PDB Chemical Component ST8

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for ST8

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C2 N3 1.341 1.325
C2 N1 1.339 1.325
C2 N2 1.329 1.375
C10 C11 1.505 1.529
C10 O6 1.423 1.428
C10 H101 1.100 1.090
C10 H102 1.100 1.089
C11 C12 1.523 1.530
C11 C16 1.516 1.529
C11 H11 1.100 1.090
C12 C13 1.512 1.530
C12 H121 1.100 1.090
C12 H122 1.100 1.090
C13 C14 1.529 1.529
C13 H131 1.100 1.090
C13 H132 1.100 1.090
C14 C15 1.539 1.530
C14 H141 1.100 1.090
C14 H142 1.100 1.090
C15 C16 1.519 1.530
C15 H151 1.100 1.090
C15 H152 1.100 1.090
C16 H161 1.100 1.090
C16 H162 1.100 1.089
C19 C20 1.394 1.397
C19 C18 1.375 1.376
C19 H19 1.061 1.080
C20 C21 1.407 1.397
C20 C23 1.526 1.475
C21 C22 1.402 1.376
C21 H21 1.061 1.080
C22 C17 1.396 1.391
C22 H22 1.062 1.080
N25 C23 1.422 1.347
N25 H251 0.995 0.970
N25 H252 0.995 0.970
N3 C4 1.337 1.323
C4 O6 1.356 1.350
C4 C5 1.460 1.471
C5 N7 1.382 1.324
C5 C6 1.476 1.473
N7 O8 1.210 1.218
N9 C6 1.342 1.372
N9 H9N1 0.995 0.970
N9 H9N2 0.995 0.970
C6 N1 1.358 1.325
N2 C17 1.378 1.392
N2 H2 0.995 0.970
C17 C18 1.395 1.392
C18 H18 1.062 1.080
C23 O24 1.225 1.216

Bond Angles for ST8

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N3 C2 N1 123.1 123.9
N3 C2 N2 118.5 118.1
C2 N3 C4 122.2 121.8
N1 C2 N2 118.3 118.0
C2 N1 C6 120.6 121.7
C2 N2 C17 123.1 120.0
C2 N2 H2 118.4 119.9
C11 C10 O6 107.6 109.5
C11 C10 H101 109.9 109.5
C11 C10 H102 110.5 109.5
C10 C11 C12 108.6 109.5
C10 C11 C16 108.0 109.5
C10 C11 H11 111.1 109.5
O6 C10 H101 109.9 109.4
O6 C10 H102 110.5 109.5
C10 O6 C4 118.6 106.8
H101 C10 H102 108.3 109.4
C12 C11 C16 109.9 109.5
C12 C11 H11 109.3 109.5
C11 C12 C13 106.1 109.5
C11 C12 H121 110.3 109.5
C11 C12 H122 111.4 109.5
C16 C11 H11 109.9 109.4
C11 C16 C15 107.1 109.5
C11 C16 H161 110.1 109.5
C11 C16 H162 110.9 109.5
C13 C12 H121 110.3 109.5
C13 C12 H122 111.4 109.5
C12 C13 C14 108.5 109.5
C12 C13 H131 109.7 109.5
C12 C13 H132 110.0 109.5
H121 C12 H122 107.3 109.5
C14 C13 H131 109.7 109.4
C14 C13 H132 110.0 109.5
C13 C14 C15 114.0 109.5
C13 C14 H141 108.3 109.5
C13 C14 H142 106.8 109.4
H131 C13 H132 108.8 109.4
C15 C14 H141 108.3 109.5
C15 C14 H142 106.8 109.5
C14 C15 C16 110.1 109.5
C14 C15 H151 109.3 109.5
C14 C15 H152 109.1 109.5
H141 C14 H142 112.6 109.5
C16 C15 H151 109.4 109.5
C16 C15 H152 109.1 109.5
C15 C16 H161 110.1 109.4
C15 C16 H162 110.9 109.5
H151 C15 H152 109.8 109.5
H161 C16 H162 107.9 109.5
C20 C19 C18 119.9 120.0
C20 C19 H19 120.1 120.0
