |
C4' |
C3' |
H3' |
282.6 |
262.1 |
| O4' |
C4' |
C5' |
H4' |
122.4 |
123.6 |
| C5' |
C4' |
O4' |
HO4' |
180.0 |
292.7 |
| O6 |
C6 |
C5 |
H5 |
177.4 |
305.0 |
| H61 |
C6 |
O6 |
H62 |
241.7 |
120.0 |
| C2 |
C1 |
O5 |
O1 |
240.1 |
240.0 |
| C2 |
C1 |
O5 |
H1 |
119.4 |
120.0 |
| O5 |
C1 |
C2 |
H2 |
296.8 |
297.7 |
| O5 |
C1 |
O1 |
C2' |
103.3 |
69.0 |
| O1 |
C1 |
O5 |
H1 |
239.3 |
240.0 |
| C5 |
O5 |
C1 |
O1 |
63.9 |
58.9 |
| C5 |
O5 |
C1 |
H1 |
184.6 |
178.9 |
| C6 |
C5 |
O5 |
H5 |
240.9 |
240.0 |
| O5 |
C5 |
C4 |
H4 |
66.5 |
62.3 |
| O1' |
C1' |
C2' |
H1'1 |
120.5 |
240.0 |
| O1' |
C1' |
C2' |
H1'2 |
239.5 |
119.9 |
| C1 |
O1 |
C2' |
C1' |
69.5 |
55.2 |
| C3' |
C2' |
C1' |
O1 |
236.9 |
239.0 |
| C1' |
C2' |
C3' |
O3' |
85.9 |
123.9 |
| C1' |
C2' |
C3' |
H3' |
323.2 |
1.4 |
| H1'1 |
C1' |
C2' |
H1'2 |
119.1 |
239.9 |
| O5 |
C1 |
C2 |
O1 |
120.3 |
120.0 |
| O5 |
C1 |
C2 |
H1 |
239.5 |
240.0 |
| C2 |
C1 |
O1 |
C2' |
224.1 |
189.0 |
| O1 |
C1 |
C2 |
H1 |
119.3 |
120.0 |
| C3 |
C2 |
C1 |
O2 |
239.8 |
240.1 |
| O2 |
C2 |
C1 |
H2 |
240.0 |
239.8 |
| C1 |
C2 |
O2 |
HO2 |
180.0 |
60.0 |
| C1 |
C2 |
C3 |
O3 |
181.5 |
183.2 |
| C3 |
C2 |
C1 |
H2 |
119.8 |
119.9 |
| C1 |
C2 |
C3 |
H3 |
63.4 |
63.0 |
| O5 |
C1 |
O1 |
H1 |
120.9 |
120.0 |
| C1' |
C2' |
O1 |
C1 |
69.5 |
55.2 |
| O1 |
C1 |
C2 |
O2 |
56.5 |
57.5 |
| O1 |
C1 |
C2 |
C3 |
296.3 |
297.6 |
| C2 |
C1 |
O1 |
H1 |
241.6 |
240.0 |
| O1 |
C1 |
C2 |
H2 |
176.5 |
177.7 |
| C3' |
C2' |
O1 |
C1 |
193.4 |
176.2 |
| C1' |
C2' |
O1 |
C3' |
236.0 |
239.0 |
| O1 |
C2' |
C1' |
H1'1 |
63.0 |
52.3 |
| O1 |
C2' |
C1' |
H1'2 |
303.9 |
172.4 |
| C2' |
O1 |
C1 |
H1 |
342.5 |
309.0 |
| O1 |
C2' |
C3' |
O3' |
320.1 |
3.0 |
| O1 |
C2' |
C3' |
H3' |
197.4 |
240.4 |
| C1' |
C2' |
C3' |
O1 |
125.8 |
121.0 |
| C3' |
C2' |
C1' |
H1'1 |
299.9 |
291.3 |
| C3' |
C2' |
C1' |
H1'2 |
180.8 |
51.3 |
| C1 |
O1 |
C2' |
C3' |
193.4 |
176.2 |
| C4' |
C3' |
C2' |
O3' |
121.2 |
118.7 |
| C4' |
C3' |
C2' |
H3' |
244.0 |
241.2 |
| O3' |
C3' |
C2' |
H3' |
122.8 |
122.6 |
| C2' |
C3' |
O3' |
HO3' |
180.0 |
180.0 |
| O5 |
C5 |
C6 |
H5 |
119.3 |
120.0 |
| C6 |
C5 |
C4 |
O4 |
64.1 |
62.5 |
| C6 |
