PDB Chemical Component SU9
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SU9
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N5' |
C4' |
1.433 |
1.346 |
| N5' |
C1' |
1.459 |
1.382 |
| N5' |
H5' |
1.020 |
0.970 |
| C4' |
N3' |
1.533 |
1.309 |
| C4' |
H4' |
1.103 |
1.079 |
| N3' |
C2' |
1.538 |
1.332 |
| C2' |
C1' |
1.525 |
1.384 |
| C2' |
H2' |
1.103 |
1.079 |
| C1' |
C6' |
1.153 |
1.411 |
| C6' |
C9 |
1.433 |
1.380 |
| C6' |
H6' |
1.103 |
1.081 |
| C9 |
C8 |
1.436 |
1.469 |
| C9 |
C4 |
1.425 |
1.480 |
| C8 |
O10 |
1.208 |
1.218 |
| C8 |
N7 |
1.312 |
1.343 |
| N7 |
C5 |
1.388 |
1.391 |
| N7 |
HN7 |
1.020 |
0.970 |
| C5 |
C6 |
1.440 |
1.391 |
| C5 |
C4 |
1.397 |
1.401 |
| C6 |
C1 |
1.415 |
1.380 |
| C6 |
H6 |
1.103 |
1.079 |
| C1 |
C2 |
1.379 |
1.388 |
| C1 |
H1 |
1.103 |
1.080 |
| C2 |
O11 |
1.276 |
1.360 |
| C2 |
C3 |
1.593 |
1.384 |
| O11 |
C12 |
1.226 |
1.429 |
| C12 |
H121 |
1.115 |
1.090 |
| C12 |
H122 |
1.115 |
1.089 |
| C12 |
H123 |
1.115 |
1.089 |
| C3 |
C4 |
1.397 |
1.391 |
| C3 |
H3 |
1.103 |
1.080 |
Bond Angles for SU9
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4' |
N5' |
C1' |
112.6 |
107.2 |
| C4' |
N5' |
H5' |
123.0 |
126.4 |
| N5' |
C4' |
N3' |
107.0 |
109.4 |
| N5' |
C4' |
H4' |
123.9 |
125.4 |
| C1' |
N5' |
H5' |
124.5 |
126.4 |
| N5' |
C1' |
C2' |
106.8 |
106.0 |
| N5' |
C1' |
C6' |
129.4 |
127.0 |
| N3' |
C4' |
H4' |
129.1 |
125.2 |
| C4' |
N3' |
C2' |
106.3 |
109.9 |
| N3' |
C2' |
C1' |
105.9 |
107.5 |
| N3' |
C2' |
H2' |
127.4 |
126.2 |
| C1' |
C2' |
H2' |
126.7 |
126.2 |
| C2' |
C1' |
C6' |
123.0 |
127.0 |
| C1' |
C6' |
C9 |
121.3 |
120.0 |
| C1' |
C6' |
H6' |
108.5 |
120.0 |
| C9 |
C6' |
H6' |
130.2 |
120.0 |
| C6' |
C9 |
C8 |
133.3 |
127.4 |
| C6' |
C9 |
C4 |
124.5 |
127.5 |
| C8 |
C9 |
C4 |
102.1 |
105.1 |
| C9 |
C8 |
O10 |
125.8 |
126.0 |
| C9 |
C8 |
N7 |
114.6 |
108.1 |
| C9 |
C4 |
C5 |
107.3 |
106.4 |
| C9 |
C4 |
C3 |
126.4 |
133.2 |
| O10 |
C8 |
N7 |
119.5 |
126.0 |
| C8 |
N7 |
C5 |
105.2 |
111.3 |
| C8 |
N7 |
HN7 |
125.3 |
124.4 |
| C5 |
N7 |
HN7 |
129.5 |
124.3 |
| N7 |
C5 |
C6 |
129.7 |
131.7 |
| N7 |
C5 |
C4 |
110.7 |
109.2 |
| C6 |
C5 |
C4 |
119.6 |
119.1 |
| C5 |
C6 |
C1 |
119.1 |
120.2 |
| C5 |
C6 |
H6 |
121.3 |