C19 C20 C21 118.5 119.8
C19 C20 C23 118.8 120.1
C18 C19 H19 120.1 120.0
C19 C18 C17 122.0 120.0
C19 C18 H18 119.0 120.0
C21 C20 C23 122.5 120.1
C20 C21 C22 121.6 120.0
C20 C21 H21 119.2 120.0
C20 C23 N25 124.8 120.0
C20 C23 O24 117.2 120.0
C22 C21 H21 119.2 120.0
C21 C22 C17 118.7 120.1
C21 C22 H22 120.7 120.0
C17 C22 H22 120.6 119.9
C22 C17 N2 122.6 120.0
C22 C17 C18 119.2 120.1
C23 N25 H251 120.0 120.0
C23 N25 H252 120.0 120.0
N25 C23 O24 117.9 120.0
H251 N25 H252 119.9 120.0
N3 C4 O6 121.1 121.0
N3 C4 C5 118.7 117.9
O6 C4 C5 120.0 121.0
C4 C5 N7 119.0 121.6
C4 C5 C6 116.5 116.8
N7 C5 C6 124.5 121.6
C5 N7 O8 119.8 120.0
C5 C6 N9 121.1 121.0
C5 C6 N1 118.9 117.9
C6 N9 H9N1 120.0 120.0
C6 N9 H9N2 120.0 120.0
N9 C6 N1 120.0 121.1
H9N1 N9 H9N2 120.0 120.0
C17 N2 H2 118.5 120.0
N2 C17 C18 118.1 119.9
C17 C18 H18 119.0 119.9

Torsion Angles for ST8

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N1 C2 N3 N2 181.6 179.7
N3 C2 N1 C6 0.2 0.3
N3 C2 N2 C17 344.9 184.9
N3 C2 N2 H2 164.9 4.8
C2 N3 C4 O6 174.0 180.3
C2 N3 C4 C5 359.5 0.6
N3 C2 N1 N2 178.4 180.3
N1 C2 N3 C4 0.4 359.4
N1 C2 N2 C17 163.3 5.2
N1 C2 N2 H2 343.4 185.1
C5 C6 N1 C2 359.3 360.0
N9 C6 N1 C2 178.7 180.0
N3 C2 N2 N1 181.6 179.7
N2 C2 N3 C4 178.8 179.7
N2 C2 N1 C6 181.9 180.0
C22 C17 N2 C2 335.0 33.9
C17 N2 C2 H2 180.0 180.1
C2 N2 C17 C18 155.3 214.0
O6 C10 C11 H101 240.3 120.0
O6 C10 C11 H102 120.8 239.9
C11 C10 O6 C4 159.0 180.0
H101 C10 C11 H102 240.5 120.0
C12 C11 C10 C16 119.1 240.0
C12 C11 C10 H11 239.7 120.0
C10 C11 C12 C13 172.6 180.0
C10 C11 C12 H121 292.1 300.0
C10 C11 C12 H122 51.2 60.0
C16 C11 C10 H11 120.6 240.0
C10 C11 C16 C15 184.8 180.0
C10 C11 C16 H161 304.4 300.0
C10 C11 C16 H162 63.7 60.0
C11 C10 O6 H101 119.7 240.0
C11 C10 O6 H102 239.2 120.1
O6 C10 C11 C12 292.7 180.0
O6 C10 C11 C16 173.6 300.0
O6 C10 C11 H11 53.0 60.0
H101 C10 O6 H102 119.5 240.1
N3 C4 O6 C10 5.4 0.3
C10 O6 C4 C5 179.9 180.0
C11 C10 H101 O6 241.7 120.0
C11 C10 H101 H102 120.8 240.0
H101 C10 C11 C12 52.4 60.0
H101 C10 C11 C16 293.3 180.0
H101 C10 C11 H11 172.7 300.0
O6 C10 H101 H102 239.1 120.0
H101 C10 O6 C4 39.3 300.0
C11 C10 H102 O6 119.1 239.9
C11 C10 H102 H101 239.6 120.0
H102 C10 C11 C12 171.9 300.0
H102 C10 C11 C16 52.8 60.1
H102 C10 C11 H11 292.2 180.0
O6 C10 H102 H101 120.5 240.1
H102 C10 O6 C4 279.9 59.9
C12 C11 C10 O6 292.7 180.0
C12 C11 C10 H101 52.4 60.0
C12 C11 C10 H102 171.9 300.0
C10 C11 C12 C16 242.0 120.0
C10 C11 C12 H11 121.4 240.0
C16 C11 C12 H11 239.4 120.0