C5 |
C4 |
H4 |
307.0 |
302.3 |
| O2 |
C2 |
C1 |
O1 |
56.5 |
57.5 |
| C1 |
C2 |
O2 |
C3 |
239.8 |
240.3 |
| O2 |
C2 |
C1 |
H1 |
297.2 |
297.5 |
| C1 |
C2 |
O2 |
H2 |
118.9 |
120.2 |
| O2 |
C2 |
C3 |
O3 |
62.2 |
63.3 |
| C3 |
C2 |
O2 |
H2 |
239.1 |
239.8 |
| O2 |
C2 |
C3 |
H3 |
304.0 |
303.1 |
| C3 |
C2 |
C1 |
O1 |
296.3 |
297.6 |
| C1 |
C2 |
C3 |
O2 |
119.3 |
119.9 |
| C3 |
C2 |
C1 |
H1 |
177.1 |
177.6 |
| C1 |
C2 |
C3 |
H2 |
240.8 |
240.1 |
| O2 |
C2 |
C3 |
H2 |
121.5 |
120.2 |
| C3 |
C2 |
O2 |
HO2 |
300.2 |
179.6 |
| C4 |
C3 |
C2 |
O3 |
121.1 |
119.8 |
| C4 |
C3 |
C2 |
H3 |
239.3 |
240.0 |
| O3 |
C3 |
C2 |
H3 |
118.1 |
120.2 |
| C2 |
C3 |
O3 |
HO3 |
180.0 |
300.0 |
| C4' |
C3' |
C2' |
O1 |
81.3 |
121.6 |
| C2' |
C3' |
C4' |
O3' |
241.6 |
241.3 |
| C2' |
C3' |
C4' |
H3' |
116.0 |
118.7 |
| O3' |
C3' |
C4' |
H3' |
234.4 |
237.4 |
| C4' |
C3' |
O3' |
HO3' |
66.8 |
65.2 |
| C5' |
C4' |
O4' |
H4' |
238.2 |
236.4 |
| O4' |
C4' |
C3' |
O3' |
276.1 |
257.8 |
| O4' |
C4' |
C3' |
H3' |
41.7 |
20.4 |
| C5 |
C4 |
C3 |
O3 |
177.8 |
176.9 |
| C5 |
C4 |
C3 |
H3 |
295.8 |
297.1 |
| O4 |
C4 |
C5 |
H4 |
117.2 |
120.2 |
| C5 |
C4 |
O4 |
HO4 |
180.0 |
179.6 |
| O3' |
C3' |
C2' |
O1 |
320.1 |
3.0 |
| C2' |
C3' |
O3' |
H3' |
238.1 |
237.4 |
| C4' |
C3' |
O3' |
H3' |
124.9 |
122.7 |
| C4 |
C3 |
C2 |
O2 |
183.3 |
183.1 |
| C2 |
C3 |
C4 |
O3 |
238.3 |
240.1 |
| C4 |
C3 |
C2 |
H2 |
61.8 |
62.9 |
| C2 |
C3 |
C4 |
H3 |
120.3 |
119.9 |
| O3 |
C3 |
C4 |
H3 |
242.0 |
239.8 |
| C4 |
C3 |
O3 |
HO3 |
57.2 |
180.5 |
| C5 |
C4 |
O4 |
H4 |
243.5 |
239.8 |
| O4 |
C4 |
C3 |
O3 |
297.7 |
296.8 |
| O4 |
C4 |
C3 |
H3 |
55.7 |
57.0 |
| O3 |
C3 |
C2 |
O2 |
62.2 |
63.3 |
| O3 |
C3 |
C2 |
H2 |
300.7 |
303.1 |
| C2 |
C3 |
O3 |
H3 |
241.6 |
239.8 |
| C4 |
C3 |
O3 |
H3 |
118.8 |
120.2 |
| O5 |
C1 |
H1 |
O1 |
239.4 |
240.0 |
| C2 |
C1 |
H1 |
O1 |
118.7 |
120.0 |
| H1 |
C1 |
C2 |
O2 |
297.2 |
297.5 |
| H1 |
C1 |
C2 |
C3 |
177.1 |
177.6 |
| H1 |
C1 |
C2 |
H2 |
57.3 |
57.7 |
| H1 |
C1 |
O1 |
C2' |
342.5 |
309.0 |
| H2 |
C2 |
C1 |
O1 |
176.5 |
177.7 |
| C1 |
C2 |
H2 |
O2 |
241.2 |
239.8 |
| C1 |
C2 |
H2 |
C3 |
120.0 |
119.6 |
| H2 |
C2 |
C1 |