119.9 |
| C5 |
C4 |
C3 |
126.3 |
120.4 |
| C1 |
C6 |
H6 |
119.6 |
119.9 |
| C6 |
C1 |
C2 |
122.6 |
120.6 |
| C6 |
C1 |
H1 |
120.1 |
119.7 |
| C2 |
C1 |
H1 |
117.3 |
119.8 |
| C1 |
C2 |
O11 |
123.0 |
120.0 |
| C1 |
C2 |
C3 |
119.7 |
120.0 |
| O11 |
C2 |
C3 |
117.3 |
120.0 |
| C2 |
O11 |
C12 |
124.8 |
106.8 |
| C2 |
C3 |
C4 |
112.7 |
119.7 |
| C2 |
C3 |
H3 |
129.3 |
120.2 |
| O11 |
C12 |
H121 |
106.8 |
109.4 |
| O11 |
C12 |
H122 |
124.8 |
109.5 |
| O11 |
C12 |
H123 |
106.8 |
109.5 |
| H121 |
C12 |
H122 |
106.8 |
109.4 |
| H121 |
C12 |
H123 |
102.8 |
109.5 |
| H122 |
C12 |
H123 |
106.7 |
109.5 |
| C4 |
C3 |
H3 |
118.0 |
120.1 |
Torsion Angles for SU9
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1' |
N5' |
C4' |
H5' |
180.0 |
180.1 |
| C4' |
N5' |
C1' |
C2' |
7.1 |
0.2 |
| C4' |
N5' |
C1' |
C6' |
177.1 |
180.0 |
| N3' |
C4' |
N5' |
H4' |
180.0 |
180.1 |
| N5' |
C4' |
N3' |
C2' |
352.2 |
359.7 |
| C4' |
N5' |
C1' |
H5' |
180.0 |
179.9 |
| C1' |
N5' |
C4' |
N3' |
0.5 |
0.1 |
| C1' |
N5' |
C4' |
H4' |
180.4 |
180.0 |
| N3' |
C2' |
C1' |
N5' |
348.4 |
359.7 |
| N5' |
C1' |
C2' |
H2' |
168.5 |
180.1 |
| C2' |
C1' |
N5' |
C6' |
190.0 |
180.2 |
| N5' |
C1' |
C6' |
C9 |
11.2 |
323.6 |
| N5' |
C1' |
C6' |
H6' |
191.2 |
143.7 |
| C4' |
N5' |
H5' |
C1' |
180.0 |
180.1 |
| H5' |
N5' |
C4' |
N3' |
180.5 |
180.0 |
| H5' |
N5' |
C4' |
H4' |
0.4 |
359.9 |
| H5' |
N5' |
C1' |
C2' |
187.1 |
180.2 |
| H5' |
N5' |
C1' |
C6' |
357.1 |
0.1 |
| N3' |
C4' |
N5' |
C1' |
0.5 |
0.1 |
| N3' |
C4' |
N5' |
H5' |
180.5 |
180.0 |
| N5' |
C4' |
N3' |
H4' |
180.0 |
179.9 |
| C4' |
N3' |
C2' |
C1' |
11.8 |
0.4 |
| C4' |
N3' |
C2' |
H2' |
191.8 |
180.0 |
| H4' |
C4' |
N5' |
C1' |
180.4 |
180.0 |
| H4' |
C4' |
N5' |
H5' |
0.4 |
359.9 |
| N5' |
C4' |
H4' |
N3' |
180.0 |
180.1 |
| H4' |
C4' |
N3' |
C2' |
172.3 |
179.8 |
| N5' |
C1' |
C2' |
N3' |
348.4 |
359.7 |
| C2' |
N3' |
C4' |
H4' |
172.3 |
179.8 |
| C1' |
C2' |
N3' |
H2' |
180.0 |
180.4 |
| N3' |
C2' |
C1' |
C6' |
177.6 |
179.9 |
| C2' |
C1' |
N5' |
H5' |
187.1 |
180.2 |
| N5' |
C1' |
C2' |
C6' |
170.8 |
179.8 |
| N3' |
C2' |
C1' |
H2' |
180.0 |
179.6 |
| C2' |
C1' |
C6' |
C9 |
179.7 |
143.3 |
| C2' |
C1' |
C6' |
H6' |
359.8 |
323.4 |
| N3' |
C2' |