C12 C11 C16 C15 66.5 300.0
C12 C11 C16 H161 186.1 60.0
C12 C11 C16 H162 305.4 180.0
C13 C12 C11 H121 240.5 240.0
C13 C12 C11 H122 121.4 120.0
C11 C12 C13 C14 60.8 300.0
C11 C12 C13 H131 180.6 60.0
C11 C12 C13 H132 300.3 180.0
H121 C12 C11 H122 240.9 240.0
C16 C11 C10 O6 173.6 300.0
C16 C11 C10 H101 293.3 180.0
C16 C11 C10 H102 52.8 60.1
C10 C11 C16 C12 118.3 240.0
C10 C11 C16 H11 238.6 120.0
C12 C11 C16 H11 120.3 240.0
C16 C11 C12 C13 290.5 60.0
C16 C11 C12 H121 50.0 180.0
C16 C11 C12 H122 169.1 300.0
C14 C15 C16 C11 304.4 60.0
C11 C16 C15 H151 64.5 300.0
C11 C16 C15 H152 184.7 180.0
C15 C16 C11 H161 240.4 240.1
C15 C16 C11 H162 121.1 120.0
H161 C16 C11 H162 240.7 240.0
H11 C11 C10 O6 53.0 60.0
H11 C11 C10 H101 172.7 300.0
H11 C11 C10 H102 292.2 180.0
C10 C11 H11 C12 240.2 120.0
C10 C11 H11 C16 119.5 240.0
C12 C11 H11 C16 239.4 120.0
H11 C11 C12 C13 51.2 300.0
H11 C11 C12 H121 170.7 60.0
H11 C11 C12 H122 289.7 180.0
H11 C11 C16 C15 306.2 60.0
H11 C11 C16 H161 65.8 180.0
H11 C11 C16 H162 185.1 300.0
C13 C12 C11 C16 290.5 60.0
C13 C12 C11 H11 51.2 300.0
C11 C12 C13 H121 119.5 120.0
C11 C12 C13 H122 238.6 240.0
H121 C12 C13 H122 119.1 120.0
C14 C13 C12 H131 240.2 240.0
C14 C13 C12 H132 120.4 120.1
C12 C13 C14 C15 305.2 60.0
C12 C13 C14 H141 65.9 180.0
C12 C13 C14 H142 187.4 300.0
H131 C13 C12 H132 240.3 240.0
H121 C12 C11 C16 50.0 180.0
H121 C12 C11 H11 170.7 60.0
C11 C12 H121 C13 243.1 240.0
C11 C12 H121 H122 121.5 120.0
C13 C12 H121 H122 238.5 240.0
H121 C12 C13 C14 301.3 180.0
H121 C12 C13 H131 61.1 300.0
H121 C12 C13 H132 180.9 60.0
H122 C12 C11 C16 169.1 300.0
H122 C12 C11 H11 289.7 180.0
C11 C12 H122 C13 118.3 120.0
C11 C12 H122 H121 239.2 240.0
C13 C12 H122 H121 120.9 120.0
H122 C12 C13 C14 182.2 60.0
H122 C12 C13 H131 302.0 180.0
H122 C12 C13 H132 61.8 300.0
C14 C13 C12 H121 301.3 180.0
C14 C13 C12 H122 182.2 60.0
C12 C13 C14 H131 119.9 120.0
C12 C13 C14 H132 239.6 240.0
H131 C13 C14 H132 119.7 120.0
C15 C14 C13 H141 239.3 240.0
C15 C14 C13 H142 117.8 120.0
C13 C14 C15 C16 52.3 300.0
C13 C14 C15 H151 292.2 60.0
C13 C14 C15 H152 172.0 180.0
H141 C14 C13 H142 238.4 240.0
H131 C13 C12 H121 61.1 300.0
H131 C13 C12 H122 302.0 180.0
C12 C13 H131 C14 240.9 240.0
C12 C13 H131 H132 120.5 120.0
C14 C13 H131 H132 239.6 240.0
H131 C13 C14 C15 185.3 300.0
H131 C13 C14 H141 306.0 60.0
H131 C13 C14 H142 67.5 180.0
H132 C13 C12 H121 180.9 60.0
H132 C13 C12 H122 61.8 300.0
C12 C13 H132 C14 119.5 120.1
C12 C13 H132 H131 239.7 240.0