H1 |
57.3 |
57.7 |
| C3 |
C2 |
H2 |
O2 |
121.1 |
120.2 |
| H2 |
C2 |
O2 |
HO2 |
61.1 |
299.8 |
| H2 |
C2 |
C3 |
O3 |
300.7 |
303.1 |
| H2 |
C2 |
C3 |
H3 |
182.6 |
182.9 |
| H3 |
C3 |
C2 |
O2 |
304.0 |
303.1 |
| C2 |
C3 |
H3 |
O3 |
119.3 |
120.2 |
| H3 |
C3 |
C2 |
H2 |
182.6 |
182.9 |
| C4 |
C3 |
H3 |
O3 |
241.5 |
239.8 |
| H3 |
C3 |
O3 |
HO3 |
298.4 |
60.3 |
| C5 |
C4 |
H4 |
O4 |
116.0 |
120.2 |
| H4 |
C4 |
C3 |
O3 |
58.7 |
56.9 |
| H4 |
C4 |
C3 |
H3 |
176.7 |
177.1 |
| H4 |
C4 |
O4 |
HO4 |
296.5 |
299.9 |
| H5 |
C5 |
C4 |
O4 |
304.4 |
302.4 |
| H5 |
C5 |
C4 |
H4 |
187.3 |
182.3 |
| O6 |
C6 |
H61 |
H62 |
117.4 |
240.0 |
| H61 |
C6 |
C5 |
H5 |
56.5 |
65.1 |
| O6 |
C6 |
H62 |
H61 |
242.6 |
120.0 |
| H62 |
C6 |
C5 |
H5 |
298.2 |
185.0 |
| HO2 |
O2 |
C2 |
H2 |
61.1 |
299.8 |
| HO3 |
O3 |
C3 |
H3 |
298.4 |
60.3 |
| HO4 |
O4 |
C4 |
H4 |
296.5 |
299.9 |
| HO6 |
O6 |
C6 |
H61 |
300.8 |
60.0 |
| HO6 |
O6 |
C6 |
H62 |
59.1 |
300.0 |
| O1' |
C1' |
H1'1 |
H1'2 |
118.5 |
240.0 |
| H1'1 |
C1' |
C2' |
O1 |
63.0 |
52.3 |
| H1'1 |
C1' |
C2' |
C3' |
299.9 |
291.3 |
| C2' |
C1' |
H1'1 |
H1'2 |
241.5 |
120.0 |
| O1' |
C1' |
H1'2 |
H1'1 |
241.5 |
120.0 |
| H1'2 |
C1' |
C2' |
O1 |
303.9 |
172.4 |
| H1'2 |
C1' |
C2' |
C3' |
180.8 |
51.3 |
| C2' |
C1' |
H1'2 |
H1'1 |
118.5 |
240.0 |
| H3' |
C3' |
C2' |
O1 |
197.4 |
240.4 |
| C2' |
C3' |
H3' |
O3' |
122.2 |
122.6 |
| C4' |
C3' |
H3' |
O3' |
232.7 |
237.4 |
| H3' |
C3' |
O3' |
HO3' |
301.9 |
302.5 |
| C5' |
C4' |
H4' |
O4' |
122.2 |
123.6 |
| H4' |
C4' |
C3' |
O3' |
40.2 |
21.4 |
| H4' |
C4' |
C3' |
H3' |
165.8 |
144.0 |
| H4' |
C4' |
O4' |
HO4' |
301.8 |
56.4 |
| H5' |
C5' |
C4' |
O4' |
332.4 |
323.2 |
| H5' |
C5' |
C4' |
H4' |
210.0 |
199.6 |
| O6' |
C6' |
H6'1 |
H6'2 |
119.4 |
240.0 |
| H6'1 |
C6' |
C5' |
H5' |
178.7 |
68.0 |
| O6' |
C6' |
H6'2 |
H6'1 |
240.6 |
120.0 |
| H6'2 |
C6' |
C5' |
H5' |
59.0 |
187.9 |
| HO1' |
O1' |
C1' |
H1'1 |
300.5 |
60.0 |
| HO1' |
O1' |
C1' |
H1'2 |
59.5 |
299.9 |
| HO3' |
O3' |
C3' |
H3' |
301.9 |
302.5 |
| HO4' |
O4' |
C4' |
H4' |
301.8 |
56.4 |
| HO6' |
O6' |
C6' |
H6'1 |
300.2 |
60.0 |
| HO6' |
O6' |
C6' |
H6'2 |
59.8 |
300.0 |