H2' |
C1' |
180.0 |
180.5 |
| H2' |
C2' |
C1' |
C6' |
357.7 |
0.3 |
| C6' |
C1' |
N5' |
H5' |
357.1 |
0.1 |
| N5' |
C1' |
C6' |
C2' |
191.4 |
180.2 |
| C6' |
C1' |
C2' |
H2' |
357.7 |
0.3 |
| C9 |
C6' |
C1' |
H6' |
180.0 |
179.9 |
| C1' |
C6' |
C9 |
C8 |
354.7 |
353.0 |
| C1' |
C6' |
C9 |
C4 |
177.2 |
173.1 |
| C1' |
C6' |
C9 |
H6' |
180.0 |
180.1 |
| C8 |
C9 |
C6' |
C4 |
177.5 |
179.9 |
| C6' |
C9 |
C8 |
O10 |
1.2 |
0.1 |
| C6' |
C9 |
C8 |
N7 |
181.4 |
180.0 |
| C6' |
C9 |
C4 |
C5 |
178.7 |
180.0 |
| C6' |
C9 |
C4 |
C3 |
359.0 |
0.4 |
| C1' |
C6' |
H6' |
C9 |
180.0 |
179.9 |
| H6' |
C6' |
C9 |
C8 |
174.7 |
172.9 |
| H6' |
C6' |
C9 |
C4 |
357.2 |
353.0 |
| C8 |
C9 |
C6' |
H6' |
174.7 |
172.9 |
| C6' |
C9 |
C8 |
C4 |
182.1 |
180.0 |
| C8 |
C9 |
C4 |
C5 |
0.6 |
0.0 |
| C8 |
C9 |
C4 |
C3 |
180.8 |
180.4 |
| O10 |
C8 |
C9 |
N7 |
179.8 |
180.1 |
| C9 |
C8 |
N7 |
C5 |
0.5 |
0.1 |
| C9 |
C8 |
N7 |
HN7 |
180.5 |
180.0 |
| C4 |
C9 |
C6' |
H6' |
357.2 |
353.0 |
| C6' |
C9 |
C4 |
C8 |
178.1 |
180.0 |
| C4 |
C9 |
C8 |
O10 |
179.1 |
180.0 |
| C4 |
C9 |
C8 |
N7 |
359.3 |
360.0 |
| N7 |
C5 |
C4 |
C9 |
359.6 |
360.0 |
| C6 |
C5 |
C4 |
C9 |
179.9 |
180.0 |
| C5 |
C4 |
C9 |
C3 |
179.8 |
179.6 |
| C2 |
C3 |
C4 |
C9 |
179.9 |
180.2 |
| C9 |
C4 |
C3 |
H3 |
359.9 |
359.9 |
| O10 |
C8 |
C9 |
C4 |
179.1 |
180.0 |
| C9 |
C8 |
O10 |
N7 |
180.2 |
179.9 |
| O10 |
C8 |
N7 |
C5 |
180.7 |
180.0 |
| O10 |
C8 |
N7 |
HN7 |
0.7 |
359.9 |
| N7 |
C8 |
C9 |
C4 |
359.3 |
360.0 |
| C9 |
C8 |
N7 |
O10 |
179.8 |
180.1 |
| C5 |
N7 |
C8 |
HN7 |
180.0 |
180.0 |
| C8 |
N7 |
C5 |
C6 |
179.6 |
180.0 |
| C8 |
N7 |
C5 |
C4 |
359.9 |
360.0 |
| C9 |
C4 |
C5 |
N7 |
359.6 |
360.0 |
| C8 |
N7 |
C5 |
HN7 |
180.0 |
180.0 |
| C6 |
C5 |
N7 |
C4 |
179.7 |
180.0 |
| N7 |
C5 |
C6 |
C1 |
180.5 |
180.0 |
| N7 |
C5 |
C6 |
H6 |
0.5 |
359.9 |
| N7 |
C5 |
C4 |
C3 |
179.4 |
179.6 |
| C8 |
N7 |
HN7 |
C5 |
180.0 |
180.0 |
| HN7 |
N7 |
C5 |
C6 |
359.6 |
0.0 |
| HN7 |
N7 |
C5 |
C4 |
180.0 |
180.0 |
| C9 |
C4 |
C5 |
C6 |
179.9 |
180.0 |
| C6 |
C5 |
N7 |
HN7 |
359.6 |
0.0 |
| N7 |
C5 |
C6 |
C4 |
180.4 |
180.0 |
| C6 |
C5 |
C4 |
C3 |
359.7 |
359.6 |
| C1 |
C6 |
C5 |
H6 |
180.0 |
180.1 |
| C5 |
C6 |
C1 |
C2 |
0.0 |
360.0 |
| C5 |
C6 |
C1 |
H1 |