C14 C13 H132 H131 120.2 120.0
H132 C13 C14 C15 65.6 180.0
H132 C13 C14 H141 186.3 300.0
H132 C13 C14 H142 307.9 60.0
C11 C16 C15 C14 304.4 60.0
C15 C14 C13 H131 185.3 300.0
C15 C14 C13 H132 65.6 180.0
C13 C14 C15 H141 120.7 120.0
C13 C14 C15 H142 242.2 240.0
H141 C14 C15 H142 121.6 120.0
C16 C15 C14 H151 120.1 240.0
C16 C15 C14 H152 240.3 120.0
C14 C15 C16 H161 184.8 300.0
C14 C15 C16 H162 65.5 180.0
H151 C15 C14 H152 120.2 240.0
H141 C14 C13 H131 306.0 60.0
H141 C14 C13 H132 186.3 300.0
C13 C14 H141 C15 235.9 240.0
C13 C14 H141 H142 118.0 120.0
C15 C14 H141 H142 242.1 240.0
H141 C14 C15 C16 291.6 180.1
H141 C14 C15 H151 171.5 300.0
H141 C14 C15 H152 51.3 60.0
H142 C14 C13 H131 67.5 180.0
H142 C14 C13 H132 307.9 60.0
C13 C14 H142 C15 122.3 120.0
C13 C14 H142 H141 241.2 240.0
C15 C14 H142 H141 118.8 120.0
H142 C14 C15 C16 170.0 60.0
H142 C14 C15 H151 49.9 180.0
H142 C14 C15 H152 289.8 300.0
C15 C16 C11 H11 306.2 60.0
C11 C16 C15 H161 119.6 120.0
C11 C16 C15 H162 238.9 239.9
C16 C15 C14 H141 291.6 180.1
C16 C15 C14 H142 170.0 60.0
C14 C15 C16 H151 239.9 120.0
C14 C15 C16 H152 119.7 240.0
H151 C15 C16 H152 239.8 120.0
H161 C16 C15 H162 119.3 120.0
H151 C15 C14 H141 171.5 300.0
H151 C15 C14 H142 49.9 180.0
C14 C15 H151 C16 120.5 240.0
C14 C15 H151 H152 240.3 120.0
C16 C15 H151 H152 119.7 240.0
H151 C15 C16 H161 304.9 180.0
H151 C15 C16 H162 185.6 60.0
H152 C15 C14 H141 51.3 60.0
H152 C15 C14 H142 289.8 300.0
C14 C15 H152 C16 239.7 120.0
C14 C15 H152 H151 119.8 240.0
C16 C15 H152 H151 240.1 120.0
H152 C15 C16 H161 65.0 60.0
H152 C15 C16 H162 305.7 300.0
H161 C16 C11 H11 65.8 180.0
C11 C16 H161 C15 242.2 240.0
C11 C16 H161 H162 121.1 120.0
H161 C16 C15 H151 304.9 180.0
H161 C16 C15 H152 65.0 60.0
C15 C16 H161 H162 238.9 240.0
H162 C16 C11 H11 185.1 300.0
C11 C16 H162 C15 118.8 120.1
C11 C16 H162 H161 239.4 240.0
H162 C16 C15 H151 185.6 60.0
H162 C16 C15 H152 305.7 300.0
C15 C16 H162 H161 120.6 119.9
C18 C19 C20 H19 180.0 179.5
C20 C19 C18 C17 359.0 0.5
C20 C19 C18 H18 179.1 180.3
C21 C20 C19 C23 183.8 179.8
C19 C20 C21 C22 358.2 0.1
C19 C20 C21 H21 178.2 180.3
C19 C20 C23 N25 147.8 359.7
C19 C20 C23 O24 323.7 179.8
C20 C19 C18 H19 180.0 180.5
C18 C19 C20 C21 1.4 359.5
C18 C19 C20 C23 177.6 179.7
C22 C17 C18 C19 0.9 359.8
N2 C17 C18 C19 180.6 179.7
C17 C18 C19 H18 180.0 180.2
C20 C19 H19 C18 180.0 179.5
H19 C19 C20 C21 181.4 180.1
H19 C19 C20 C23 357.6 0.2
H19 C19 C18 C17 179.0 180.0
H19 C19 C18 H18 359.1 359.8
C21 C20 C19 C18 1.4 359.5
C21 C20 C19 H19 181.4 180.1
C19 C20 C21 C23 176.0 180.2
C21 C20 C23 N25 323.8 179.9
C21 C20 C23 O24 139.7 359.9
C22 C21 C20 H21 180.0 179.9
C20 C21 C22 C17 1.8 0.2
C20 C21 C22 H22 181.8 180.0
C23 C20 C19 C18 177.6 179.7
C23 C20 C19 H19 357.6 0.2
C19 C20 C23 C21 184.0 179.8
C23 C20 C21 C22 182.2 180.0
C23 C20 C21 H21 2.2 0.1
C20 C23 N25 H251 360.0 180.0
C20 C23 N25 H252 180.0 359.8
N25 C23 C20 O24 184.1 179.9
C22 C21 C20 C23 182.2 180.0
C20 C21 C22 H21 180.0 180.1
C17 C22 C21 H22 180.0 180.2
C21 C22 C17 N2 179.0 179.9
C21 C22 C17 C18 358.7 359.8
H21 C21 C20 C23 2.2 0.1
C20 C21 H21 C22 180.0 179.9
H21 C21 C22 C17 181.8 180.1
H21 C21 C22 H22 1.8 359.9
C2 N2 C17 C22 335.0 33.9
C19 C18 C17 C22 0.9 359.8
C17 C22 C21 H21 181.8 180.1
C21 C22 C17 H22 180.0 179.8
C22 C17 N2 H2 155.0 214.0
N2 C17 C22 C18 180.3 180.1
C22 C17 C18 H18 180.9 180.0
H22 C22 C21 H21 1.8 359.9
C21 C22 H22 C17 180.0 180.2
H22 C22 C17 N2 359.0 0.1
H22 C22 C17 C18 178.7 180.0
C20 C23 N25 O24 175.9 180.1
H251 N25 C23 H252 180.0 180.2
C23 N25 H251 H252 180.0 179.8
H251 N25 C23 O24 184.1 359.9
C23 N25 H252 H251 180.0 180.2
H252 N25 C23 O24 4.1 179.8
C4 N3 C2 N1 0.4 359.4
C4 N3 C2 N2 178.8 179.7
C10 O6 C4 N3 5.4 0.3
O6 C4 N3 C5 174.5 179.7
N3 C4 C5 N7 181.1 179.7
N3 C4 C5 C6 0.0 359.7
C4 O6 C10 H101 39.3 300.0
C4 O6 C10 H102 279.9 59.9
N3 C4 O6 C5 185.6 180.3
O6 C4 C5 N7 6.6 360.0
O6 C4 C5 C6 185.5 180.0
N3 C4 C5 O6 174.6 179.7
N7 C5 C4 C6 181.1 180.0
C4 C5 N7 O8 180.5 353.5
C4 C5 C6 N9 181.2 180.0
C4 C5 C6 N1 0.6 0.0
C4 C5 N7 C6 178.8 180.0
N7 C5 C6 N9 360.0 0.0
N7 C5 C6 N1 179.4 180.0
C2 N1 C6 C5 359.3 360.0
C4 C5 C6 N7 181.2 180.0
C6 C5 N7 O8 1.7 173.5
C5 C6 N9 H9N1 179.4 185.2
C5 C6 N9 H9N2 359.4 5.1
N9 C6 C5 N1 180.6 180.0
O8 N7 C5 C6 1.7 173.5
C2 N1 C6 N9 178.7 180.0
C5 C6 N9 N1 179.4 180.0
H9N1 N9 C6 H9N2 179.9 180.0
C6 N9 H9N1 H9N2 180.1 180.0
H9N1 N9 C6 N1 359.9 5.1
C6 N9 H9N2 H9N1 179.9 180.0
H9N2 N9 C6 N1 180.0 185.1
C6 N1 C2 N2 181.9 180.0
C5 C6 N1 N9 180.6 180.0
N1 C6 N9 H9N1 359.9 5.1
N1 C6 N9 H9N2 180.0 185.1
C2 N2 C17 H2 180.0 179.9
C19 C18 C17 N2 180.6 179.7
N2 C17 C22 H22 359.0 0.1
C22 C17 N2 C18 179.7 179.9
N2 C17 C18 H18 0.6 359.9
C2 N2 H2 C17 180.0 180.1
H2 N2 C17 C18 335.3 34.1
C17 C18 C19 H19 179.0 180.0
C19 C18 C17 H18 180.0 179.8
C18 C17 C22 H22 178.7 180.0
C22 C17 C18 N2 180.3 180.1
C18 C17 N2 H2 335.3 34.1
H18 C18 C19 H19 359.1 359.8
C19 C18 H18 C17 180.0 180.2
C20 C23 O24 N25 183.8 179.9
O24 C23 N25 H251 184.1 359.9
O24 C23 N25 H252 4.1 179.8