180.0 |
180.0 |
| C9 |
C4 |
C5 |
C3 |
180.2 |
180.4 |
| C4 |
C5 |
N7 |
HN7 |
180.0 |
180.0 |
| N7 |
C5 |
C4 |
C6 |
179.7 |
180.0 |
| C4 |
C5 |
C6 |
C1 |
0.2 |
0.1 |
| C4 |
C5 |
C6 |
H6 |
180.2 |
180.0 |
| C2 |
C3 |
C4 |
C5 |
0.2 |
0.7 |
| C5 |
C4 |
C3 |
H3 |
180.2 |
180.4 |
| C1 |
C6 |
C5 |
C4 |
0.2 |
0.1 |
| C5 |
C6 |
C1 |
H6 |
180.0 |
179.9 |
| C2 |
C1 |
C6 |
H1 |
180.0 |
180.0 |
| C6 |
C1 |
C2 |
O11 |
179.8 |
180.1 |
| C6 |
C1 |
C2 |
C3 |
359.9 |
0.3 |
| H6 |
C6 |
C5 |
C4 |
180.2 |
180.0 |
| C5 |
C6 |
H6 |
C1 |
180.0 |
180.1 |
| H6 |
C6 |
C1 |
C2 |
180.0 |
180.1 |
| H6 |
C6 |
C1 |
H1 |
0.0 |
0.1 |
| C2 |
C1 |
C6 |
H6 |
180.0 |
180.1 |
| C6 |
C1 |
C2 |
H1 |
180.0 |
180.0 |
| O11 |
C2 |
C1 |
C3 |
179.9 |
179.8 |
| C1 |
C2 |
O11 |
C12 |
180.1 |
360.0 |
| C1 |
C2 |
C3 |
C4 |
0.0 |
359.4 |
| C1 |
C2 |
C3 |
H3 |
180.0 |
179.7 |
| H1 |
C1 |
C6 |
H6 |
0.0 |
0.1 |
| C6 |
C1 |
H1 |
C2 |
180.0 |
180.0 |
| H1 |
C1 |
C2 |
O11 |
359.8 |
0.1 |
| H1 |
C1 |
C2 |
C3 |
179.9 |
180.3 |
| O11 |
C2 |
C1 |
H1 |
359.8 |
0.1 |
| C1 |
C2 |
O11 |
C3 |
180.1 |
180.2 |
| O11 |
C2 |
C3 |
C4 |
180.1 |
179.6 |
| O11 |
C2 |
C3 |
H3 |
0.1 |
359.9 |
| C2 |
O11 |
C12 |
H121 |
54.7 |
180.1 |
| C2 |
O11 |
C12 |
H122 |
180.0 |
300.0 |
| C2 |
O11 |
C12 |
H123 |
305.3 |
60.0 |
| C9 |
C4 |
C3 |
C2 |
179.9 |
180.2 |
| C5 |
C4 |
C3 |
C2 |
0.2 |
0.7 |
| C3 |
C2 |
C1 |
H1 |
179.9 |
180.3 |
| C1 |
C2 |
C3 |
O11 |
179.9 |
179.8 |
| C3 |
C2 |
O11 |
C12 |
0.0 |
179.7 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
179.7 |
| C12 |
O11 |
C2 |
C3 |
0.0 |
179.7 |
| H121 |
C12 |
O11 |
H122 |
234.7 |
240.1 |
| H121 |
C12 |
O11 |
H123 |
109.5 |
120.0 |
| H122 |
C12 |
O11 |
H123 |
234.8 |
240.0 |
| O11 |
C12 |
H121 |
H122 |
135.6 |
120.0 |
| O11 |
C12 |
H121 |
H123 |
247.8 |
240.0 |
| H122 |
C12 |
H121 |
H123 |
112.2 |
120.0 |
| O11 |
C12 |
H122 |
H121 |
234.7 |
240.0 |
| O11 |
C12 |
H122 |
H123 |
125.2 |
120.1 |
| H121 |
C12 |
H122 |
H123 |
250.5 |
240.0 |
| O11 |
C12 |
H123 |
H121 |
112.2 |
120.0 |
| O11 |
C12 |
H123 |
H122 |
224.4 |
239.9 |
| H121 |
C12 |
H123 |
H122 |
112.2 |
119.9 |
| C9 |
C4 |
C3 |
C5 |
179.7 |
179.5 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
180.3 |
| C2 |
C3 |
H3 |
C4 |
180.0 |
179.7 |